RNA–Protein interactions for RNA: ENST00000375820.8

COL4A1-201, Transcript of collagen type IV alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL4A1, Length 6,532 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-201ENST00000375820 DCAF8L2P0C7V8 631 aa23.9■■□□□ 1.42
COL4A1-201ENST00000375820 EHMT2Q96KQ7 1210 aa22.59■■□□□ 1.21
COL4A1-201ENST00000375820 SUPT5HO00267 1087 aaKnown RBP22.57■■□□□ 1.2
COL4A1-201ENST00000375820 SHROOM4Q9ULL8 1493 aa22.09■■□□□ 1.13
COL4A1-201ENST00000375820 PELP1Q8IZL8 1130 aaKnown RBP21.79■■□□□ 1.08
COL4A1-201ENST00000375820 TTBK1Q5TCY1 1321 aaPredicted RBP21.79■■□□□ 1.08
COL4A1-201ENST00000375820 APLP2Q06481 763 aa21.53■■□□□ 1.04
COL4A1-201ENST00000375820 FAM9AQ8IZU1 332 aaPredicted RBP21.52■■□□□ 1.04
COL4A1-201ENST00000375820 RANGAP1P46060 587 aaPredicted RBP21.41■■□□□ 1.02
COL4A1-201ENST00000375820 PCGF6Q9BYE7 350 aa21.29■■□□□ 1
COL4A1-201ENST00000375820 ERICH6Q7L0X2 663 aa21.28■■□□□ 1
COL4A1-201ENST00000375820 ATP1B4Q9UN42 357 aaPredicted RBP21.12■□□□□ 0.97
COL4A1-201ENST00000375820 YTHDC1Q96MU7 727 aaKnown RBP20.95■□□□□ 0.94
COL4A1-201ENST00000375820 NISCHQ9Y2I1 1504 aa20.92■□□□□ 0.94
COL4A1-201ENST00000375820 CCER1Q8TC90 406 aaPredicted RBP20.92■□□□□ 0.94
COL4A1-201ENST00000375820 CENPBP07199 599 aaPredicted RBP20.88■□□□□ 0.93
COL4A1-201ENST00000375820 PPARGC1BQ86YN6 1023 aaKnown RBP20.73■□□□□ 0.91
COL4A1-201ENST00000375820 MYT1Q01538 1121 aa20.68■□□□□ 0.9
COL4A1-201ENST00000375820 TRIM41Q8WV44 630 aa20.63■□□□□ 0.89
COL4A1-201ENST00000375820 NEFLP07196 543 aa20.63■□□□□ 0.89
COL4A1-201ENST00000375820 UBTFP17480 764 aaKnown RBP20.62■□□□□ 0.89
COL4A1-201ENST00000375820 ZEB1P37275 1124 aaPredicted RBP20.49■□□□□ 0.87
COL4A1-201ENST00000375820 CNGB1Q14028 1251 aaPredicted RBP20.47■□□□□ 0.87
COL4A1-201ENST00000375820 POLR3GLQ9BT43 218 aa20.46■□□□□ 0.87
COL4A1-201ENST00000375820 ITGAEP38570 1179 aa20.34■□□□□ 0.85
COL4A1-201ENST00000375820 MYT1LQ9UL68 1186 aa20.34■□□□□ 0.85
COL4A1-201ENST00000375820 CHIC1Q5VXU3 224 aa20.31■□□□□ 0.84
COL4A1-201ENST00000375820 DAXXQ9UER7 740 aaPredicted RBP20.25■□□□□ 0.83
COL4A1-201ENST00000375820 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP20.18■□□□□ 0.82
COL4A1-201ENST00000375820 HNRNPUL2Q1KMD3 747 aaKnown RBP20.18■□□□□ 0.82
COL4A1-201ENST00000375820 SLC4A1APQ9BWU0 796 aaKnown RBP20.09■□□□□ 0.81
COL4A1-201ENST00000375820 HRCP23327 699 aa19.91■□□□□ 0.78
COL4A1-201ENST00000375820 TRIM26Q12899 539 aaPredicted RBP19.9■□□□□ 0.78
COL4A1-201ENST00000375820 LOC105371045A0A1W2PR82 267 aa19.87■□□□□ 0.77
COL4A1-201ENST00000375820 CLSPNQ9HAW4 1339 aa19.84■□□□□ 0.77
COL4A1-201ENST00000375820 ZNF316A6NFI3 1004 aaPredicted RBP19.8■□□□□ 0.76
COL4A1-201ENST00000375820 BCL11AQ9H165 835 aa19.71■□□□□ 0.75
COL4A1-201ENST00000375820 BCANQ96GW7 911 aa19.69■□□□□ 0.74
COL4A1-201ENST00000375820 RTL5Q5HYW3 569 aaPredicted RBP19.68■□□□□ 0.74
COL4A1-201ENST00000375820 FAM50AQ14320 339 aaKnown RBP19.58■□□□□ 0.72
COL4A1-201ENST00000375820 NEUROD1Q13562 356 aa19.56■□□□□ 0.72
COL4A1-201ENST00000375820 DIEXFQ68CQ4 756 aaKnown RBP19.53■□□□□ 0.72
COL4A1-201ENST00000375820 TRIM52Q96A61 297 aa19.52■□□□□ 0.72
COL4A1-201ENST00000375820 SLC24A1O60721 1099 aa19.51■□□□□ 0.71
COL4A1-201ENST00000375820 ZNF326Q5BKZ1 582 aaKnown RBP19.5■□□□□ 0.71
COL4A1-201ENST00000375820 GTF3C3Q9Y5Q9 886 aa19.3■□□□□ 0.68
COL4A1-201ENST00000375820 ZBTB47Q9UFB7 747 aaPredicted RBP19.29■□□□□ 0.68
COL4A1-201ENST00000375820 CANXP27824 592 aaKnown RBP19.25■□□□□ 0.67
COL4A1-201ENST00000375820 ARID3CA6NKF2 412 aa19.23■□□□□ 0.67
COL4A1-201ENST00000375820 CDK11AQ9UQ88 783 aaPredicted RBP19.2■□□□□ 0.66
COL4A1-201ENST00000375820 FBLN2P98095 1184 aa19.19■□□□□ 0.66
COL4A1-201ENST00000375820 ANP32CO43423 234 aa19.18■□□□□ 0.66
COL4A1-201ENST00000375820 NPM2Q86SE8 214 aaKnown RBP19.16■□□□□ 0.66
COL4A1-201ENST00000375820 PABPN1Q86U42 306 aaKnown RBP eCLIP19.09■□□□□ 0.65
COL4A1-201ENST00000375820 PLPPR3Q6T4P5 718 aa19.07■□□□□ 0.64
COL4A1-201ENST00000375820 P3H3Q8IVL6 736 aa19.04■□□□□ 0.64
COL4A1-201ENST00000375820 EIF5BO60841 1220 aaKnown RBP18.96■□□□□ 0.63
COL4A1-201ENST00000375820 NEFMP07197 916 aa18.96■□□□□ 0.63
COL4A1-201ENST00000375820 ZNF777Q9ULD5 760 aaPredicted RBP18.95■□□□□ 0.62
COL4A1-201ENST00000375820 ANP32AP39687 249 aaKnown RBP18.91■□□□□ 0.62
COL4A1-201ENST00000375820 SALL2Q9Y467 1007 aaPredicted RBP18.9■□□□□ 0.62
COL4A1-201ENST00000375820 ARXQ96QS3 562 aa18.87■□□□□ 0.61
COL4A1-201ENST00000375820 CHGAP10645 457 aaKnown RBP18.82■□□□□ 0.6
COL4A1-201ENST00000375820 HSP90AA1P07900 732 aaKnown RBP18.82■□□□□ 0.6
COL4A1-201ENST00000375820 FKBP8Q14318 412 aa18.79■□□□□ 0.6
COL4A1-201ENST00000375820 SENP3Q9H4L4 574 aaPredicted RBP18.74■□□□□ 0.59
COL4A1-201ENST00000375820 FAM9BQ8IZU0 186 aa18.74■□□□□ 0.59
COL4A1-201ENST00000375820 NBR1Q14596 966 aa18.73■□□□□ 0.59
COL4A1-201ENST00000375820 ACIN1Q9UKV3 1341 aaKnown RBP18.73■□□□□ 0.59
COL4A1-201ENST00000375820 ABCC9O60706 1549 aa18.7■□□□□ 0.58
COL4A1-201ENST00000375820 ANP32BQ92688 251 aaKnown RBP18.7■□□□□ 0.58
COL4A1-201ENST00000375820 PLEKHG5O94827 1062 aa18.7■□□□□ 0.58
COL4A1-201ENST00000375820 STAG3Q9UJ98 1225 aa18.69■□□□□ 0.58
COL4A1-201ENST00000375820 HNRNPUQ00839 825 aaKnown RBP eCLIP18.66■□□□□ 0.58
COL4A1-201ENST00000375820 ESF1Q9H501 851 aaKnown RBP18.65■□□□□ 0.58
COL4A1-201ENST00000375820 SCAF1Q9H7N4 1312 aaKnown RBP18.63■□□□□ 0.57
COL4A1-201ENST00000375820 A0A0G2JS52 829 aa18.63■□□□□ 0.57
COL4A1-201ENST00000375820 DDX10Q13206 875 aaKnown RBP18.61■□□□□ 0.57
COL4A1-201ENST00000375820 IRX6P78412 446 aaPredicted RBP18.6■□□□□ 0.57
COL4A1-201ENST00000375820 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.58■□□□□ 0.56
COL4A1-201ENST00000375820 UPF2Q9HAU5 1272 aaKnown RBP18.57■□□□□ 0.56
COL4A1-201ENST00000375820 ZBTB7CA1YPR0 619 aa18.54■□□□□ 0.56
COL4A1-201ENST00000375820 SENP3-EIF4A1A0A087X0R7 540 aa18.53■□□□□ 0.56
COL4A1-201ENST00000375820 CHIC2Q9UKJ5 165 aa18.53■□□□□ 0.56
COL4A1-201ENST00000375820 HIRIP3Q9BW71 556 aaPredicted RBP18.5■□□□□ 0.55
COL4A1-201ENST00000375820 TONSLQ96HA7 1378 aa18.5■□□□□ 0.55
COL4A1-201ENST00000375820 KDM2AQ9Y2K7 1162 aa18.49■□□□□ 0.55
COL4A1-201ENST00000375820 CCDC136Q96JN2 1154 aa18.48■□□□□ 0.55
COL4A1-201ENST00000375820 TPRNQ4KMQ1 711 aa18.44■□□□□ 0.54
COL4A1-201ENST00000375820 TMC1Q8TDI8 760 aa18.44■□□□□ 0.54
COL4A1-201ENST00000375820 CSRNP3Q8WYN3 585 aa18.4■□□□□ 0.54
COL4A1-201ENST00000375820 WDR43Q15061 677 aaKnown RBP eCLIP18.4■□□□□ 0.54
COL4A1-201ENST00000375820 TULP1O00294 542 aaPredicted RBP18.37■□□□□ 0.53
COL4A1-201ENST00000375820 GOLGA6L2Q8N9W4 650 aaPredicted RBP18.36■□□□□ 0.53
COL4A1-201ENST00000375820 C14orf37Q86TY3 774 aa18.36■□□□□ 0.53
COL4A1-201ENST00000375820 MRS2Q9HD23 443 aa18.33■□□□□ 0.53
COL4A1-201ENST00000375820 GLIPR1L2Q4G1C9 344 aa18.3■□□□□ 0.52
COL4A1-201ENST00000375820 CDK11BP21127 795 aaKnown RBP18.3■□□□□ 0.52
COL4A1-201ENST00000375820 TAOK2Q9UL54 1235 aa18.29■□□□□ 0.52
COL4A1-201ENST00000375820 NPM1P06748 294 aaKnown RBP eCLIP18.27■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 146.9 ms