Protein–RNA interactions for Protein: Q9UPM8

AP4E1, AP-4 complex subunit epsilon-1, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AP4E1Q9UPM8 AC133552.6-201ENST00000613406 534 ntBASIC15.25■□□□□ 0.03
AP4E1Q9UPM8 UBXN1-218ENST00000616865 1002 ntTSL 5 BASIC15.25■□□□□ 0.03
AP4E1Q9UPM8 AC027601.3-201ENST00000622907 509 ntBASIC15.25■□□□□ 0.03
AP4E1Q9UPM8 NBEA-201ENST00000310336 10794 ntAPPRIS ALT1 TSL 1 (best) BASIC15.25■□□□□ 0.03
AP4E1Q9UPM8 HIPK4-201ENST00000291823 2452 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
AP4E1Q9UPM8 PLTP-203ENST00000372431 1743 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
AP4E1Q9UPM8 UBASH3A-203ENST00000398367 1733 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
AP4E1Q9UPM8 UCN2-201ENST00000273610 1481 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
AP4E1Q9UPM8 RFTN1-203ENST00000432519 2695 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
AP4E1Q9UPM8 PCDHB14-201ENST00000239449 4828 ntAPPRIS P1 BASIC15.25■□□□□ 0.03
AP4E1Q9UPM8 PSD-209ENST00000611678 3382 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
AP4E1Q9UPM8 AC011899.2-202ENST00000438047 4302 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
AP4E1Q9UPM8 PHF24-201ENST00000242315 5718 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
AP4E1Q9UPM8 PNPLA6-202ENST00000414982 4522 ntTSL 2 BASIC15.25■□□□□ 0.03
AP4E1Q9UPM8 MROH1-207ENST00000528919 5234 ntAPPRIS P3 TSL 1 (best) BASIC15.25■□□□□ 0.03
AP4E1Q9UPM8 SRRD-201ENST00000215917 4020 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
AP4E1Q9UPM8 SHC1-204ENST00000368450 3059 ntAPPRIS ALT1 TSL 1 (best) BASIC15.25■□□□□ 0.03
AP4E1Q9UPM8 SHC1-205ENST00000368453 3062 ntAPPRIS P3 TSL 1 (best) BASIC15.25■□□□□ 0.03
AP4E1Q9UPM8 CICP4-201ENST00000447359 2812 ntBASIC15.25■□□□□ 0.03
AP4E1Q9UPM8 SLCO2B1-217ENST00000532236 2593 ntAPPRIS ALT2 TSL 2 BASIC15.25■□□□□ 0.03
AP4E1Q9UPM8 ARMCX4-202ENST00000423738 7424 ntAPPRIS P1 TSL 5 BASIC15.25■□□□□ 0.03
AP4E1Q9UPM8 ANKEF1-201ENST00000378380 5303 ntAPPRIS P1 TSL 2 BASIC15.24■□□□□ 0.03
AP4E1Q9UPM8 GPANK1-205ENST00000375906 2793 ntAPPRIS P1 TSL 2 BASIC15.24■□□□□ 0.03
AP4E1Q9UPM8 LCMT1-203ENST00000399069 1368 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
AP4E1Q9UPM8 LYRM1-203ENST00000412082 1399 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
AP4E1Q9UPM8 PDYN-AS1-201ENST00000446562 1802 ntTSL 2 BASIC15.24■□□□□ 0.03
AP4E1Q9UPM8 RUNX3-201ENST00000308873 3861 ntAPPRIS P3 TSL 1 (best) BASIC15.24■□□□□ 0.03
AP4E1Q9UPM8 OSBPL5-203ENST00000389989 3619 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
AP4E1Q9UPM8 ZNF239-203ENST00000426961 2027 ntAPPRIS P1 TSL 2 BASIC15.24■□□□□ 0.03
AP4E1Q9UPM8 SEZ6L-209ENST00000529632 6534 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
AP4E1Q9UPM8 PCDHA9-202ENST00000532602 6293 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
AP4E1Q9UPM8 UBE3A-227ENST00000638011 8742 ntAPPRIS ALT1 TSL 5 BASIC15.24■□□□□ 0.03
AP4E1Q9UPM8 EBP-205ENST00000495186 1775 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
AP4E1Q9UPM8 TPCN1-214ENST00000550785 5345 ntTSL 2 BASIC15.24■□□□□ 0.03
AP4E1Q9UPM8 MEF2D-201ENST00000348159 5965 ntAPPRIS P3 TSL 1 (best) BASIC15.24■□□□□ 0.03
AP4E1Q9UPM8 CYB561D2-202ENST00000418577 1533 ntAPPRIS P1 TSL 2 BASIC15.24■□□□□ 0.03
AP4E1Q9UPM8 AGPAT3-218ENST00000546158 2199 ntAPPRIS P1 TSL 5 BASIC15.24■□□□□ 0.03
AP4E1Q9UPM8 METTL13-202ENST00000362019 3022 ntTSL 2 BASIC15.24■□□□□ 0.03
AP4E1Q9UPM8 TTC7A-203ENST00000409245 3033 ntTSL 2 BASIC15.24■□□□□ 0.03
AP4E1Q9UPM8 AL023775.1-201ENST00000454907 1746 ntBASIC15.24■□□□□ 0.03
AP4E1Q9UPM8 SLC13A5-208ENST00000573648 1723 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
AP4E1Q9UPM8 NPPC-201ENST00000295440 500 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
AP4E1Q9UPM8 LAMTOR4-201ENST00000341942 605 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
AP4E1Q9UPM8 ANAPC11-202ENST00000357385 881 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
AP4E1Q9UPM8 TPD52L2-207ENST00000369927 1094 ntTSL 4 BASIC15.24■□□□□ 0.03
AP4E1Q9UPM8 STX1A-203ENST00000395155 783 ntTSL 2 BASIC15.24■□□□□ 0.03
AP4E1Q9UPM8 POLR2B-205ENST00000441246 3839 ntTSL 2 BASIC15.24■□□□□ 0.03
AP4E1Q9UPM8 AC113608.2-201ENST00000448379 487 ntTSL 3 BASIC15.24■□□□□ 0.03
AP4E1Q9UPM8 RASA3-IT1-201ENST00000454005 380 ntTSL 3 BASIC15.24■□□□□ 0.03
AP4E1Q9UPM8 STAG3L5P-205ENST00000473757 1255 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
AP4E1Q9UPM8 AC106786.2-201ENST00000506859 561 ntTSL 4 BASIC15.24■□□□□ 0.03
AP4E1Q9UPM8 ANO1-AS2-202ENST00000533327 498 ntTSL 3 BASIC15.24■□□□□ 0.03
AP4E1Q9UPM8 NRN1L-202ENST00000576147 681 ntAPPRIS ALT2 TSL 2 BASIC15.24■□□□□ 0.03
AP4E1Q9UPM8 TNNT1-212ENST00000588981 1163 ntAPPRIS P3 TSL 1 (best) BASIC15.24■□□□□ 0.03
AP4E1Q9UPM8 AC017083.2-201ENST00000608069 979 ntBASIC15.24■□□□□ 0.03
AP4E1Q9UPM8 AC093326.2-201ENST00000640770 729 ntTSL 5 BASIC15.24■□□□□ 0.03
AP4E1Q9UPM8 RAB37-216ENST00000613645 1653 ntAPPRIS ALT1 TSL 1 (best) BASIC15.24■□□□□ 0.03
AP4E1Q9UPM8 ELAC2-201ENST00000338034 3148 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
AP4E1Q9UPM8 CXCL12-201ENST00000343575 1857 ntAPPRIS P3 TSL 1 (best) BASIC15.24■□□□□ 0.03
AP4E1Q9UPM8 WDR1-203ENST00000382452 3142 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
AP4E1Q9UPM8 LEMD3-201ENST00000308330 4764 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
AP4E1Q9UPM8 DDX17-202ENST00000396821 4791 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
AP4E1Q9UPM8 TRAPPC8-201ENST00000283351 6226 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
AP4E1Q9UPM8 RAD51D-203ENST00000394589 2287 ntAPPRIS P1 TSL 5 BASIC15.24■□□□□ 0.03
AP4E1Q9UPM8 INTS11-248ENST00000545578 2263 ntTSL 2 BASIC15.24■□□□□ 0.03
AP4E1Q9UPM8 POU2F2-207ENST00000529067 2657 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
AP4E1Q9UPM8 SRRT-217ENST00000618411 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
AP4E1Q9UPM8 PLEKHA4-201ENST00000263265 3088 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
AP4E1Q9UPM8 AC009093.10-201ENST00000641956 1442 ntBASIC15.24■□□□□ 0.03
AP4E1Q9UPM8 CSRNP2-201ENST00000228515 4471 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
AP4E1Q9UPM8 STK17B-201ENST00000263955 5287 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
AP4E1Q9UPM8 GDI2-203ENST00000380191 2412 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
AP4E1Q9UPM8 FSIP1-201ENST00000350221 2805 ntAPPRIS P2 TSL 1 (best) BASIC15.24■□□□□ 0.03
AP4E1Q9UPM8 AGAP9-201ENST00000452145 2387 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
AP4E1Q9UPM8 CTNND2-202ENST00000458100 1962 ntTSL 5 BASIC15.24■□□□□ 0.03
AP4E1Q9UPM8 AC093520.1-201ENST00000567545 1767 ntTSL 5 BASIC15.24■□□□□ 0.03
AP4E1Q9UPM8 PPM1F-201ENST00000263212 5143 ntAPPRIS P2 TSL 1 (best) BASIC15.24■□□□□ 0.03
AP4E1Q9UPM8 MKRN3-201ENST00000314520 2337 ntAPPRIS P1 BASIC15.23■□□□□ 0.03
AP4E1Q9UPM8 UBR5-201ENST00000220959 9418 ntAPPRIS ALT1 TSL 1 (best) BASIC15.23■□□□□ 0.03
AP4E1Q9UPM8 GATA3-202ENST00000379328 3078 ntAPPRIS ALT1 TSL 1 (best) BASIC15.23■□□□□ 0.03
AP4E1Q9UPM8 SLC1A6-201ENST00000221742 1719 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
AP4E1Q9UPM8 CCDC32-201ENST00000358005 1704 ntAPPRIS P1 TSL 2 BASIC15.23■□□□□ 0.03
AP4E1Q9UPM8 CD48-203ENST00000613788 1500 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
AP4E1Q9UPM8 TMEM132E-203ENST00000631683 4379 ntAPPRIS P2 TSL 5 BASIC15.23■□□□□ 0.03
AP4E1Q9UPM8 PPL-201ENST00000345988 6238 ntAPPRIS P2 TSL 1 (best) BASIC15.23■□□□□ 0.03
AP4E1Q9UPM8 AKAP7-204ENST00000431975 2954 ntAPPRIS P1 TSL 2 BASIC15.23■□□□□ 0.03
AP4E1Q9UPM8 CDS2-203ENST00000460006 9298 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
AP4E1Q9UPM8 CDH20-201ENST00000262717 3882 ntAPPRIS P1 TSL 2 BASIC15.23■□□□□ 0.03
AP4E1Q9UPM8 C1orf228-218ENST00000458657 1818 ntAPPRIS P2 TSL 5 BASIC15.23■□□□□ 0.03
AP4E1Q9UPM8 CARTPT-201ENST00000296777 915 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
AP4E1Q9UPM8 CLRN1-203ENST00000328863 738 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
AP4E1Q9UPM8 FGF14-202ENST00000376143 744 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
AP4E1Q9UPM8 IQCF3-203ENST00000444293 450 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
AP4E1Q9UPM8 KRT223P-202ENST00000449164 1292 ntBASIC15.23■□□□□ 0.03
AP4E1Q9UPM8 LILRA5-204ENST00000486742 1078 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
AP4E1Q9UPM8 IGHV3-71-201ENST00000523324 359 ntBASIC15.23■□□□□ 0.03
AP4E1Q9UPM8 AC090099.4-201ENST00000527671 1027 ntTSL 5 BASIC15.23■□□□□ 0.03
AP4E1Q9UPM8 AC027237.1-201ENST00000560942 655 ntBASIC15.23■□□□□ 0.03
AP4E1Q9UPM8 AP005482.1-201ENST00000563722 1273 ntBASIC15.23■□□□□ 0.03
AP4E1Q9UPM8 C1QTNF1-AS1-202ENST00000581579 865 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 80.9 ms