Protein–RNA interactions for Protein: O95602

POLR1A, DNA-directed RNA polymerase I subunit RPA1, humanhuman

Predicted RBP Predictions only

Length 1,720 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
POLR1AO95602 PTBP1-203ENST00000356948 3598 ntAPPRIS ALT1 TSL 1 (best) BASIC20.65■□□□□ 0.9
POLR1AO95602 CMPK1-203ENST00000371873 2930 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
POLR1AO95602 MBD1-225ENST00000591535 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
POLR1AO95602 WARS-203ENST00000358655 2466 ntTSL 2 BASIC20.65■□□□□ 0.9
POLR1AO95602 IMPDH1-203ENST00000354269 2580 ntTSL 2 BASIC20.64■□□□□ 0.9
POLR1AO95602 SPHK2-210ENST00000599748 2683 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.9
POLR1AO95602 ATL3-203ENST00000538786 1920 ntAPPRIS ALT2 TSL 2 BASIC20.64■□□□□ 0.9
POLR1AO95602 DAD1-201ENST00000250498 731 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
POLR1AO95602 NHP2P1-201ENST00000335274 462 ntBASIC20.64■□□□□ 0.9
POLR1AO95602 ACTG2-204ENST00000409918 927 ntTSL 1 (best) BASIC20.64■□□□□ 0.9
POLR1AO95602 BCL2L12P1-201ENST00000508390 733 ntBASIC20.64■□□□□ 0.9
POLR1AO95602 AC012617.1-201ENST00000586345 797 ntTSL 2 BASIC20.64■□□□□ 0.9
POLR1AO95602 ANKRD36C-208ENST00000619511 737 ntTSL 1 (best) BASIC20.64■□□□□ 0.9
POLR1AO95602 PNPT1-207ENST00000625249 216 ntTSL 5 BASIC20.64■□□□□ 0.9
POLR1AO95602 IDH3A-224ENST00000629769 114 ntTSL 5 BASIC20.64■□□□□ 0.9
POLR1AO95602 PCK2-203ENST00000545054 2505 ntTSL 2 BASIC20.64■□□□□ 0.9
POLR1AO95602 DCUN1D2-201ENST00000332592 2626 ntTSL 2 BASIC20.64■□□□□ 0.9
POLR1AO95602 FGFR1OP2-201ENST00000229395 2924 ntTSL 2 BASIC20.64■□□□□ 0.9
POLR1AO95602 CDK5RAP3-201ENST00000338399 1866 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
POLR1AO95602 CDKL3-206ENST00000521118 2160 ntAPPRIS ALT2 TSL 5 BASIC20.64■□□□□ 0.89
POLR1AO95602 BAP1-202ENST00000460680 3937 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
POLR1AO95602 PAX6-202ENST00000379107 2579 ntAPPRIS P4 TSL 5 BASIC20.64■□□□□ 0.89
POLR1AO95602 POLR2E-211ENST00000612655 1749 ntAPPRIS P1 TSL 3 BASIC20.64■□□□□ 0.89
POLR1AO95602 SLC35B2-206ENST00000615337 2014 ntTSL 4 BASIC20.64■□□□□ 0.89
POLR1AO95602 WASH2P-202ENST00000538033 2800 ntTSL 2 BASIC20.64■□□□□ 0.89
POLR1AO95602 CD8A-203ENST00000409511 3048 ntAPPRIS P4 TSL 2 BASIC20.64■□□□□ 0.89
POLR1AO95602 MED29-204ENST00000599213 2490 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.89
POLR1AO95602 MKS1-202ENST00000393119 2397 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
POLR1AO95602 SIGLEC5-201ENST00000534261 2360 ntAPPRIS P1 TSL 5 BASIC20.64■□□□□ 0.89
POLR1AO95602 GK-204ENST00000378945 2063 ntAPPRIS P3 TSL 1 (best) BASIC20.64■□□□□ 0.89
POLR1AO95602 GAREM2-202ENST00000407684 5138 ntTSL 2 BASIC20.64■□□□□ 0.89
POLR1AO95602 FP565260.2-201ENST00000623476 1599 ntAPPRIS P1 TSL 3 BASIC20.64■□□□□ 0.89
POLR1AO95602 UBL4B-201ENST00000334179 1478 ntAPPRIS P1 BASIC20.64■□□□□ 0.89
POLR1AO95602 LCMT1-203ENST00000399069 1368 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
POLR1AO95602 LEMD1-205ENST00000367154 786 ntTSL 2 BASIC20.64■□□□□ 0.89
POLR1AO95602 KRT18P4-201ENST00000422599 1288 ntBASIC20.64■□□□□ 0.89
POLR1AO95602 TIMP1-205ENST00000456754 1095 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
POLR1AO95602 AC008026.2-201ENST00000495438 348 ntBASIC20.64■□□□□ 0.89
POLR1AO95602 IKBKB-223ENST00000522147 954 ntTSL 5 BASIC20.64■□□□□ 0.89
POLR1AO95602 VENTXP3-201ENST00000546480 773 ntBASIC20.64■□□□□ 0.89
POLR1AO95602 PSMA6-215ENST00000622405 978 ntTSL 2 BASIC20.64■□□□□ 0.89
POLR1AO95602 LINC01002-234ENST00000633808 848 ntTSL 5 BASIC20.64■□□□□ 0.89
POLR1AO95602 ZNF324-201ENST00000196482 3000 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
POLR1AO95602 AQP1-201ENST00000311813 2913 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
POLR1AO95602 SDCBP2-AS1-201ENST00000446423 1811 ntTSL 2 BASIC20.63■□□□□ 0.89
POLR1AO95602 MARK1-202ENST00000366918 5169 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
POLR1AO95602 PCDHGB5-202ENST00000621169 2670 ntAPPRIS ALT2 BASIC20.63■□□□□ 0.89
POLR1AO95602 AC009093.10-201ENST00000641956 1442 ntBASIC20.63■□□□□ 0.89
POLR1AO95602 PIP4K2A-201ENST00000323883 1319 ntTSL 2 BASIC20.63■□□□□ 0.89
POLR1AO95602 HNRNPUL1-220ENST00000602130 2932 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
POLR1AO95602 TRIM45-202ENST00000369461 2415 ntTSL 5 BASIC20.63■□□□□ 0.89
POLR1AO95602 DLX6-202ENST00000518156 2304 ntAPPRIS P2 TSL 1 (best) BASIC20.63■□□□□ 0.89
POLR1AO95602 SNAP91-201ENST00000195649 4434 ntAPPRIS ALT2 TSL 5 BASIC20.63■□□□□ 0.89
POLR1AO95602 PAIP2-201ENST00000265192 1459 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
POLR1AO95602 SNAP91-204ENST00000369694 4449 ntAPPRIS P2 TSL 5 BASIC20.63■□□□□ 0.89
POLR1AO95602 CLCNKA-201ENST00000331433 2475 ntAPPRIS P3 TSL 1 (best) BASIC20.63■□□□□ 0.89
POLR1AO95602 WAC-203ENST00000354911 3042 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
POLR1AO95602 BRD7P5-201ENST00000299197 1822 ntBASIC20.63■□□□□ 0.89
POLR1AO95602 TRBV5-7-201ENST00000390378 343 ntAPPRIS P1 BASIC20.63■□□□□ 0.89
POLR1AO95602 KXD1-211ENST00000599319 707 ntAPPRIS P1 TSL 3 BASIC20.63■□□□□ 0.89
POLR1AO95602 AC110057.1-201ENST00000636031 898 ntBASIC20.63■□□□□ 0.89
POLR1AO95602 DOK1-202ENST00000340004 1722 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
POLR1AO95602 CCDC32-201ENST00000358005 1704 ntAPPRIS P1 TSL 2 BASIC20.63■□□□□ 0.89
POLR1AO95602 CTPS2-201ENST00000359276 3629 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
POLR1AO95602 GABRA1-201ENST00000023897 2083 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
POLR1AO95602 MAGED4B-202ENST00000360134 2510 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
POLR1AO95602 DDX50-206ENST00000610822 2510 ntTSL 5 BASIC20.63■□□□□ 0.89
POLR1AO95602 OSBPL5-202ENST00000348039 2798 ntTSL 2 BASIC20.63■□□□□ 0.89
POLR1AO95602 LETMD1-201ENST00000262055 2112 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
POLR1AO95602 LETMD1-203ENST00000418425 2123 ntTSL 2 BASIC20.63■□□□□ 0.89
POLR1AO95602 LINC00839-202ENST00000429940 2253 ntTSL 2 BASIC20.62■□□□□ 0.89
POLR1AO95602 MICB-201ENST00000252229 2446 ntAPPRIS P3 TSL 1 (best) BASIC20.62■□□□□ 0.89
POLR1AO95602 CXorf40A-209ENST00000441248 2411 ntAPPRIS P3 TSL 1 (best) BASIC20.62■□□□□ 0.89
POLR1AO95602 DNAI1-209ENST00000614641 2598 ntAPPRIS ALT2 TSL 5 BASIC20.62■□□□□ 0.89
POLR1AO95602 UBL3-201ENST00000380680 4384 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
POLR1AO95602 ZNF510-203ENST00000375231 5616 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
POLR1AO95602 MRPL35-201ENST00000254644 1061 ntAPPRIS ALT1 TSL 1 (best) BASIC20.62■□□□□ 0.89
POLR1AO95602 HIST1H4B-201ENST00000377745 438 ntAPPRIS P1 BASIC20.62■□□□□ 0.89
POLR1AO95602 COPS7B-204ENST00000409091 806 ntTSL 5 BASIC20.62■□□□□ 0.89
POLR1AO95602 Z95624.1-201ENST00000413528 628 ntTSL 5 BASIC20.62■□□□□ 0.89
POLR1AO95602 MFAP3-202ENST00000439768 1186 ntTSL 2 BASIC20.62■□□□□ 0.89
POLR1AO95602 GOLGA6L16P-201ENST00000441780 1299 ntBASIC20.62■□□□□ 0.89
POLR1AO95602 KRT18P37-201ENST00000520711 1282 ntBASIC20.62■□□□□ 0.89
POLR1AO95602 LINC01154-201ENST00000548617 454 ntTSL 3 BASIC20.62■□□□□ 0.89
POLR1AO95602 SELENOW-212ENST00000601048 888 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
POLR1AO95602 BBS1-202ENST00000393994 1790 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
POLR1AO95602 UBXN11-206ENST00000374222 2043 ntAPPRIS P4 TSL 5 BASIC20.62■□□□□ 0.89
POLR1AO95602 TYSND1-201ENST00000287078 3644 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
POLR1AO95602 ATP2B1-AS1-201ENST00000605386 3632 ntBASIC20.62■□□□□ 0.89
POLR1AO95602 FGFR3-202ENST00000340107 4293 ntAPPRIS ALT2 TSL 5 BASIC20.62■□□□□ 0.89
POLR1AO95602 BIRC5-203ENST00000374948 2446 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
POLR1AO95602 ZBED3-201ENST00000255198 6172 ntAPPRIS P2 TSL 1 (best) BASIC20.62■□□□□ 0.89
POLR1AO95602 FGF4-201ENST00000168712 3233 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
POLR1AO95602 RMND5A-201ENST00000283632 6301 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
POLR1AO95602 SPATA16-201ENST00000351008 2106 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
POLR1AO95602 AADAT-206ENST00000509167 2113 ntAPPRIS ALT1 TSL 1 (best) BASIC20.62■□□□□ 0.89
POLR1AO95602 STK40-202ENST00000373129 3846 ntAPPRIS P3 TSL 1 (best) BASIC20.62■□□□□ 0.89
POLR1AO95602 NOP14-AS1-201ENST00000503709 1616 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
POLR1AO95602 SHANK2-202ENST00000357171 1373 ntTSL 5 BASIC20.62■□□□□ 0.89
POLR1AO95602 CAPN5-202ENST00000456580 2805 ntTSL 2 BASIC20.62■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 43.6 ms