Protein–RNA interactions for Protein: P16989

YBX3, Y-box-binding protein 3, humanhuman

Known RBP eCLIP

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3P16989 RABGGTB-211ENST00000489450 586 ntTSL 54.77□□□□□ -1.655e-13■□□□□ 9
YBX3P16989 CNST-202ENST00000366512 2422 ntTSL 1 (best) BASIC19.12■□□□□ 0.654e-8■□□□□ 9
YBX3P16989 CNST-204ENST00000483271 2767 ntTSL 216.06■□□□□ 0.164e-8■□□□□ 9
YBX3P16989 EPB41-209ENST00000462032 752 ntTSL 27.01□□□□□ -1.292e-8■□□□□ 9
YBX3P16989 PRRC2A-213ENST00000487839 1071 ntTSL 512.93□□□□□ -0.344e-10■□□□□ 9
YBX3P16989 C7orf73-203ENST00000509448 581 ntTSL 423.78■■□□□ 1.45e-13■□□□□ 9
YBX3P16989 CHMP1A-204ENST00000547687 2007 ntTSL 1 (best)20.58■□□□□ 0.885e-13■□□□□ 9
YBX3P16989 C7orf73-201ENST00000422968 2004 ntTSL 1 (best)15.63■□□□□ 0.095e-13■□□□□ 9
YBX3P16989 C7orf73-202ENST00000507606 2450 ntAPPRIS P1 TSL 1 (best) BASIC9.45□□□□□ -0.95e-13■□□□□ 9
YBX3P16989 UBR5-204ENST00000518205 1931 ntTSL 5 BASIC5.49□□□□□ -1.535e-13■□□□□ 9
YBX3P16989 MAPK1-202ENST00000398822 1487 ntAPPRIS P1 TSL 1 (best) BASIC34.9■■■■□ 3.183e-12■□□□□ 9
YBX3P16989 MAPK1-204ENST00000544786 951 ntTSL 1 (best) BASIC4.27□□□□□ -1.733e-12■□□□□ 9
YBX3P16989 MED13-201ENST00000397786 10465 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.562e-7■□□□□ 9
YBX3P16989 SMARCA5-201ENST00000283131 7923 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.291e-6■□□□□ 9
YBX3P16989 LIMS1-214ENST00000542845 727 ntTSL 57.12□□□□□ -1.277e-7■□□□□ 9
YBX3P16989 AKT2-208ENST00000416994 904 ntTSL 424.88■■□□□ 1.573e-8■□□□□ 9
YBX3P16989 AKT2-236ENST00000580747 525 ntTSL 412.66□□□□□ -0.383e-8■□□□□ 9
YBX3P16989 PPA1-205ENST00000610026 3524 ntTSL 28.63□□□□□ -1.038e-14■□□□□ 9
YBX3P16989 SUPT6H-206ENST00000581510 1194 ntTSL 522.08■■□□□ 1.132e-11■□□□□ 9
YBX3P16989 CTSB-211ENST00000526481 660 ntTSL 517.8■□□□□ 0.442e-11■□□□□ 9
YBX3P16989 ARF1-209ENST00000478424 1059 ntTSL 233.78■■■■□ 32e-15■□□□□ 9
YBX3P16989 ARF1-208ENST00000478336 930 ntTSL 230.91■■■□□ 2.542e-15■□□□□ 9
YBX3P16989 ARF1-206ENST00000473949 578 ntTSL 528.27■■■□□ 2.122e-15■□□□□ 9
YBX3P16989 ARF1-202ENST00000469235 678 ntTSL 320.96■□□□□ 0.952e-15■□□□□ 9
YBX3P16989 ARF1-203ENST00000470558 820 ntTSL 220.08■□□□□ 0.812e-15■□□□□ 9
YBX3P16989 ARF1-212ENST00000497165 675 ntTSL 320.08■□□□□ 0.812e-15■□□□□ 9
YBX3P16989 ARF1-210ENST00000482962 597 ntTSL 319.13■□□□□ 0.652e-15■□□□□ 9
YBX3P16989 ARF1-204ENST00000470670 712 ntTSL 318.68■□□□□ 0.582e-15■□□□□ 9
YBX3P16989 BUD23-203ENST00000421744 895 ntTSL 224.8■■□□□ 1.561e-8■□□□□ 9
YBX3P16989 BUD23-208ENST00000432522 1074 ntTSL 224.48■■□□□ 1.511e-8■□□□□ 9
YBX3P16989 BUD23-218ENST00000496153 505 ntTSL 424.09■■□□□ 1.451e-8■□□□□ 9
YBX3P16989 BUD23-205ENST00000428163 577 ntTSL 318.45■□□□□ 0.541e-8■□□□□ 9
YBX3P16989 SHMT2-233ENST00000557529 1369 ntTSL 214.25□□□□□ -0.138e-8■□□□□ 9
YBX3P16989 ODF2-204ENST00000372814 2249 ntTSL 2 BASIC18.15■□□□□ 0.52e-6■□□□□ 9
YBX3P16989 ODF2-202ENST00000372791 2375 ntAPPRIS P3 TSL 1 (best) BASIC16.69■□□□□ 0.262e-6■□□□□ 9
YBX3P16989 ODF2-213ENST00000448249 2059 ntTSL 2 BASIC12.35□□□□□ -0.432e-6■□□□□ 9
YBX3P16989 ODF2-206ENST00000393533 2086 ntTSL 2 BASIC12.33□□□□□ -0.442e-6■□□□□ 9
YBX3P16989 ODF2-219ENST00000546203 2140 ntTSL 2 BASIC11.72□□□□□ -0.532e-6■□□□□ 9
YBX3P16989 ODF2-203ENST00000372807 2475 ntAPPRIS ALT1 TSL 1 (best) BASIC10.98□□□□□ -0.652e-6■□□□□ 9
YBX3P16989 ODF2-210ENST00000444119 2418 ntTSL 1 (best) BASIC10.86□□□□□ -0.672e-6■□□□□ 9
YBX3P16989 ODF2-201ENST00000351030 3899 ntAPPRIS ALT1 TSL 2 BASIC10.42□□□□□ -0.742e-6■□□□□ 9
YBX3P16989 ODF2-220ENST00000604420 3030 ntTSL 2 BASIC9.23□□□□□ -0.932e-6■□□□□ 9
YBX3P16989 ODF2-209ENST00000434106 3890 ntTSL 1 (best) BASIC9.14□□□□□ -0.952e-6■□□□□ 9
YBX3P16989 ODF2-205ENST00000393527 3653 ntTSL 1 (best) BASIC6.67□□□□□ -1.342e-6■□□□□ 9
YBX3P16989 AKT1-215ENST00000555926 553 ntTSL 326.38■■□□□ 1.812e-6■□□□□ 8.9
YBX3P16989 AKT1-212ENST00000555380 534 ntTSL 415.65■□□□□ 0.12e-6■□□□□ 8.9
YBX3P16989 MALSU1-203ENST00000476623 479 ntTSL 25.73□□□□□ -1.492e-6■□□□□ 8.9
YBX3P16989 CTNNA1-230ENST00000521724 2741 ntTSL 29.73□□□□□ -0.854e-8■□□□□ 8.9
YBX3P16989 CTNNA1-210ENST00000518825 3536 ntTSL 1 (best) BASIC8.6□□□□□ -1.034e-8■□□□□ 8.9
YBX3P16989 CTNNA1-201ENST00000302763 3756 ntAPPRIS P1 TSL 1 (best) BASIC8.42□□□□□ -1.064e-8■□□□□ 8.9
YBX3P16989 CTNNA1-244ENST00000627109 3831 ntTSL 5 BASIC8.04□□□□□ -1.124e-8■□□□□ 8.9
YBX3P16989 TBRG4-207ENST00000477328 596 ntTSL 216.12■□□□□ 0.175e-10■□□□□ 8.9
YBX3P16989 ITPRIP-202ENST00000337478 4093 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.25e-10■□□□□ 8.9
YBX3P16989 ITPRIP-201ENST00000278071 6807 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.335e-10■□□□□ 8.9
YBX3P16989 ITPRIP-203ENST00000358187 3981 ntAPPRIS P1 TSL 2 BASIC12.79□□□□□ -0.365e-10■□□□□ 8.9
YBX3P16989 ATP5A1-206ENST00000587902 571 ntTSL 210.71□□□□□ -0.697e-10■□□□□ 8.9
YBX3P16989 EEF2-205ENST00000598436 549 ntTSL 216.15■□□□□ 0.181e-80■□□□□ 8.9
YBX3P16989 ARF1-207ENST00000477451 789 ntTSL 521.42■■□□□ 1.021e-15■□□□□ 8.9
YBX3P16989 PRDX2-206ENST00000498785 505 ntTSL 214.67□□□□□ -0.062e-9■□□□□ 8.9
YBX3P16989 EIF4A1-219ENST00000581770 447 ntTSL 219.36■□□□□ 0.691e-24■□□□□ 8.9
YBX3P16989 EIF4A1-231ENST00000584054 716 ntTSL 212.36□□□□□ -0.431e-24■□□□□ 8.9
YBX3P16989 EIF2AK1-203ENST00000431744 806 ntTSL 334.17■■■■□ 3.065e-11■□□□□ 8.9
YBX3P16989 EIF2AK1-204ENST00000446699 573 ntTSL 434.17■■■■□ 3.065e-11■□□□□ 8.9
YBX3P16989 EIF2AK1-205ENST00000461493 631 ntTSL 225.52■■□□□ 1.685e-11■□□□□ 8.9
YBX3P16989 EIF2AK1-206ENST00000463213 791 ntTSL 222.1■■□□□ 1.135e-11■□□□□ 8.9
YBX3P16989 PKM-223ENST00000569050 457 ntTSL 424.49■■□□□ 1.517e-18■□□□□ 8.9
YBX3P16989 CDK1-204ENST00000448257 1948 ntAPPRIS ALT1 TSL 1 (best) BASIC21.28■■□□□ 12e-8■□□□□ 8.9
YBX3P16989 SNCG-204ENST00000483064 794 ntTSL 220.04■□□□□ 0.82e-8■□□□□ 8.9
YBX3P16989 NBR1-202ENST00000542611 2703 ntTSL 2 BASIC12.88□□□□□ -0.352e-8■□□□□ 8.9
YBX3P16989 NBR1-205ENST00000589872 3097 ntAPPRIS ALT2 TSL 1 (best) BASIC12.53□□□□□ -0.42e-8■□□□□ 8.9
YBX3P16989 CDK1-203ENST00000395284 1913 ntAPPRIS P2 TSL 1 (best) BASIC10.33□□□□□ -0.762e-8■□□□□ 8.9
YBX3P16989 CDK1-205ENST00000475504 1720 ntTSL 28.44□□□□□ -1.062e-8■□□□□ 8.9
YBX3P16989 CDK1-207ENST00000519078 723 ntTSL 37.52□□□□□ -1.212e-8■□□□□ 8.9
YBX3P16989 CDK1-202ENST00000373809 1613 ntTSL 1 (best) BASIC7.31□□□□□ -1.242e-8■□□□□ 8.9
YBX3P16989 CDK1-209ENST00000614696 1884 ntTSL 5 BASIC7.19□□□□□ -1.262e-8■□□□□ 8.9
YBX3P16989 MYB-240ENST00000534736 801 ntTSL 1 (best)5.85□□□□□ -1.472e-8■□□□□ 8.9
YBX3P16989 CDK1-201ENST00000316629 1733 ntTSL 5 BASIC5.37□□□□□ -1.552e-8■□□□□ 8.9
YBX3P16989 TPR-203ENST00000467810 581 ntTSL 25.65□□□□□ -1.52e-6■□□□□ 8.9
YBX3P16989 CCT2-210ENST00000550638 683 ntTSL 214.48□□□□□ -0.092e-7■□□□□ 8.9
YBX3P16989 CCT2-209ENST00000550455 481 ntTSL 214.33□□□□□ -0.122e-7■□□□□ 8.9
YBX3P16989 CCT2-212ENST00000551620 776 ntTSL 214.33□□□□□ -0.122e-7■□□□□ 8.9
YBX3P16989 CCT2-205ENST00000546859 595 ntTSL 211.29□□□□□ -0.62e-7■□□□□ 8.9
YBX3P16989 STK24-203ENST00000397517 4578 ntTSL 2 BASIC16.88■□□□□ 0.292e-6■□□□□ 8.9
YBX3P16989 STK24-205ENST00000444574 1590 ntTSL 1 (best)16.61■□□□□ 0.252e-6■□□□□ 8.9
YBX3P16989 STK24-204ENST00000418038 2172 ntTSL 215.71■□□□□ 0.112e-6■□□□□ 8.9
YBX3P16989 STK24-201ENST00000376547 2492 ntAPPRIS P3 TSL 1 (best) BASIC14.8□□□□□ -0.042e-6■□□□□ 8.9
YBX3P16989 STK24-208ENST00000539966 9361 ntAPPRIS ALT2 TSL 1 (best) BASIC11.06□□□□□ -0.642e-6■□□□□ 8.9
YBX3P16989 STK24-202ENST00000376554 3602 ntTSL 511□□□□□ -0.652e-6■□□□□ 8.9
YBX3P16989 PICALM-206ENST00000526907 737 ntTSL 58.27□□□□□ -1.091e-9■□□□□ 8.9
YBX3P16989 PICALM-205ENST00000526548 738 ntTSL 1 (best)7.66□□□□□ -1.181e-9■□□□□ 8.9
YBX3P16989 PICALM-214ENST00000530692 963 ntTSL 57.57□□□□□ -1.21e-9■□□□□ 8.9
YBX3P16989 PICALM-220ENST00000532603 566 ntTSL 47.04□□□□□ -1.281e-9■□□□□ 8.9
YBX3P16989 PICALM-207ENST00000526961 802 ntTSL 55.47□□□□□ -1.531e-9■□□□□ 8.9
YBX3P16989 CLTC-209ENST00000498711 2941 ntTSL 1 (best)4.24□□□□□ -1.732e-10■□□□□ 8.9
YBX3P16989 STAT3-212ENST00000588065 571 ntTSL 419.93■□□□□ 0.787e-16■□□□□ 8.9
YBX3P16989 ABCC1-203ENST00000572053 744 ntTSL 315.95■□□□□ 0.142e-8■□□□□ 8.9
YBX3P16989 STAT3-210ENST00000585360 517 ntTSL 312.65□□□□□ -0.387e-16■□□□□ 8.9
YBX3P16989 ST6GAL1-218ENST00000464827 494 ntTSL 211.82□□□□□ -0.521e-6■□□□□ 8.9
YBX3P16989 PSMA3-204ENST00000553677 363 ntTSL 57.15□□□□□ -1.262e-8■□□□□ 8.9
YBX3P16989 DAG1-221ENST00000541308 5676 ntAPPRIS P1 TSL 5 BASIC18.87■□□□□ 0.613e-7■□□□□ 8.9
Retrieved 100 of 29,075 protein–RNA pairs in 468.2 ms