RNA–Protein interactions for RNA: ENST00000368440.4

SMPDL3A-201, Transcript of sphingomyelin phosphodiesterase acid like 3A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMPDL3A, Length 1,851 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPDL3A-201ENST00000368440 NISCHQ9Y2I1 1504 aa36.56■■■■□ 3.44
SMPDL3A-201ENST00000368440 CCDC180Q9P1Z9 1646 aa32.48■■■□□ 2.79
SMPDL3A-201ENST00000368440 ABCC9O60706 1549 aa31.66■■■□□ 2.66
SMPDL3A-201ENST00000368440 ZCCHC6Q5VYS8 1495 aaKnown RBP30.5■■■□□ 2.47
SMPDL3A-201ENST00000368440 RB1CC1Q8TDY2 1594 aa30.47■■■□□ 2.47
SMPDL3A-201ENST00000368440 NACADO15069 1562 aa30.45■■■□□ 2.47
SMPDL3A-201ENST00000368440 DCAF8L2P0C7V8 631 aa30.45■■■□□ 2.47
SMPDL3A-201ENST00000368440 MYO15BQ96JP2 1530 aa30.29■■■□□ 2.44
SMPDL3A-201ENST00000368440 DCAF1Q9Y4B6 1507 aa30.22■■■□□ 2.43
SMPDL3A-201ENST00000368440 UNC13AQ9UPW8 1703 aa29.92■■■□□ 2.38
SMPDL3A-201ENST00000368440 SCRIBQ14160 1630 aa29.68■■■□□ 2.34
SMPDL3A-201ENST00000368440 BICRAQ9NZM4 1560 aa29.62■■■□□ 2.33
SMPDL3A-201ENST00000368440 PABPN1Q86U42 306 aaKnown RBP eCLIP29.58■■■□□ 2.33
SMPDL3A-201ENST00000368440 SHROOM4Q9ULL8 1493 aa29.2■■■□□ 2.26
SMPDL3A-201ENST00000368440 DNAJC5BQ9UF47 199 aa28.94■■■□□ 2.22
SMPDL3A-201ENST00000368440 EIF4G1Q04637 1599 aaKnown RBP28.79■■■□□ 2.2
SMPDL3A-201ENST00000368440 CC2D2AQ9P2K1 1620 aa28.66■■■□□ 2.18
SMPDL3A-201ENST00000368440 CECR2Q9BXF3 1484 aa28.51■■■□□ 2.15
SMPDL3A-201ENST00000368440 SMARCA4P51532 1647 aa28.38■■■□□ 2.13
SMPDL3A-201ENST00000368440 BAZ1AQ9NRL2 1556 aaPredicted RBP28.32■■■□□ 2.12
SMPDL3A-201ENST00000368440 MROH2BQ7Z745 1585 aa28.22■■■□□ 2.11
SMPDL3A-201ENST00000368440 ATAD2BQ9ULI0 1458 aa28.16■■■□□ 2.1
SMPDL3A-201ENST00000368440 SMARCA2P51531 1590 aa28.11■■■□□ 2.09
SMPDL3A-201ENST00000368440 NCAPD3P42695 1498 aa28.08■■■□□ 2.09
SMPDL3A-201ENST00000368440 PEG3Q9GZU2 1588 aa28.07■■■□□ 2.08
SMPDL3A-201ENST00000368440 HMGXB3Q12766 1538 aa27.99■■■□□ 2.07
SMPDL3A-201ENST00000368440 WIZO95785 1651 aa27.96■■■□□ 2.07
SMPDL3A-201ENST00000368440 BAZ1BQ9UIG0 1483 aaKnown RBP27.93■■■□□ 2.06
SMPDL3A-201ENST00000368440 RSF1Q96T23 1441 aaPredicted RBP27.9■■■□□ 2.06
SMPDL3A-201ENST00000368440 TOP2AP11388 1531 aaKnown RBP27.61■■■□□ 2.01
SMPDL3A-201ENST00000368440 NESP48681 1621 aa27.46■■□□□ 1.99
SMPDL3A-201ENST00000368440 LAMC3Q9Y6N6 1575 aa27.36■■□□□ 1.97
SMPDL3A-201ENST00000368440 CCDC88BA6NC98 1476 aa27.28■■□□□ 1.96
SMPDL3A-201ENST00000368440 SUPT5HO00267 1087 aaKnown RBP27.27■■□□□ 1.96
SMPDL3A-201ENST00000368440 CADPSQ9ULU8 1353 aa27.26■■□□□ 1.96
SMPDL3A-201ENST00000368440 ERCC6Q03468 1493 aa27.23■■□□□ 1.95
SMPDL3A-201ENST00000368440 KIF21AQ7Z4S6 1674 aa27.18■■□□□ 1.94
SMPDL3A-201ENST00000368440 CFTRP13569 1480 aa27.16■■□□□ 1.94
SMPDL3A-201ENST00000368440 PDS5BQ9NTI5 1447 aa27.11■■□□□ 1.93
SMPDL3A-201ENST00000368440 PRDM2Q13029 1718 aa27.06■■□□□ 1.92
SMPDL3A-201ENST00000368440 THOC2Q8NI27 1593 aaKnown RBP27.03■■□□□ 1.92
SMPDL3A-201ENST00000368440 FANCD2Q9BXW9 1451 aa26.99■■□□□ 1.91
SMPDL3A-201ENST00000368440 CEP164Q9UPV0 1460 aa26.94■■□□□ 1.9
SMPDL3A-201ENST00000368440 CUX2O14529 1486 aa26.89■■□□□ 1.89
SMPDL3A-201ENST00000368440 MRC2Q9UBG0 1479 aa26.88■■□□□ 1.89
SMPDL3A-201ENST00000368440 WDR62O43379 1518 aa26.81■■□□□ 1.88
SMPDL3A-201ENST00000368440 URB2Q14146 1524 aaKnown RBP26.75■■□□□ 1.87
SMPDL3A-201ENST00000368440 TOPBP1Q92547 1522 aa26.59■■□□□ 1.85
SMPDL3A-201ENST00000368440 DNMBPQ6XZF7 1577 aa26.57■■□□□ 1.84
SMPDL3A-201ENST00000368440 ABCC8Q09428 1581 aa26.52■■□□□ 1.84
SMPDL3A-201ENST00000368440 CUX1P39880 1505 aa26.46■■□□□ 1.83
SMPDL3A-201ENST00000368440 POLA1P09884 1462 aaPredicted RBP26.37■■□□□ 1.81
SMPDL3A-201ENST00000368440 IFT140Q96RY7 1462 aa26.35■■□□□ 1.81
SMPDL3A-201ENST00000368440 FGD5Q6ZNL6 1462 aa26.34■■□□□ 1.81
SMPDL3A-201ENST00000368440 TARBP1Q13395 1621 aaKnown RBP26.32■■□□□ 1.8
SMPDL3A-201ENST00000368440 SYNJ1O43426 1573 aa26.3■■□□□ 1.8
SMPDL3A-201ENST00000368440 WRNQ14191 1432 aaPredicted RBP eCLIP26.28■■□□□ 1.8
SMPDL3A-201ENST00000368440 ZNF608Q9ULD9 1512 aaPredicted RBP26.28■■□□□ 1.8
SMPDL3A-201ENST00000368440 BIVM-ERCC5R4GMW8 1640 aa26.28■■□□□ 1.8
SMPDL3A-201ENST00000368440 RAD54L2Q9Y4B4 1467 aa26.27■■□□□ 1.8
SMPDL3A-201ENST00000368440 TOP2BQ02880 1626 aa26.26■■□□□ 1.79
SMPDL3A-201ENST00000368440 SOGA1O94964 1423 aa26.23■■□□□ 1.79
SMPDL3A-201ENST00000368440 EIF4G3O43432 1585 aaKnown RBP26.21■■□□□ 1.79
SMPDL3A-201ENST00000368440 WDR97A6NE52 1622 aa26.18■■□□□ 1.78
SMPDL3A-201ENST00000368440 AQRO60306 1485 aaKnown RBP eCLIP26.13■■□□□ 1.77
SMPDL3A-201ENST00000368440 TDRD9Q8NDG6 1382 aaKnown RBP26.09■■□□□ 1.77
SMPDL3A-201ENST00000368440 ABCA10Q8WWZ4 1543 aa26.06■■□□□ 1.76
SMPDL3A-201ENST00000368440 ABCA5Q8WWZ7 1642 aa26■■□□□ 1.75
SMPDL3A-201ENST00000368440 PBRM1Q86U86 1689 aa25.97■■□□□ 1.75
SMPDL3A-201ENST00000368440 GAPVD1Q14C86 1478 aa25.94■■□□□ 1.74
SMPDL3A-201ENST00000368440 GRIN2BQ13224 1484 aa25.91■■□□□ 1.74
SMPDL3A-201ENST00000368440 SNAPC4Q5SXM2 1469 aa25.9■■□□□ 1.74
SMPDL3A-201ENST00000368440 DNAJC5Q9H3Z4 198 aa25.89■■□□□ 1.73
SMPDL3A-201ENST00000368440 CHD1O14646 1710 aa25.88■■□□□ 1.73
SMPDL3A-201ENST00000368440 MAGI1Q96QZ7 1491 aaPredicted RBP25.83■■□□□ 1.73
SMPDL3A-201ENST00000368440 ERICH3Q5RHP9 1530 aa25.75■■□□□ 1.71
SMPDL3A-201ENST00000368440 FBLN2P98095 1184 aa25.74■■□□□ 1.71
SMPDL3A-201ENST00000368440 OSCARQ8IYS5 282 aa25.74■■□□□ 1.71
SMPDL3A-201ENST00000368440 ADAMTS12P58397 1594 aa25.74■■□□□ 1.71
SMPDL3A-201ENST00000368440 SYNJ2O15056 1496 aa25.73■■□□□ 1.71
SMPDL3A-201ENST00000368440 TRIM41Q8WV44 630 aa25.71■■□□□ 1.71
SMPDL3A-201ENST00000368440 KIF27Q86VH2 1401 aa25.7■■□□□ 1.7
SMPDL3A-201ENST00000368440 CHMP7Q8WUX9 453 aaPredicted RBP25.66■■□□□ 1.7
SMPDL3A-201ENST00000368440 FHAD1B1AJZ9 1412 aa25.63■■□□□ 1.69
SMPDL3A-201ENST00000368440 RUSC2Q8N2Y8 1516 aa25.61■■□□□ 1.69
SMPDL3A-201ENST00000368440 GRIN2AQ12879 1464 aa25.6■■□□□ 1.69
SMPDL3A-201ENST00000368440 IGF1RP08069 1367 aa25.59■■□□□ 1.69
SMPDL3A-201ENST00000368440 CUL7Q14999 1698 aa25.56■■□□□ 1.68
SMPDL3A-201ENST00000368440 CLASP1Q7Z460 1538 aa25.56■■□□□ 1.68
SMPDL3A-201ENST00000368440 CHIC1Q5VXU3 224 aa25.52■■□□□ 1.68
SMPDL3A-201ENST00000368440 CEP170Q5SW79 1584 aa25.52■■□□□ 1.68
SMPDL3A-201ENST00000368440 NUP160Q12769 1436 aa25.47■■□□□ 1.67
SMPDL3A-201ENST00000368440 RIMBP3CA6NJZ7 1639 aa25.45■■□□□ 1.66
SMPDL3A-201ENST00000368440 RIMBP3BA6NNM3 1639 aa25.45■■□□□ 1.66
SMPDL3A-201ENST00000368440 RIMBP3Q9UFD9 1639 aa25.45■■□□□ 1.66
SMPDL3A-201ENST00000368440 CARMIL1Q5VZK9 1371 aa25.44■■□□□ 1.66
SMPDL3A-201ENST00000368440 ARHGEF11O15085 1522 aa25.42■■□□□ 1.66
SMPDL3A-201ENST00000368440 RAPGEF2Q9Y4G8 1499 aa25.32■■□□□ 1.64
SMPDL3A-201ENST00000368440 SHROOM2Q13796 1616 aa25.31■■□□□ 1.64
SMPDL3A-201ENST00000368440 PRXQ9BXM0 1461 aa25.27■■□□□ 1.64
Retrieved 100 of 20,778 RNA–protein pairs in 299.3 ms