Protein–RNA interactions for Protein: P98160

HSPG2, Basement membrane-specific heparan sulfate proteoglycan core protein, humanhuman

Predictions only

Length 4,391 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HSPG2P98160 PSMD9-201ENST00000261817 2307 ntAPPRIS ALT1 TSL 2 BASIC8.74□□□□□ -1.01
HSPG2P98160 HORMAD1-202ENST00000361824 1692 ntAPPRIS P1 TSL 1 (best) BASIC8.74□□□□□ -1.01
HSPG2P98160 MUC1-207ENST00000368392 1032 ntTSL 1 (best) BASIC8.74□□□□□ -1.01
HSPG2P98160 MUC1-208ENST00000368393 937 ntTSL 1 (best) BASIC8.74□□□□□ -1.01
HSPG2P98160 VPREB1-202ENST00000403807 755 ntAPPRIS P3 TSL 1 (best) BASIC8.74□□□□□ -1.01
HSPG2P98160 MUC1-213ENST00000462215 1189 ntTSL 2 BASIC8.74□□□□□ -1.01
HSPG2P98160 RN7SL684P-201ENST00000465665 294 ntBASIC8.74□□□□□ -1.01
HSPG2P98160 AL713999.1-201ENST00000473363 753 ntAPPRIS P1 TSL 5 BASIC8.74□□□□□ -1.01
HSPG2P98160 AL139317.2-201ENST00000556998 158 ntBASIC8.74□□□□□ -1.01
HSPG2P98160 AC027228.1-201ENST00000560094 325 ntTSL 3 BASIC8.74□□□□□ -1.01
HSPG2P98160 LINC01002-223ENST00000633179 407 ntTSL 5 BASIC8.74□□□□□ -1.01
HSPG2P98160 RCBTB2-205ENST00000544492 2622 ntTSL 2 BASIC8.74□□□□□ -1.01
HSPG2P98160 PRDM5-202ENST00000394435 2492 ntTSL 1 (best) BASIC8.74□□□□□ -1.01
HSPG2P98160 TCP11L1-201ENST00000334274 2817 ntAPPRIS P1 TSL 1 (best) BASIC8.74□□□□□ -1.01
HSPG2P98160 LAD1-201ENST00000367313 2336 ntTSL 1 (best) BASIC8.74□□□□□ -1.01
HSPG2P98160 MICU3-201ENST00000318063 3992 ntAPPRIS P2 TSL 1 (best) BASIC8.74□□□□□ -1.01
HSPG2P98160 CTSO-201ENST00000433477 2954 ntAPPRIS P1 TSL 1 (best) BASIC8.74□□□□□ -1.01
HSPG2P98160 AL121758.1-201ENST00000488788 2714 ntAPPRIS P1 TSL 2 BASIC8.74□□□□□ -1.01
HSPG2P98160 SLC2A9-201ENST00000264784 1850 ntAPPRIS P4 TSL 1 (best) BASIC8.74□□□□□ -1.01
HSPG2P98160 ANKRD42-208ENST00000531895 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC8.74□□□□□ -1.01
HSPG2P98160 SLC22A7-202ENST00000372585 2555 ntAPPRIS P4 TSL 5 BASIC8.74□□□□□ -1.01
HSPG2P98160 HMOX2-201ENST00000219700 1621 ntAPPRIS P1 TSL 5 BASIC8.74□□□□□ -1.01
HSPG2P98160 C6orf48-202ENST00000375635 610 ntAPPRIS P1 TSL 2 BASIC8.74□□□□□ -1.01
HSPG2P98160 C6orf48-209ENST00000395789 952 ntAPPRIS P1 TSL 3 BASIC8.74□□□□□ -1.01
HSPG2P98160 IGSF23-201ENST00000402988 989 ntAPPRIS P2 TSL 3 BASIC8.74□□□□□ -1.01
HSPG2P98160 APOBEC3B-204ENST00000407298 1282 ntAPPRIS ALT2 TSL 1 (best) BASIC8.74□□□□□ -1.01
HSPG2P98160 AL512328.1-203ENST00000428480 673 ntTSL 5 BASIC8.74□□□□□ -1.01
HSPG2P98160 PRDX3P2-201ENST00000447051 611 ntBASIC8.74□□□□□ -1.01
HSPG2P98160 AL356218.1-201ENST00000450864 353 ntTSL 3 BASIC8.74□□□□□ -1.01
HSPG2P98160 AC009487.3-201ENST00000505579 560 ntTSL 4 BASIC8.74□□□□□ -1.01
HSPG2P98160 AC092284.1-201ENST00000511386 1289 ntBASIC8.74□□□□□ -1.01
HSPG2P98160 FAM120AOS-201ENST00000375412 2771 ntAPPRIS P3 TSL 1 (best) BASIC8.74□□□□□ -1.01
HSPG2P98160 EWSR1-222ENST00000629659 2446 ntTSL 5 BASIC8.74□□□□□ -1.01
HSPG2P98160 MBD4-206ENST00000507208 2194 ntAPPRIS ALT2 TSL 2 BASIC8.74□□□□□ -1.01
HSPG2P98160 TRMT11-201ENST00000334379 1565 ntAPPRIS P2 TSL 1 (best) BASIC8.74□□□□□ -1.01
HSPG2P98160 LBX1-201ENST00000370193 2900 ntAPPRIS P1 TSL 1 (best) BASIC8.74□□□□□ -1.01
HSPG2P98160 AZGP1-202ENST00000411734 2027 ntTSL 1 (best) BASIC8.74□□□□□ -1.01
HSPG2P98160 ABCB6-201ENST00000265316 3016 ntAPPRIS P1 TSL 1 (best) BASIC8.74□□□□□ -1.01
HSPG2P98160 NIPAL3-202ENST00000339255 1676 ntTSL 5 BASIC8.74□□□□□ -1.01
HSPG2P98160 ZNF514-202ENST00000411425 2755 ntAPPRIS P1 TSL 1 (best) BASIC8.74□□□□□ -1.01
HSPG2P98160 ZNF213-206ENST00000574902 3208 ntAPPRIS P1 TSL 5 BASIC8.73□□□□□ -1.01
HSPG2P98160 POP5-201ENST00000341039 913 ntTSL 2 BASIC8.73□□□□□ -1.01
HSPG2P98160 MIR632-201ENST00000385193 94 ntBASIC8.73□□□□□ -1.01
HSPG2P98160 SOD1-202ENST00000389995 865 ntTSL 3 BASIC8.73□□□□□ -1.01
HSPG2P98160 RFNG-202ENST00000429557 994 ntTSL 5 BASIC8.73□□□□□ -1.01
HSPG2P98160 AL121972.2-201ENST00000431108 556 ntTSL 4 BASIC8.73□□□□□ -1.01
HSPG2P98160 OR52X1P-201ENST00000446117 914 ntBASIC8.73□□□□□ -1.01
HSPG2P98160 AC018845.3-201ENST00000562536 516 ntTSL 3 BASIC8.73□□□□□ -1.01
HSPG2P98160 ARL17B-203ENST00000570618 1140 ntTSL 2 BASIC8.73□□□□□ -1.01
HSPG2P98160 Metazoa_SRP.147-201ENST00000576563 312 ntBASIC8.73□□□□□ -1.01
HSPG2P98160 DRG2-220ENST00000583355 891 ntTSL 3 BASIC8.73□□□□□ -1.01
HSPG2P98160 SNX20-205ENST00000610485 557 ntTSL 5 BASIC8.73□□□□□ -1.01
HSPG2P98160 SPAG6-203ENST00000376624 2605 ntAPPRIS P1 TSL 1 (best) BASIC8.73□□□□□ -1.01
HSPG2P98160 PCDHA1-201ENST00000378133 2726 ntBASIC8.73□□□□□ -1.01
HSPG2P98160 RNF157-AS1-204ENST00000590137 1812 ntTSL 2 BASIC8.73□□□□□ -1.01
HSPG2P98160 TNIP1-220ENST00000610535 2726 ntTSL 5 BASIC8.73□□□□□ -1.01
HSPG2P98160 PITPNB-202ENST00000335272 2926 ntAPPRIS P3 TSL 1 (best) BASIC8.73□□□□□ -1.01
HSPG2P98160 GLUD1-201ENST00000277865 3039 ntAPPRIS P1 TSL 1 (best) BASIC8.73□□□□□ -1.01
HSPG2P98160 AL138752.2-201ENST00000540557 2591 ntAPPRIS P1 TSL 5 BASIC8.73□□□□□ -1.01
HSPG2P98160 DEPDC5-203ENST00000400242 2395 ntTSL 1 (best) BASIC8.73□□□□□ -1.01
HSPG2P98160 SULT1A1-203ENST00000395607 1386 ntAPPRIS P1 TSL 5 BASIC8.73□□□□□ -1.01
HSPG2P98160 FLAD1-202ENST00000295530 1211 ntTSL 1 (best) BASIC8.73□□□□□ -1.01
HSPG2P98160 CRCT1-201ENST00000368790 700 ntAPPRIS P1 TSL 1 (best) BASIC8.73□□□□□ -1.01
HSPG2P98160 IGHV1-3-201ENST00000390595 395 ntAPPRIS P1 BASIC8.73□□□□□ -1.01
HSPG2P98160 IQCF4-203ENST00000428561 420 ntBASIC8.73□□□□□ -1.01
HSPG2P98160 AC022784.6-202ENST00000523246 674 ntTSL 5 BASIC8.73□□□□□ -1.01
HSPG2P98160 CARHSP1-208ENST00000567554 598 ntAPPRIS P1 TSL 2 BASIC8.73□□□□□ -1.01
HSPG2P98160 RN7SL455P-201ENST00000580629 282 ntBASIC8.73□□□□□ -1.01
HSPG2P98160 LINC02081-201ENST00000586185 877 ntTSL 3 BASIC8.73□□□□□ -1.01
HSPG2P98160 AL162731.1-201ENST00000613248 876 ntTSL 3 BASIC8.73□□□□□ -1.01
HSPG2P98160 MAGEA2-203ENST00000611557 2024 ntAPPRIS P1 TSL 5 BASIC8.73□□□□□ -1.01
HSPG2P98160 CDCA3-207ENST00000538862 1943 ntAPPRIS P1 TSL 1 (best) BASIC8.73□□□□□ -1.01
HSPG2P98160 VIPAS39-208ENST00000556412 1832 ntTSL 2 BASIC8.73□□□□□ -1.01
HSPG2P98160 H2AFV-201ENST00000222690 3804 ntAPPRIS ALT1 TSL 2 BASIC8.73□□□□□ -1.01
HSPG2P98160 WDSUB1-201ENST00000358147 1535 ntTSL 1 (best) BASIC8.73□□□□□ -1.01
HSPG2P98160 WARS-232ENST00000556645 2508 ntTSL 5 BASIC8.73□□□□□ -1.01
HSPG2P98160 KIFC2-201ENST00000301332 3646 ntAPPRIS P1 TSL 1 (best) BASIC8.73□□□□□ -1.01
HSPG2P98160 BRF1-206ENST00000446501 2858 ntTSL 2 BASIC8.73□□□□□ -1.01
HSPG2P98160 SCYL1-206ENST00000525364 2584 ntTSL 5 BASIC8.73□□□□□ -1.01
HSPG2P98160 PDGFRL-201ENST00000251630 1901 ntAPPRIS P1 TSL 5 BASIC8.73□□□□□ -1.01
HSPG2P98160 STOML1-206ENST00000561656 1833 ntTSL 3 BASIC8.73□□□□□ -1.01
HSPG2P98160 CELA3A-201ENST00000290122 887 ntAPPRIS P1 TSL 1 (best) BASIC8.73□□□□□ -1.01
HSPG2P98160 HPGD-201ENST00000296521 1171 ntTSL 1 (best) BASIC8.73□□□□□ -1.01
HSPG2P98160 NSMCE1-201ENST00000361439 1067 ntAPPRIS P1 TSL 1 (best) BASIC8.73□□□□□ -1.01
HSPG2P98160 DUX4L31-201ENST00000446466 1136 ntBASIC8.73□□□□□ -1.01
HSPG2P98160 CD44-224ENST00000526669 870 ntTSL 5 BASIC8.73□□□□□ -1.01
HSPG2P98160 AC004923.1-201ENST00000527543 776 ntTSL 5 BASIC8.73□□□□□ -1.01
HSPG2P98160 BAK1P2-201ENST00000532665 631 ntBASIC8.73□□□□□ -1.01
HSPG2P98160 AL139316.1-201ENST00000555643 568 ntTSL 3 BASIC8.73□□□□□ -1.01
HSPG2P98160 MAX-218ENST00000557746 571 ntTSL 4 BASIC8.73□□□□□ -1.01
HSPG2P98160 MAFG-AS1-202ENST00000583492 969 ntTSL 1 (best) BASIC8.73□□□□□ -1.01
HSPG2P98160 ZNF571-AS1-204ENST00000587121 822 ntTSL 3 BASIC8.73□□□□□ -1.01
HSPG2P98160 Metazoa_SRP.144-201ENST00000617007 311 ntBASIC8.73□□□□□ -1.01
HSPG2P98160 SIPA1-201ENST00000394224 3628 ntAPPRIS P1 TSL 1 (best) BASIC8.73□□□□□ -1.01
HSPG2P98160 SEMA3B-212ENST00000616701 2958 ntAPPRIS P3 TSL 1 (best) BASIC8.73□□□□□ -1.01
HSPG2P98160 CRK-202ENST00000398970 3675 ntTSL 1 (best) BASIC8.73□□□□□ -1.01
HSPG2P98160 EWSR1-206ENST00000397938 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC8.73□□□□□ -1.01
HSPG2P98160 DIABLO-208ENST00000464942 2569 ntTSL 1 (best) BASIC8.73□□□□□ -1.01
HSPG2P98160 SERPINA4-203ENST00000557004 2012 ntAPPRIS P1 TSL 1 (best) BASIC8.73□□□□□ -1.01
HSPG2P98160 PCDHA14-201ENST00000506751 2298 ntBASIC8.73□□□□□ -1.01
Retrieved 100 of 98,524 protein–RNA pairs in 84.4 ms