Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 CNN2P11-201ENST00000429351 262 ntBASIC14.32□□□□□ -0.12
CCDC28BQ9BUN5 AC092580.3-201ENST00000430932 139 ntBASIC14.32□□□□□ -0.12
CCDC28BQ9BUN5 TREX1-201ENST00000433541 1105 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
CCDC28BQ9BUN5 AL035588.1-201ENST00000438967 408 ntTSL 3 BASIC14.32□□□□□ -0.12
CCDC28BQ9BUN5 KLF2P3-201ENST00000451977 1087 ntBASIC14.32□□□□□ -0.12
CCDC28BQ9BUN5 GIMAP3P-201ENST00000495150 836 ntBASIC14.32□□□□□ -0.12
CCDC28BQ9BUN5 BAD-207ENST00000544785 525 ntTSL 3 BASIC14.32□□□□□ -0.12
CCDC28BQ9BUN5 VPS18-202ENST00000558474 873 ntTSL 3 BASIC14.32□□□□□ -0.12
CCDC28BQ9BUN5 SORD2P-201ENST00000558556 1069 ntBASIC14.32□□□□□ -0.12
CCDC28BQ9BUN5 HAGH-208ENST00000566709 1291 ntTSL 5 BASIC14.32□□□□□ -0.12
CCDC28BQ9BUN5 AC005262.2-201ENST00000587701 452 ntTSL 5 BASIC14.32□□□□□ -0.12
CCDC28BQ9BUN5 AC010327.4-202ENST00000591484 748 ntBASIC14.32□□□□□ -0.12
CCDC28BQ9BUN5 LINC00623-201ENST00000613486 486 ntTSL 5 BASIC14.32□□□□□ -0.12
CCDC28BQ9BUN5 Z92544.3-201ENST00000624747 417 ntBASIC14.32□□□□□ -0.12
CCDC28BQ9BUN5 SF1-205ENST00000377394 2854 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
CCDC28BQ9BUN5 KIAA2026-201ENST00000381461 6884 ntTSL 5 BASIC14.32□□□□□ -0.12
CCDC28BQ9BUN5 C19orf44-203ENST00000594035 2609 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
CCDC28BQ9BUN5 ATP2C2-AS1-201ENST00000565700 2998 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
CCDC28BQ9BUN5 AL138725.1-201ENST00000407347 1314 ntBASIC14.32□□□□□ -0.12
CCDC28BQ9BUN5 LINC01301-205ENST00000531654 1347 ntTSL 5 BASIC14.32□□□□□ -0.12
CCDC28BQ9BUN5 LMX1B-204ENST00000561065 1300 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
CCDC28BQ9BUN5 NOP58-201ENST00000264279 2046 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
CCDC28BQ9BUN5 USH1C-201ENST00000005226 2700 ntAPPRIS P3 TSL 5 BASIC14.32□□□□□ -0.12
CCDC28BQ9BUN5 CLPB-209ENST00000538039 3078 ntAPPRIS ALT1 TSL 2 BASIC14.32□□□□□ -0.12
CCDC28BQ9BUN5 AC105339.1-201ENST00000440089 1362 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
CCDC28BQ9BUN5 SELPLG-201ENST00000228463 1704 ntAPPRIS ALT2 TSL 2 BASIC14.32□□□□□ -0.12
CCDC28BQ9BUN5 MKL1-202ENST00000396617 4505 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
CCDC28BQ9BUN5 AFDN-203ENST00000366806 5962 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
CCDC28BQ9BUN5 POLD1-214ENST00000613923 3542 ntTSL 5 BASIC14.32□□□□□ -0.12
CCDC28BQ9BUN5 LINC01257-201ENST00000376678 2473 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
CCDC28BQ9BUN5 TAGLN-207ENST00000532870 2166 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
CCDC28BQ9BUN5 ATG13-215ENST00000529655 2566 ntAPPRIS P1 TSL 2 BASIC14.31□□□□□ -0.12
CCDC28BQ9BUN5 KLK6-203ENST00000391808 1478 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
CCDC28BQ9BUN5 TMPRSS12-202ENST00000551456 3336 ntTSL 2 BASIC14.31□□□□□ -0.12
CCDC28BQ9BUN5 RAB18-207ENST00000535776 4811 ntTSL 2 BASIC14.31□□□□□ -0.12
CCDC28BQ9BUN5 NOP9-201ENST00000267425 6033 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
CCDC28BQ9BUN5 TRAPPC8-201ENST00000283351 6226 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
CCDC28BQ9BUN5 LPO-203ENST00000421678 2729 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
CCDC28BQ9BUN5 KRTAP10-7-201ENST00000609664 1578 ntAPPRIS P1 BASIC14.31□□□□□ -0.12
CCDC28BQ9BUN5 ZNF23-203ENST00000393539 3242 ntAPPRIS P3 TSL 1 (best) BASIC14.31□□□□□ -0.12
CCDC28BQ9BUN5 AGAP10P-201ENST00000454844 2418 ntBASIC14.31□□□□□ -0.12
CCDC28BQ9BUN5 MAP2K3-203ENST00000361818 2034 ntTSL 5 BASIC14.31□□□□□ -0.12
CCDC28BQ9BUN5 ESS2-201ENST00000252137 5392 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
CCDC28BQ9BUN5 REM1-201ENST00000201979 1665 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
CCDC28BQ9BUN5 NDFIP2-205ENST00000612570 4648 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
CCDC28BQ9BUN5 AP002761.4-201ENST00000565433 3361 ntBASIC14.31□□□□□ -0.12
CCDC28BQ9BUN5 SPHK2-201ENST00000245222 2963 ntAPPRIS P3 TSL 1 (best) BASIC14.31□□□□□ -0.12
CCDC28BQ9BUN5 IZUMO4-201ENST00000395296 869 ntTSL 2 BASIC14.31□□□□□ -0.12
CCDC28BQ9BUN5 MBP-208ENST00000397866 2145 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
CCDC28BQ9BUN5 COX10-202ENST00000429152 875 ntTSL 2 BASIC14.31□□□□□ -0.12
CCDC28BQ9BUN5 AC005020.2-201ENST00000455905 830 ntAPPRIS P1 TSL 3 BASIC14.31□□□□□ -0.12
CCDC28BQ9BUN5 AL359815.1-201ENST00000457706 821 ntTSL 2 BASIC14.31□□□□□ -0.12
CCDC28BQ9BUN5 RN7SL399P-201ENST00000471648 279 ntBASIC14.31□□□□□ -0.12
CCDC28BQ9BUN5 LINC02437-201ENST00000505053 911 ntTSL 3 BASIC14.31□□□□□ -0.12
CCDC28BQ9BUN5 NME2-207ENST00000514264 850 ntAPPRIS P1 TSL 2 BASIC14.31□□□□□ -0.12
CCDC28BQ9BUN5 MSC-AS1-206ENST00000519751 596 ntTSL 4 BASIC14.31□□□□□ -0.12
CCDC28BQ9BUN5 LINC02356-202ENST00000552663 314 ntTSL 3 BASIC14.31□□□□□ -0.12
CCDC28BQ9BUN5 BRSK1-206ENST00000590333 2977 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
CCDC28BQ9BUN5 AC027612.4-201ENST00000605371 583 ntBASIC14.31□□□□□ -0.12
CCDC28BQ9BUN5 AC007431.3-201ENST00000623221 587 ntBASIC14.31□□□□□ -0.12
CCDC28BQ9BUN5 AL590560.3-201ENST00000623350 461 ntBASIC14.31□□□□□ -0.12
CCDC28BQ9BUN5 SETD6-203ENST00000394266 3423 ntTSL 5 BASIC14.31□□□□□ -0.12
CCDC28BQ9BUN5 NRROS-201ENST00000328557 2564 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
CCDC28BQ9BUN5 MAGEA4-202ENST00000360243 1773 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
CCDC28BQ9BUN5 MAGEA4-203ENST00000370335 1773 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
CCDC28BQ9BUN5 MAGEA4-204ENST00000370340 1773 ntAPPRIS P1 TSL 5 BASIC14.31□□□□□ -0.12
CCDC28BQ9BUN5 CAP1-203ENST00000372797 3105 ntAPPRIS P3 TSL 1 (best) BASIC14.31□□□□□ -0.12
CCDC28BQ9BUN5 C1QTNF1-203ENST00000354124 2714 ntAPPRIS P1 TSL 4 BASIC14.31□□□□□ -0.12
CCDC28BQ9BUN5 TOM1L1-201ENST00000348161 1895 ntTSL 2 BASIC14.31□□□□□ -0.12
CCDC28BQ9BUN5 AC022007.1-201ENST00000383808 1897 ntTSL 2 BASIC14.31□□□□□ -0.12
CCDC28BQ9BUN5 AC100757.3-201ENST00000622361 1406 ntBASIC14.31□□□□□ -0.12
CCDC28BQ9BUN5 METTL13-203ENST00000367737 2865 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
CCDC28BQ9BUN5 ARAP3-201ENST00000239440 5250 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
CCDC28BQ9BUN5 HIPK3-201ENST00000303296 7408 ntTSL 5 BASIC14.31□□□□□ -0.12
CCDC28BQ9BUN5 MAN2B2-202ENST00000504248 2968 ntTSL 2 BASIC14.31□□□□□ -0.12
CCDC28BQ9BUN5 PABPC1-201ENST00000318607 3485 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
CCDC28BQ9BUN5 ELL-201ENST00000262809 4027 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
CCDC28BQ9BUN5 ZNF618-201ENST00000288466 9109 ntAPPRIS P3 TSL 2 BASIC14.31□□□□□ -0.12
CCDC28BQ9BUN5 AC093668.2-201ENST00000481893 3569 ntTSL 2 BASIC14.31□□□□□ -0.12
CCDC28BQ9BUN5 AC105052.1-201ENST00000519541 3569 ntAPPRIS P1 TSL 2 BASIC14.31□□□□□ -0.12
CCDC28BQ9BUN5 RMDN1-201ENST00000406452 3063 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
CCDC28BQ9BUN5 CDK17-201ENST00000261211 4157 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
CCDC28BQ9BUN5 OR2C3-201ENST00000366487 8467 ntAPPRIS P1 BASIC14.3□□□□□ -0.12
CCDC28BQ9BUN5 CLN3-201ENST00000333496 1608 ntTSL 5 BASIC14.3□□□□□ -0.12
CCDC28BQ9BUN5 HHEX-202ENST00000472590 1605 ntTSL 2 BASIC14.3□□□□□ -0.12
CCDC28BQ9BUN5 SNHG22-201ENST00000589499 1615 ntTSL 2 BASIC14.3□□□□□ -0.12
CCDC28BQ9BUN5 AC072061.1-201ENST00000569710 2234 ntBASIC14.3□□□□□ -0.12
CCDC28BQ9BUN5 MUTYH-234ENST00000528013 1662 ntTSL 5 BASIC14.3□□□□□ -0.12
CCDC28BQ9BUN5 AC010255.3-203ENST00000509403 1727 ntAPPRIS P1 TSL 2 BASIC14.3□□□□□ -0.12
CCDC28BQ9BUN5 PELP1-202ENST00000436683 3524 ntTSL 2 BASIC14.3□□□□□ -0.12
CCDC28BQ9BUN5 KHSRPP1-201ENST00000427983 1768 ntBASIC14.3□□□□□ -0.12
CCDC28BQ9BUN5 AGAP5-201ENST00000374094 2394 ntAPPRIS P2 TSL 1 (best) BASIC14.3□□□□□ -0.12
CCDC28BQ9BUN5 PPP2R1A-201ENST00000322088 5380 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
CCDC28BQ9BUN5 SREBF1-205ENST00000395757 3696 ntAPPRIS ALT2 TSL 2 BASIC14.3□□□□□ -0.12
CCDC28BQ9BUN5 SIPA1L3-201ENST00000222345 7987 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
CCDC28BQ9BUN5 AL118506.1-201ENST00000601296 3082 ntBASIC14.3□□□□□ -0.12
CCDC28BQ9BUN5 CDK5RAP3-201ENST00000338399 1866 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
CCDC28BQ9BUN5 NCR3-201ENST00000340027 1042 ntAPPRIS P3 TSL 1 (best) BASIC14.3□□□□□ -0.12
CCDC28BQ9BUN5 AC073349.1-201ENST00000340779 1062 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
CCDC28BQ9BUN5 RNU1-114P-201ENST00000365297 166 ntBASIC14.3□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 45.2 ms