RNA–Protein interactions for RNA: ENST00000547687.1

CHMP1A-204, Transcript of charged multivesicular body protein 1A, humanhuman

TSL 1 (best)

Gene CHMP1A, Length 2,007 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1A-204ENST00000547687 NISCHQ9Y2I1 1504 aa38.25■■■■□ 3.71
CHMP1A-204ENST00000547687 CCDC180Q9P1Z9 1646 aa34.05■■■■□ 3.04
CHMP1A-204ENST00000547687 ABCC9O60706 1549 aa33.66■■■□□ 2.98
CHMP1A-204ENST00000547687 DCAF8L2P0C7V8 631 aa32.21■■■□□ 2.75
CHMP1A-204ENST00000547687 RB1CC1Q8TDY2 1594 aa32.16■■■□□ 2.74
CHMP1A-204ENST00000547687 NACADO15069 1562 aa32.03■■■□□ 2.72
CHMP1A-204ENST00000547687 ZCCHC6Q5VYS8 1495 aaKnown RBP31.81■■■□□ 2.68
CHMP1A-204ENST00000547687 MYO15BQ96JP2 1530 aa31.67■■■□□ 2.66
CHMP1A-204ENST00000547687 UNC13AQ9UPW8 1703 aa31.61■■■□□ 2.65
CHMP1A-204ENST00000547687 DCAF1Q9Y4B6 1507 aa31.52■■■□□ 2.64
CHMP1A-204ENST00000547687 PABPN1Q86U42 306 aaKnown RBP eCLIP31.45■■■□□ 2.63
CHMP1A-204ENST00000547687 BICRAQ9NZM4 1560 aa31.27■■■□□ 2.6
CHMP1A-204ENST00000547687 SCRIBQ14160 1630 aa31.22■■■□□ 2.59
CHMP1A-204ENST00000547687 DNAJC5BQ9UF47 199 aa31.1■■■□□ 2.57
CHMP1A-204ENST00000547687 SHROOM4Q9ULL8 1493 aa30.68■■■□□ 2.5
CHMP1A-204ENST00000547687 EIF4G1Q04637 1599 aaKnown RBP30.44■■■□□ 2.46
CHMP1A-204ENST00000547687 CC2D2AQ9P2K1 1620 aa30.41■■■□□ 2.46
CHMP1A-204ENST00000547687 CECR2Q9BXF3 1484 aa30.2■■■□□ 2.42
CHMP1A-204ENST00000547687 SMARCA4P51532 1647 aa29.76■■■□□ 2.35
CHMP1A-204ENST00000547687 BAZ1AQ9NRL2 1556 aaPredicted RBP29.63■■■□□ 2.33
CHMP1A-204ENST00000547687 ATAD2BQ9ULI0 1458 aa29.61■■■□□ 2.33
CHMP1A-204ENST00000547687 NCAPD3P42695 1498 aa29.56■■■□□ 2.32
CHMP1A-204ENST00000547687 MROH2BQ7Z745 1585 aa29.55■■■□□ 2.32
CHMP1A-204ENST00000547687 SMARCA2P51531 1590 aa29.52■■■□□ 2.32
CHMP1A-204ENST00000547687 HMGXB3Q12766 1538 aa29.41■■■□□ 2.3
CHMP1A-204ENST00000547687 PEG3Q9GZU2 1588 aa29.37■■■□□ 2.29
CHMP1A-204ENST00000547687 BAZ1BQ9UIG0 1483 aaKnown RBP29.37■■■□□ 2.29
CHMP1A-204ENST00000547687 WIZO95785 1651 aa29.28■■■□□ 2.28
CHMP1A-204ENST00000547687 SUPT5HO00267 1087 aaKnown RBP29.16■■■□□ 2.26
CHMP1A-204ENST00000547687 NESP48681 1621 aa29.1■■■□□ 2.25
CHMP1A-204ENST00000547687 RSF1Q96T23 1441 aaPredicted RBP29.09■■■□□ 2.25
CHMP1A-204ENST00000547687 ERCC6Q03468 1493 aa28.97■■■□□ 2.23
CHMP1A-204ENST00000547687 LAMC3Q9Y6N6 1575 aa28.83■■■□□ 2.21
CHMP1A-204ENST00000547687 TOP2AP11388 1531 aaKnown RBP28.83■■■□□ 2.21
CHMP1A-204ENST00000547687 KIF21AQ7Z4S6 1674 aa28.76■■■□□ 2.19
CHMP1A-204ENST00000547687 CADPSQ9ULU8 1353 aa28.72■■■□□ 2.19
CHMP1A-204ENST00000547687 PDS5BQ9NTI5 1447 aa28.63■■■□□ 2.17
CHMP1A-204ENST00000547687 THOC2Q8NI27 1593 aaKnown RBP28.62■■■□□ 2.17
CHMP1A-204ENST00000547687 CUX2O14529 1486 aa28.62■■■□□ 2.17
CHMP1A-204ENST00000547687 CCDC88BA6NC98 1476 aa28.54■■■□□ 2.16
CHMP1A-204ENST00000547687 CFTRP13569 1480 aa28.51■■■□□ 2.15
CHMP1A-204ENST00000547687 FANCD2Q9BXW9 1451 aa28.44■■■□□ 2.14
CHMP1A-204ENST00000547687 CEP164Q9UPV0 1460 aa28.4■■■□□ 2.14
CHMP1A-204ENST00000547687 MRC2Q9UBG0 1479 aa28.39■■■□□ 2.14
CHMP1A-204ENST00000547687 PRDM2Q13029 1718 aa28.36■■■□□ 2.13
CHMP1A-204ENST00000547687 WDR62O43379 1518 aa28.31■■■□□ 2.12
CHMP1A-204ENST00000547687 URB2Q14146 1524 aaKnown RBP28.2■■■□□ 2.1
CHMP1A-204ENST00000547687 DNAJC5Q9H3Z4 198 aa28.03■■■□□ 2.08
CHMP1A-204ENST00000547687 TOPBP1Q92547 1522 aa27.97■■■□□ 2.07
CHMP1A-204ENST00000547687 DNMBPQ6XZF7 1577 aa27.9■■■□□ 2.06
CHMP1A-204ENST00000547687 CHIC1Q5VXU3 224 aa27.88■■■□□ 2.05
CHMP1A-204ENST00000547687 ABCC8Q09428 1581 aa27.82■■■□□ 2.04
CHMP1A-204ENST00000547687 ZNF608Q9ULD9 1512 aaPredicted RBP27.8■■■□□ 2.04
CHMP1A-204ENST00000547687 IFT140Q96RY7 1462 aa27.77■■■□□ 2.04
CHMP1A-204ENST00000547687 POLA1P09884 1462 aaPredicted RBP27.72■■■□□ 2.03
CHMP1A-204ENST00000547687 CUX1P39880 1505 aa27.72■■■□□ 2.03
CHMP1A-204ENST00000547687 TARBP1Q13395 1621 aaKnown RBP27.69■■■□□ 2.02
CHMP1A-204ENST00000547687 RAD54L2Q9Y4B4 1467 aa27.68■■■□□ 2.02
CHMP1A-204ENST00000547687 EIF4G3O43432 1585 aaKnown RBP27.66■■■□□ 2.02
CHMP1A-204ENST00000547687 FGD5Q6ZNL6 1462 aa27.65■■■□□ 2.02
CHMP1A-204ENST00000547687 AQRO60306 1485 aaKnown RBP eCLIP27.61■■■□□ 2.014e-8■■■■□ 20.5
CHMP1A-204ENST00000547687 SOGA1O94964 1423 aa27.59■■■□□ 2.01
CHMP1A-204ENST00000547687 TDRD9Q8NDG6 1382 aaKnown RBP27.52■■■□□ 2
CHMP1A-204ENST00000547687 SYNJ1O43426 1573 aa27.45■■□□□ 1.99
CHMP1A-204ENST00000547687 OSCARQ8IYS5 282 aa27.45■■□□□ 1.99
CHMP1A-204ENST00000547687 WDR97A6NE52 1622 aa27.44■■□□□ 1.98
CHMP1A-204ENST00000547687 WRNQ14191 1432 aaPredicted RBP eCLIP27.42■■□□□ 1.98
CHMP1A-204ENST00000547687 CHD1O14646 1710 aa27.41■■□□□ 1.98
CHMP1A-204ENST00000547687 BIVM-ERCC5R4GMW8 1640 aa27.4■■□□□ 1.98
CHMP1A-204ENST00000547687 TOP2BQ02880 1626 aa27.39■■□□□ 1.98
CHMP1A-204ENST00000547687 TRIM41Q8WV44 630 aa27.38■■□□□ 1.97
CHMP1A-204ENST00000547687 FBLN2P98095 1184 aa27.36■■□□□ 1.97
CHMP1A-204ENST00000547687 SNAPC4Q5SXM2 1469 aa27.32■■□□□ 1.96
CHMP1A-204ENST00000547687 PBRM1Q86U86 1689 aa27.31■■□□□ 1.96
CHMP1A-204ENST00000547687 ABCA10Q8WWZ4 1543 aa27.31■■□□□ 1.96
CHMP1A-204ENST00000547687 GAPVD1Q14C86 1478 aa27.27■■□□□ 1.96
CHMP1A-204ENST00000547687 ABCA5Q8WWZ7 1642 aa27.26■■□□□ 1.95
CHMP1A-204ENST00000547687 GRIN2BQ13224 1484 aa27.26■■□□□ 1.95
CHMP1A-204ENST00000547687 MAGI1Q96QZ7 1491 aaPredicted RBP27.18■■□□□ 1.94
CHMP1A-204ENST00000547687 CHMP7Q8WUX9 453 aaPredicted RBP27.16■■□□□ 1.94
CHMP1A-204ENST00000547687 RIMBP3CA6NJZ7 1639 aa27.13■■□□□ 1.93
CHMP1A-204ENST00000547687 RIMBP3BA6NNM3 1639 aa27.13■■□□□ 1.93
CHMP1A-204ENST00000547687 RIMBP3Q9UFD9 1639 aa27.13■■□□□ 1.93
CHMP1A-204ENST00000547687 SYNJ2O15056 1496 aa27.11■■□□□ 1.93
CHMP1A-204ENST00000547687 ARHGEF11O15085 1522 aa27.07■■□□□ 1.92
CHMP1A-204ENST00000547687 ADAMTS12P58397 1594 aa27.02■■□□□ 1.92
CHMP1A-204ENST00000547687 CLASP1Q7Z460 1538 aa26.99■■□□□ 1.91
CHMP1A-204ENST00000547687 ERICH3Q5RHP9 1530 aa26.96■■□□□ 1.91
CHMP1A-204ENST00000547687 GRIN2AQ12879 1464 aa26.94■■□□□ 1.9
CHMP1A-204ENST00000547687 FAM9AQ8IZU1 332 aaPredicted RBP26.93■■□□□ 1.9
CHMP1A-204ENST00000547687 LOC105371045A0A1W2PR82 267 aa26.92■■□□□ 1.9
CHMP1A-204ENST00000547687 FHAD1B1AJZ9 1412 aa26.9■■□□□ 1.9
CHMP1A-204ENST00000547687 CYB5RLQ6IPT4 315 aa26.87■■□□□ 1.89
CHMP1A-204ENST00000547687 CEP170Q5SW79 1584 aa26.87■■□□□ 1.89
CHMP1A-204ENST00000547687 ARAP1Q96P48 1450 aa26.84■■□□□ 1.89
CHMP1A-204ENST00000547687 KIF27Q86VH2 1401 aa26.83■■□□□ 1.89
CHMP1A-204ENST00000547687 NUP160Q12769 1436 aa26.79■■□□□ 1.88
CHMP1A-204ENST00000547687 IGF1RP08069 1367 aa26.78■■□□□ 1.88
CHMP1A-204ENST00000547687 ERCC6L2Q5T890 1561 aa26.73■■□□□ 1.87
CHMP1A-204ENST00000547687 CUL7Q14999 1698 aa26.7■■□□□ 1.87
Retrieved 100 of 20,778 RNA–protein pairs in 121.3 ms