RNA–Protein interactions for RNA: ENST00000394224.3

SIPA1-201, Transcript of signal-induced proliferation-associated 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SIPA1, Length 3,628 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SIPA1-201ENST00000394224 NISCHQ9Y2I1 1504 aa31.83■■■□□ 2.69
SIPA1-201ENST00000394224 SHROOM4Q9ULL8 1493 aa29.49■■■□□ 2.31
SIPA1-201ENST00000394224 SUPT5HO00267 1087 aaKnown RBP29.23■■■□□ 2.27
SIPA1-201ENST00000394224 DCAF8L2P0C7V8 631 aa28.74■■■□□ 2.19
SIPA1-201ENST00000394224 PCGF6Q9BYE7 350 aa28.19■■■□□ 2.1
SIPA1-201ENST00000394224 PPARGC1BQ86YN6 1023 aaKnown RBP28.03■■■□□ 2.08
SIPA1-201ENST00000394224 EHMT2Q96KQ7 1210 aa27.8■■■□□ 2.04
SIPA1-201ENST00000394224 CHIC1Q5VXU3 224 aa27.75■■■□□ 2.03
SIPA1-201ENST00000394224 HRCP23327 699 aa27.73■■■□□ 2.03
SIPA1-201ENST00000394224 LOC105371045A0A1W2PR82 267 aa27.71■■■□□ 2.03
SIPA1-201ENST00000394224 MYO15BQ96JP2 1530 aa27.62■■■□□ 2.01
SIPA1-201ENST00000394224 FAM9AQ8IZU1 332 aaPredicted RBP27.31■■□□□ 1.96
SIPA1-201ENST00000394224 TTBK1Q5TCY1 1321 aaPredicted RBP26.86■■□□□ 1.89
SIPA1-201ENST00000394224 ZCCHC6Q5VYS8 1495 aaKnown RBP26.82■■□□□ 1.88
SIPA1-201ENST00000394224 TRIM26Q12899 539 aaPredicted RBP26.72■■□□□ 1.87
SIPA1-201ENST00000394224 TRIM41Q8WV44 630 aa26.64■■□□□ 1.86
SIPA1-201ENST00000394224 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP26.34■■□□□ 1.81
SIPA1-201ENST00000394224 DCAF1Q9Y4B6 1507 aa26.23■■□□□ 1.79
SIPA1-201ENST00000394224 SCAF1Q9H7N4 1312 aaKnown RBP26.22■■□□□ 1.79
SIPA1-201ENST00000394224 CCER1Q8TC90 406 aaPredicted RBP26.16■■□□□ 1.78
SIPA1-201ENST00000394224 ZEB1P37275 1124 aaPredicted RBP26.01■■□□□ 1.75
SIPA1-201ENST00000394224 YTHDC1Q96MU7 727 aaKnown RBP25.97■■□□□ 1.75
SIPA1-201ENST00000394224 RANGAP1P46060 587 aaPredicted RBP25.91■■□□□ 1.74
SIPA1-201ENST00000394224 CCDC180Q9P1Z9 1646 aa25.9■■□□□ 1.74
SIPA1-201ENST00000394224 NEUROD1Q13562 356 aa25.82■■□□□ 1.72
SIPA1-201ENST00000394224 SCRIBQ14160 1630 aa25.81■■□□□ 1.72
SIPA1-201ENST00000394224 RSF1Q96T23 1441 aaPredicted RBP25.76■■□□□ 1.71
SIPA1-201ENST00000394224 GTF3C3Q9Y5Q9 886 aa25.73■■□□□ 1.71
SIPA1-201ENST00000394224 DIEXFQ68CQ4 756 aaKnown RBP25.68■■□□□ 1.7
SIPA1-201ENST00000394224 UBTFP17480 764 aaKnown RBP25.61■■□□□ 1.69
SIPA1-201ENST00000394224 RB1CC1Q8TDY2 1594 aa25.59■■□□□ 1.69
SIPA1-201ENST00000394224 ACIN1Q9UKV3 1341 aaKnown RBP25.57■■□□□ 1.68
SIPA1-201ENST00000394224 HNRNPUL2Q1KMD3 747 aaKnown RBP25.55■■□□□ 1.68
SIPA1-201ENST00000394224 ABCC9O60706 1549 aa25.51■■□□□ 1.67
SIPA1-201ENST00000394224 PELP1Q8IZL8 1130 aaKnown RBP25.49■■□□□ 1.67
SIPA1-201ENST00000394224 CECR2Q9BXF3 1484 aa25.47■■□□□ 1.67
SIPA1-201ENST00000394224 CENPBP07199 599 aaPredicted RBP25.41■■□□□ 1.66
SIPA1-201ENST00000394224 MROH2BQ7Z745 1585 aa25.15■■□□□ 1.62
SIPA1-201ENST00000394224 MIER1Q8N108 512 aa25.15■■□□□ 1.62
SIPA1-201ENST00000394224 PABPN1Q86U42 306 aaKnown RBP eCLIP25.14■■□□□ 1.62
SIPA1-201ENST00000394224 ZNF316A6NFI3 1004 aaPredicted RBP25.08■■□□□ 1.61
SIPA1-201ENST00000394224 ABCC8Q09428 1581 aa25.03■■□□□ 1.6
SIPA1-201ENST00000394224 ITGAEP38570 1179 aa25.02■■□□□ 1.6
SIPA1-201ENST00000394224 SOGA1O94964 1423 aa25.02■■□□□ 1.6
SIPA1-201ENST00000394224 WIZO95785 1651 aa25■■□□□ 1.59
SIPA1-201ENST00000394224 APLP2Q06481 763 aa25■■□□□ 1.59
SIPA1-201ENST00000394224 CCDC88BA6NC98 1476 aa24.97■■□□□ 1.59
SIPA1-201ENST00000394224 CSRNP3Q8WYN3 585 aa24.96■■□□□ 1.59
SIPA1-201ENST00000394224 CEP162Q5TB80 1403 aa24.93■■□□□ 1.58
SIPA1-201ENST00000394224 RUSC2Q8N2Y8 1516 aa24.89■■□□□ 1.58
SIPA1-201ENST00000394224 BCANQ96GW7 911 aa24.74■■□□□ 1.55
SIPA1-201ENST00000394224 ATP1B4Q9UN42 357 aaPredicted RBP24.6■■□□□ 1.53
SIPA1-201ENST00000394224 HIRIP3Q9BW71 556 aaPredicted RBP24.54■■□□□ 1.52
SIPA1-201ENST00000394224 KCNH8Q96L42 1107 aa24.52■■□□□ 1.52
SIPA1-201ENST00000394224 TNIKQ9UKE5 1360 aa24.52■■□□□ 1.52
SIPA1-201ENST00000394224 CLIP1P30622 1438 aa24.42■■□□□ 1.5
SIPA1-201ENST00000394224 KANK4Q5T7N3 995 aaPredicted RBP24.4■■□□□ 1.5
SIPA1-201ENST00000394224 SUPT16HQ9Y5B9 1047 aaKnown RBP24.32■■□□□ 1.48
SIPA1-201ENST00000394224 WRNQ14191 1432 aaPredicted RBP eCLIP24.32■■□□□ 1.48
SIPA1-201ENST00000394224 P3H3Q8IVL6 736 aa24.31■■□□□ 1.48
SIPA1-201ENST00000394224 GOLGA3Q08378 1498 aa24.31■■□□□ 1.48
SIPA1-201ENST00000394224 BAZ1AQ9NRL2 1556 aaPredicted RBP24.3■■□□□ 1.48
SIPA1-201ENST00000394224 NACADO15069 1562 aa24.28■■□□□ 1.48
SIPA1-201ENST00000394224 DDX10Q13206 875 aaKnown RBP24.27■■□□□ 1.48
SIPA1-201ENST00000394224 FAM50AQ14320 339 aaKnown RBP24.22■■□□□ 1.47
SIPA1-201ENST00000394224 TRIM52Q96A61 297 aa24.22■■□□□ 1.47
SIPA1-201ENST00000394224 CNGB1Q14028 1251 aaPredicted RBP24.2■■□□□ 1.46
SIPA1-201ENST00000394224 RAPGEF2Q9Y4G8 1499 aa24.19■■□□□ 1.46
SIPA1-201ENST00000394224 FKBP8Q14318 412 aa24.17■■□□□ 1.46
SIPA1-201ENST00000394224 SMARCA2P51531 1590 aa24.17■■□□□ 1.46
SIPA1-201ENST00000394224 SIN3AQ96ST3 1273 aa24.16■■□□□ 1.46
SIPA1-201ENST00000394224 TOP2AP11388 1531 aaKnown RBP24.13■■□□□ 1.45
SIPA1-201ENST00000394224 MYT1Q01538 1121 aa24.08■■□□□ 1.45
SIPA1-201ENST00000394224 IRX6P78412 446 aaPredicted RBP24.07■■□□□ 1.44
SIPA1-201ENST00000394224 VPS8Q8N3P4 1428 aa24.05■■□□□ 1.44
SIPA1-201ENST00000394224 TSHZ2Q9NRE2 1034 aa24.05■■□□□ 1.44
SIPA1-201ENST00000394224 CEP164Q9UPV0 1460 aa24.04■■□□□ 1.44
SIPA1-201ENST00000394224 SMARCA4P51532 1647 aa24.03■■□□□ 1.44
SIPA1-201ENST00000394224 DHX57Q6P158 1386 aaKnown RBP24.02■■□□□ 1.44
SIPA1-201ENST00000394224 EIF4G1Q04637 1599 aaKnown RBP24.01■■□□□ 1.43
SIPA1-201ENST00000394224 EEA1Q15075 1411 aa23.99■■□□□ 1.43
SIPA1-201ENST00000394224 SENP3-EIF4A1A0A087X0R7 540 aa23.97■■□□□ 1.43
SIPA1-201ENST00000394224 SYNJ1O43426 1573 aa23.93■■□□□ 1.42
SIPA1-201ENST00000394224 NEFLP07196 543 aa23.89■■□□□ 1.42
SIPA1-201ENST00000394224 ARID3CA6NKF2 412 aa23.85■■□□□ 1.41
SIPA1-201ENST00000394224 KIF21BO75037 1637 aa23.81■■□□□ 1.4
SIPA1-201ENST00000394224 RAB3GAP2Q9H2M9 1393 aa23.75■■□□□ 1.39
SIPA1-201ENST00000394224 BAZ1BQ9UIG0 1483 aaKnown RBP23.75■■□□□ 1.39
SIPA1-201ENST00000394224 CCNB3Q8WWL7 1395 aa23.73■■□□□ 1.39
SIPA1-201ENST00000394224 ANP32EQ9BTT0 268 aa23.73■■□□□ 1.39
SIPA1-201ENST00000394224 ANP32CO43423 234 aa23.71■■□□□ 1.39
SIPA1-201ENST00000394224 POLR3GLQ9BT43 218 aa23.7■■□□□ 1.38
SIPA1-201ENST00000394224 ARAP1Q96P48 1450 aa23.69■■□□□ 1.38
SIPA1-201ENST00000394224 HNRNPUQ00839 825 aaKnown RBP eCLIP23.66■■□□□ 1.38
SIPA1-201ENST00000394224 CHIC2Q9UKJ5 165 aa23.65■■□□□ 1.38
SIPA1-201ENST00000394224 RBM19Q9Y4C8 960 aaKnown RBP23.63■■□□□ 1.37
SIPA1-201ENST00000394224 ATAD2BQ9ULI0 1458 aa23.59■■□□□ 1.37
SIPA1-201ENST00000394224 ERICH6Q7L0X2 663 aa23.56■■□□□ 1.36
SIPA1-201ENST00000394224 FAM9BQ8IZU0 186 aa23.53■■□□□ 1.36
SIPA1-201ENST00000394224 CLSPNQ9HAW4 1339 aa23.53■■□□□ 1.36
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms