Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 SPG21-203ENST00000433215 1613 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
SOX3P41225 AC090099.1-203ENST00000527059 2945 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
SOX3P41225 OIT3-202ENST00000622652 1602 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
SOX3P41225 HM13-201ENST00000335574 1809 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
SOX3P41225 E2F6-201ENST00000307236 3317 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
SOX3P41225 ANKRD35-201ENST00000355594 3342 ntAPPRIS P1 TSL 2 BASIC13.97□□□□□ -0.17
SOX3P41225 MED4-201ENST00000258648 2022 ntAPPRIS P3 TSL 1 (best) BASIC13.97□□□□□ -0.17
SOX3P41225 HSD17B6-205ENST00000554643 1751 ntAPPRIS P1 TSL 5 BASIC13.96□□□□□ -0.17
SOX3P41225 GAS2L2-202ENST00000604641 3014 ntAPPRIS P2 TSL 1 (best) BASIC13.96□□□□□ -0.17
SOX3P41225 FBXL16-201ENST00000324361 3411 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
SOX3P41225 CROT-201ENST00000331536 3175 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
SOX3P41225 POMP-201ENST00000380842 1330 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
SOX3P41225 AP000845.1-201ENST00000581677 2131 ntBASIC13.96□□□□□ -0.17
SOX3P41225 SLC7A4-202ENST00000403586 2307 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
SOX3P41225 GLIS2-202ENST00000433375 3705 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
SOX3P41225 WDR59-201ENST00000262144 5898 ntAPPRIS P1 TSL 5 BASIC13.96□□□□□ -0.17
SOX3P41225 PLAGL1-201ENST00000354765 3663 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
SOX3P41225 PXYLP1-201ENST00000286353 3281 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
SOX3P41225 SFXN3-201ENST00000224807 3089 ntTSL 5 BASIC13.96□□□□□ -0.17
SOX3P41225 HIST1H2AG-201ENST00000359193 2250 ntAPPRIS P1 BASIC13.96□□□□□ -0.17
SOX3P41225 SMPDL3A-201ENST00000368440 1851 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
SOX3P41225 ANXA8L1-208ENST00000622769 1861 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
SOX3P41225 SLAIN1-216ENST00000488699 1461 ntTSL 2 BASIC13.96□□□□□ -0.17
SOX3P41225 PFDN5-202ENST00000334478 586 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
SOX3P41225 CDK2-202ENST00000354056 1260 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
SOX3P41225 AC007319.1-202ENST00000412276 829 ntTSL 5 BASIC13.96□□□□□ -0.17
SOX3P41225 AL445430.1-201ENST00000419796 699 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
SOX3P41225 LARGE-AS1-202ENST00000424291 1065 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
SOX3P41225 FAM21FP-201ENST00000426241 1131 ntBASIC13.96□□□□□ -0.17
SOX3P41225 POLR2F-208ENST00000470701 584 ntTSL 3 BASIC13.96□□□□□ -0.17
SOX3P41225 RCN1-210ENST00000532942 1191 ntAPPRIS ALT2 TSL 2 BASIC13.96□□□□□ -0.17
SOX3P41225 AL355102.5-201ENST00000554769 572 ntTSL 4 BASIC13.96□□□□□ -0.17
SOX3P41225 AC135178.3-201ENST00000583963 531 ntTSL 4 BASIC13.96□□□□□ -0.17
SOX3P41225 ANKS3-227ENST00000592711 580 ntTSL 4 BASIC13.96□□□□□ -0.17
SOX3P41225 CCL5-202ENST00000605140 1244 ntAPPRIS P1 TSL 5 BASIC13.96□□□□□ -0.17
SOX3P41225 WBP4-201ENST00000379487 2623 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
SOX3P41225 LGALS8-203ENST00000341872 2437 ntAPPRIS ALT2 TSL 1 (best) BASIC13.96□□□□□ -0.17
SOX3P41225 PTPRU-205ENST00000460170 5337 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
SOX3P41225 NEK11-205ENST00000507910 1841 ntAPPRIS ALT2 TSL 1 (best) BASIC13.96□□□□□ -0.17
SOX3P41225 HLA-DQB1-205ENST00000434651 1642 ntAPPRIS P1 BASIC13.96□□□□□ -0.17
SOX3P41225 CEP76-201ENST00000262127 2939 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.18
SOX3P41225 COL25A1-203ENST00000399132 2724 ntAPPRIS P4 TSL 5 BASIC13.96□□□□□ -0.18
SOX3P41225 AC018529.2-202ENST00000611482 3087 ntBASIC13.96□□□□□ -0.18
SOX3P41225 WNT9B-202ENST00000393461 2654 ntTSL 2 BASIC13.96□□□□□ -0.18
SOX3P41225 ADAM15-206ENST00000368412 2804 ntAPPRIS ALT2 TSL 1 (best) BASIC13.96□□□□□ -0.18
SOX3P41225 MEX3B-201ENST00000329713 3528 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
SOX3P41225 CKMT2-201ENST00000254035 1512 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
SOX3P41225 SNX30-201ENST00000374232 7622 ntAPPRIS P1 TSL 5 BASIC13.95□□□□□ -0.18
SOX3P41225 GFRA2-204ENST00000518077 1503 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
SOX3P41225 AL137783.1-201ENST00000623494 1896 ntBASIC13.95□□□□□ -0.18
SOX3P41225 FAM219A-209ENST00000445726 3644 ntAPPRIS ALT1 TSL 2 BASIC13.95□□□□□ -0.18
SOX3P41225 CCDC140-201ENST00000295226 1699 ntAPPRIS P2 TSL 1 (best) BASIC13.95□□□□□ -0.18
SOX3P41225 DNAJA1-201ENST00000330899 2381 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
SOX3P41225 ACVR1B-206ENST00000542485 2362 ntTSL 2 BASIC13.95□□□□□ -0.18
SOX3P41225 UBTF-204ENST00000436088 2738 ntAPPRIS P1 TSL 2 BASIC13.95□□□□□ -0.18
SOX3P41225 FRMD3-201ENST00000304195 5297 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
SOX3P41225 ACTN2-206ENST00000542672 4906 ntAPPRIS ALT1 TSL 1 (best) BASIC13.95□□□□□ -0.18
SOX3P41225 DENND4C-209ENST00000602925 6831 ntAPPRIS P1 TSL 5 BASIC13.95□□□□□ -0.18
SOX3P41225 SFMBT1-201ENST00000394752 4548 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
SOX3P41225 PMPCB-201ENST00000249269 2472 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
SOX3P41225 C1QB-201ENST00000314933 1044 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
SOX3P41225 UMODL1-AS1-201ENST00000329015 2141 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
SOX3P41225 SPAG11B-203ENST00000359758 612 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
SOX3P41225 MTHFSD-202ENST00000381214 1210 ntAPPRIS ALT2 TSL 1 (best) BASIC13.95□□□□□ -0.18
SOX3P41225 IGLV2-23-201ENST00000390306 502 ntAPPRIS P1 BASIC13.95□□□□□ -0.18
SOX3P41225 MIR1202-201ENST00000408529 83 ntBASIC13.95□□□□□ -0.18
SOX3P41225 ZNF815P-202ENST00000422825 805 ntTSL 5 BASIC13.95□□□□□ -0.18
SOX3P41225 AL035588.1-201ENST00000438967 408 ntTSL 3 BASIC13.95□□□□□ -0.18
SOX3P41225 AC245100.3-201ENST00000441281 285 ntBASIC13.95□□□□□ -0.18
SOX3P41225 YBX1P6-201ENST00000442962 1002 ntBASIC13.95□□□□□ -0.18
SOX3P41225 DUX4L47-201ENST00000566374 394 ntBASIC13.95□□□□□ -0.18
SOX3P41225 AL160412.1-202ENST00000616819 663 ntTSL 4 BASIC13.95□□□□□ -0.18
SOX3P41225 SERF2-217ENST00000630046 862 ntTSL 5 BASIC13.95□□□□□ -0.18
SOX3P41225 AL603764.1-201ENST00000636452 321 ntBASIC13.95□□□□□ -0.18
SOX3P41225 AC006453.4-201ENST00000636949 1252 ntBASIC13.95□□□□□ -0.18
SOX3P41225 AC008687.7-202ENST00000637404 953 ntBASIC13.95□□□□□ -0.18
SOX3P41225 SYNE2-228ENST00000639659 1290 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
SOX3P41225 AL033527.4-201ENST00000641026 673 ntBASIC13.95□□□□□ -0.18
SOX3P41225 RTEL1-203ENST00000360203 4623 ntAPPRIS P1 TSL 5 BASIC13.95□□□□□ -0.18
SOX3P41225 MBD1-201ENST00000269468 3259 ntAPPRIS P3 TSL 5 BASIC13.95□□□□□ -0.18
SOX3P41225 DNER-201ENST00000341772 3260 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
SOX3P41225 C5orf38-207ENST00000515640 1441 ntAPPRIS ALT2 TSL 3 BASIC13.95□□□□□ -0.18
SOX3P41225 REXO1L2P-201ENST00000425429 2069 ntBASIC13.95□□□□□ -0.18
SOX3P41225 SELPLG-201ENST00000228463 1704 ntAPPRIS ALT2 TSL 2 BASIC13.95□□□□□ -0.18
SOX3P41225 MLST8-201ENST00000301724 1735 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
SOX3P41225 CDH20-202ENST00000536675 2855 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
SOX3P41225 DNASE1L1-206ENST00000393638 2665 ntAPPRIS P1 TSL 5 BASIC13.95□□□□□ -0.18
SOX3P41225 KCNJ5-203ENST00000533599 1350 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
SOX3P41225 PELP1-212ENST00000574876 3465 ntAPPRIS ALT2 TSL 1 (best) BASIC13.95□□□□□ -0.18
SOX3P41225 NTRK2-201ENST00000277120 8633 ntAPPRIS P3 TSL 1 (best) BASIC13.95□□□□□ -0.18
SOX3P41225 SIDT1-201ENST00000264852 5080 ntAPPRIS P1 TSL 2 BASIC13.95□□□□□ -0.18
SOX3P41225 ZPBP2-202ENST00000377940 2177 ntAPPRIS ALT2 TSL 1 (best) BASIC13.95□□□□□ -0.18
SOX3P41225 AL354989.2-201ENST00000435838 1540 ntBASIC13.95□□□□□ -0.18
SOX3P41225 TEX28-203ENST00000617225 1525 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
SOX3P41225 SOX21-AS1-201ENST00000438290 3287 ntTSL 2 BASIC13.95□□□□□ -0.18
SOX3P41225 ACE-201ENST00000290863 2479 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
SOX3P41225 FARS2-202ENST00000324331 1692 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
SOX3P41225 TAF8-203ENST00000372982 1805 ntTSL 2 BASIC13.94□□□□□ -0.18
SOX3P41225 LBH-201ENST00000395323 2933 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
SOX3P41225 AL591623.1-201ENST00000417786 1960 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
Retrieved 100 of 98,524 protein–RNA pairs in 33.8 ms