Protein–RNA interactions for Protein: Q8IVM0

CCDC50, Coiled-coil domain-containing protein 50, humanhuman

Predictions only

Length 306 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC50Q8IVM0 KRBOX4-207ENST00000487081 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
CCDC50Q8IVM0 RNA5SP421-201ENST00000516864 134 ntBASIC15.66■□□□□ 0.1
CCDC50Q8IVM0 AP000808.2-201ENST00000542410 569 ntTSL 4 BASIC15.66■□□□□ 0.1
CCDC50Q8IVM0 LINC01089-209ENST00000542933 1220 ntTSL 3 BASIC15.66■□□□□ 0.1
CCDC50Q8IVM0 AC123567.1-201ENST00000548294 1261 ntBASIC15.66■□□□□ 0.1
CCDC50Q8IVM0 AL359711.2-201ENST00000563105 872 ntBASIC15.66■□□□□ 0.1
CCDC50Q8IVM0 GABARAP-205ENST00000573928 476 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
CCDC50Q8IVM0 IFT20-206ENST00000578122 834 ntTSL 2 BASIC15.66■□□□□ 0.1
CCDC50Q8IVM0 IFT20-208ENST00000578985 831 ntTSL 3 BASIC15.66■□□□□ 0.1
CCDC50Q8IVM0 RPS15-205ENST00000586686 562 ntTSL 5 BASIC15.66■□□□□ 0.1
CCDC50Q8IVM0 RPS15-208ENST00000591804 711 ntTSL 5 BASIC15.66■□□□□ 0.1
CCDC50Q8IVM0 RPS15-209ENST00000592588 510 ntAPPRIS P2 TSL 1 (best) BASIC15.66■□□□□ 0.1
CCDC50Q8IVM0 AC099568.2-201ENST00000609194 695 ntBASIC15.66■□□□□ 0.1
CCDC50Q8IVM0 AC009118.2-201ENST00000613275 655 ntBASIC15.66■□□□□ 0.1
CCDC50Q8IVM0 CDKN1A-208ENST00000615513 2102 ntAPPRIS P1 TSL 2 BASIC15.66■□□□□ 0.1
CCDC50Q8IVM0 FP236240.1-202ENST00000624019 601 ntTSL 3 BASIC15.66■□□□□ 0.1
CCDC50Q8IVM0 EPHB4-210ENST00000616502 3737 ntTSL 5 BASIC15.66■□□□□ 0.1
CCDC50Q8IVM0 CNOT3-201ENST00000221232 2852 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
CCDC50Q8IVM0 UACA-201ENST00000322954 6939 ntAPPRIS P3 TSL 1 (best) BASIC15.66■□□□□ 0.1
CCDC50Q8IVM0 PCK2-216ENST00000561286 2012 ntTSL 2 BASIC15.66■□□□□ 0.1
CCDC50Q8IVM0 MLLT3-210ENST00000630269 2040 ntAPPRIS ALT1 TSL 2 BASIC15.66■□□□□ 0.1
CCDC50Q8IVM0 CBWD2-204ENST00000433343 1411 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
CCDC50Q8IVM0 ATL3-203ENST00000538786 1920 ntAPPRIS ALT2 TSL 2 BASIC15.66■□□□□ 0.1
CCDC50Q8IVM0 CDKL3-206ENST00000521118 2160 ntAPPRIS ALT2 TSL 5 BASIC15.66■□□□□ 0.1
CCDC50Q8IVM0 POU6F1-208ENST00000550824 2664 ntTSL 5 BASIC15.66■□□□□ 0.1
CCDC50Q8IVM0 PCM1-202ENST00000327578 8287 ntTSL 5 BASIC15.66■□□□□ 0.1
CCDC50Q8IVM0 ZNF395-201ENST00000344423 4808 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
CCDC50Q8IVM0 DNAI1-209ENST00000614641 2598 ntAPPRIS ALT2 TSL 5 BASIC15.66■□□□□ 0.1
CCDC50Q8IVM0 HCFC2-201ENST00000229330 5734 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
CCDC50Q8IVM0 HNRNPR-212ENST00000606561 1837 ntTSL 2 BASIC15.66■□□□□ 0.1
CCDC50Q8IVM0 TM4SF19-203ENST00000446879 1582 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
CCDC50Q8IVM0 CERKL-206ENST00000410087 3208 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
CCDC50Q8IVM0 ABCG1-205ENST00000398449 2998 ntAPPRIS ALT1 TSL 1 (best) BASIC15.66■□□□□ 0.1
CCDC50Q8IVM0 CTCFL-205ENST00000423479 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
CCDC50Q8IVM0 FBXO21-202ENST00000427718 4138 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
CCDC50Q8IVM0 RABL2A-206ENST00000409842 1979 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
CCDC50Q8IVM0 ZNF747-202ENST00000395094 3504 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
CCDC50Q8IVM0 PLEKHB2-207ENST00000438882 1460 ntTSL 2 BASIC15.65■□□□□ 0.1
CCDC50Q8IVM0 CFAP74-209ENST00000493964 5247 ntAPPRIS P5 TSL 5 BASIC15.65■□□□□ 0.1
CCDC50Q8IVM0 PSMD9-207ENST00000541212 2784 ntAPPRIS P2 TSL 1 (best) BASIC15.65■□□□□ 0.1
CCDC50Q8IVM0 COL4A1-201ENST00000375820 6532 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
CCDC50Q8IVM0 LMNA-213ENST00000473598 2015 ntTSL 2 BASIC15.65■□□□□ 0.1
CCDC50Q8IVM0 PELP1-212ENST00000574876 3465 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
CCDC50Q8IVM0 LRRC34-208ENST00000522830 1781 ntAPPRIS ALT2 TSL 5 BASIC15.65■□□□□ 0.1
CCDC50Q8IVM0 PCMTD1-201ENST00000360540 4252 ntAPPRIS P1 TSL 5 BASIC15.65■□□□□ 0.1
CCDC50Q8IVM0 GFRA1-201ENST00000355422 2583 ntAPPRIS ALT2 TSL 5 BASIC15.65■□□□□ 0.1
CCDC50Q8IVM0 FRMD8-202ENST00000355991 3514 ntTSL 2 BASIC15.65■□□□□ 0.1
CCDC50Q8IVM0 PDXK-210ENST00000468090 7297 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
CCDC50Q8IVM0 MBD4-201ENST00000249910 2470 ntAPPRIS P3 TSL 1 (best) BASIC15.65■□□□□ 0.1
CCDC50Q8IVM0 C19orf57-204ENST00000586783 2454 ntAPPRIS ALT2 TSL 5 BASIC15.65■□□□□ 0.1
CCDC50Q8IVM0 CCDC140-201ENST00000295226 1699 ntAPPRIS P2 TSL 1 (best) BASIC15.65■□□□□ 0.1
CCDC50Q8IVM0 MGLL-201ENST00000265052 4642 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
CCDC50Q8IVM0 TSFM-201ENST00000323833 1218 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
CCDC50Q8IVM0 EIF5A-201ENST00000336452 1256 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
CCDC50Q8IVM0 KCNK7-201ENST00000340313 1298 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
CCDC50Q8IVM0 TNFRSF12A-202ENST00000341627 881 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
CCDC50Q8IVM0 MRPL55-215ENST00000366742 630 ntAPPRIS P1 TSL 2 BASIC15.65■□□□□ 0.1
CCDC50Q8IVM0 KLF2P2-201ENST00000416807 1039 ntBASIC15.65■□□□□ 0.1
CCDC50Q8IVM0 AC097717.1-202ENST00000457577 740 ntTSL 3 BASIC15.65■□□□□ 0.1
CCDC50Q8IVM0 AC026434.2-201ENST00000506094 1078 ntBASIC15.65■□□□□ 0.1
CCDC50Q8IVM0 FAM153B-214ENST00000512862 1071 ntAPPRIS ALT2 TSL 2 BASIC15.65■□□□□ 0.1
CCDC50Q8IVM0 ST8SIA2-202ENST00000539113 1089 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
CCDC50Q8IVM0 AC091544.3-201ENST00000556424 531 ntTSL 2 BASIC15.65■□□□□ 0.1
CCDC50Q8IVM0 AC009088.3-201ENST00000563605 357 ntTSL 3 BASIC15.65■□□□□ 0.1
CCDC50Q8IVM0 DUX4L47-201ENST00000566374 394 ntBASIC15.65■□□□□ 0.1
CCDC50Q8IVM0 AC124283.3-201ENST00000570869 594 ntBASIC15.65■□□□□ 0.1
CCDC50Q8IVM0 KBTBD4-202ENST00000430070 2372 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
CCDC50Q8IVM0 CSAD-203ENST00000379846 1962 ntTSL 5 BASIC15.65■□□□□ 0.1
CCDC50Q8IVM0 GMCL1-201ENST00000282570 4191 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
CCDC50Q8IVM0 TMEM104-201ENST00000335464 4745 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
CCDC50Q8IVM0 SEMA3F-202ENST00000413852 3212 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
CCDC50Q8IVM0 FBXL4-201ENST00000229971 2810 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
CCDC50Q8IVM0 CDH16-202ENST00000394055 2821 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
CCDC50Q8IVM0 SLC1A6-201ENST00000221742 1719 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
CCDC50Q8IVM0 TNK2-202ENST00000381916 4223 ntTSL 2 BASIC15.65■□□□□ 0.1
CCDC50Q8IVM0 GET4-202ENST00000407192 4356 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
CCDC50Q8IVM0 CLN8-205ENST00000520991 1305 ntTSL 5 BASIC15.65■□□□□ 0.1
CCDC50Q8IVM0 RIC1-203ENST00000414202 6774 ntAPPRIS P1 TSL 5 BASIC15.65■□□□□ 0.1
CCDC50Q8IVM0 GNAI2-201ENST00000266027 2169 ntTSL 2 BASIC15.65■□□□□ 0.1
CCDC50Q8IVM0 AGPAT3-218ENST00000546158 2199 ntAPPRIS P1 TSL 5 BASIC15.65■□□□□ 0.1
CCDC50Q8IVM0 AC148477.2-201ENST00000537762 3039 ntTSL 3 BASIC15.65■□□□□ 0.1
CCDC50Q8IVM0 INHBA-203ENST00000442711 1632 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
CCDC50Q8IVM0 NEU3-206ENST00000532963 1643 ntTSL 2 BASIC15.65■□□□□ 0.1
CCDC50Q8IVM0 AAMP-202ENST00000420660 1761 ntTSL 2 BASIC15.64■□□□□ 0.1
CCDC50Q8IVM0 FAAP100-201ENST00000327787 3627 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.1
CCDC50Q8IVM0 TRPV6-201ENST00000359396 2928 ntAPPRIS ALT2 TSL 1 (best) BASIC15.64■□□□□ 0.09
CCDC50Q8IVM0 ACSM1-201ENST00000307493 2051 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
CCDC50Q8IVM0 CPA5-205ENST00000466363 2099 ntAPPRIS P1 TSL 5 BASIC15.64■□□□□ 0.09
CCDC50Q8IVM0 ZNF800-203ENST00000393313 4358 ntAPPRIS P1 TSL 5 BASIC15.64■□□□□ 0.09
CCDC50Q8IVM0 ZNF619-201ENST00000314686 2233 ntTSL 2 BASIC15.64■□□□□ 0.09
CCDC50Q8IVM0 ADI1-201ENST00000327435 2391 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
CCDC50Q8IVM0 SLIT3-206ENST00000519560 9706 ntAPPRIS P3 TSL 1 (best) BASIC15.64■□□□□ 0.09
CCDC50Q8IVM0 VPS26B-201ENST00000281187 3691 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
CCDC50Q8IVM0 SPACA9-203ENST00000372136 2536 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
CCDC50Q8IVM0 ABCA2-203ENST00000371605 8151 ntAPPRIS ALT2 TSL 2 BASIC15.64■□□□□ 0.09
CCDC50Q8IVM0 TDG-209ENST00000544861 1387 ntTSL 2 BASIC15.64■□□□□ 0.09
CCDC50Q8IVM0 SMTN-202ENST00000347557 3130 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
CCDC50Q8IVM0 CARD10-203ENST00000406271 3127 ntTSL 2 BASIC15.64■□□□□ 0.09
CCDC50Q8IVM0 TMEM258-207ENST00000543510 1692 ntTSL 2 BASIC15.64■□□□□ 0.09
CCDC50Q8IVM0 PCBP2-202ENST00000359462 1814 ntAPPRIS ALT1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Retrieved 100 of 98,524 protein–RNA pairs in 85.5 ms