Protein–RNA interactions for Protein: P01375

TNF, Tumor necrosis factor, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFP01375 NRXN1-229ENST00000628515 3243 ntTSL 5 BASIC14.34□□□□□ -0.11
TNFP01375 COLEC11-203ENST00000382062 1633 ntTSL 1 (best) BASIC14.33□□□□□ -0.11
TNFP01375 CBLN4-201ENST00000064571 3024 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
TNFP01375 CDK5RAP3-201ENST00000338399 1866 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
TNFP01375 JAKMIP1-204ENST00000409831 2371 ntAPPRIS P1 TSL 2 BASIC14.33□□□□□ -0.11
TNFP01375 HIPK3-203ENST00000456517 7399 ntAPPRIS P1 TSL 2 BASIC14.33□□□□□ -0.11
TNFP01375 MAGED4B-207ENST00000485287 2618 ntTSL 1 (best) BASIC14.33□□□□□ -0.11
TNFP01375 CREB3L3-201ENST00000078445 2618 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.11
TNFP01375 NFYA-202ENST00000353205 1660 ntTSL 5 BASIC14.33□□□□□ -0.11
TNFP01375 TNF-208ENST00000449264 1676 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
TNFP01375 GSN-215ENST00000545652 2428 ntTSL 2 BASIC14.33□□□□□ -0.12
TNFP01375 SHROOM1-201ENST00000319854 3190 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.12
TNFP01375 GAK-201ENST00000314167 4442 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
TNFP01375 UBR2-201ENST00000372899 7857 ntAPPRIS P2 TSL 1 (best) BASIC14.33□□□□□ -0.12
TNFP01375 UBR2-202ENST00000372901 7857 ntAPPRIS ALT1 TSL 5 BASIC14.33□□□□□ -0.12
TNFP01375 AC018629.1-201ENST00000623381 1736 ntBASIC14.33□□□□□ -0.12
TNFP01375 AIFM1-209ENST00000535724 2468 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
TNFP01375 GMPPB-201ENST00000308375 3217 ntTSL 2 BASIC14.33□□□□□ -0.12
TNFP01375 BBS5-201ENST00000295240 3475 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
TNFP01375 APAF1-201ENST00000333991 4539 ntTSL 5 BASIC14.33□□□□□ -0.12
TNFP01375 USH1C-207ENST00000527720 2278 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
TNFP01375 PCSK2-205ENST00000536609 2275 ntTSL 2 BASIC14.33□□□□□ -0.12
TNFP01375 TNFSF13-202ENST00000349228 2036 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
TNFP01375 KHSRPP1-201ENST00000427983 1768 ntBASIC14.33□□□□□ -0.12
TNFP01375 ROBO3-201ENST00000397801 4569 ntAPPRIS P2 TSL 1 (best) BASIC14.33□□□□□ -0.12
TNFP01375 ROBO3-220ENST00000538940 4551 ntAPPRIS ALT2 TSL 5 BASIC14.33□□□□□ -0.12
TNFP01375 SPERT-204ENST00000610924 1505 ntAPPRIS ALT2 TSL 5 BASIC14.33□□□□□ -0.12
TNFP01375 CRB3-201ENST00000308243 631 ntAPPRIS ALT2 TSL 2 BASIC14.33□□□□□ -0.12
TNFP01375 NCR3-202ENST00000376071 541 ntTSL 5 BASIC14.33□□□□□ -0.12
TNFP01375 RPP25L-202ENST00000378959 888 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
TNFP01375 AC080129.2-201ENST00000418353 430 ntTSL 3 BASIC14.33□□□□□ -0.12
TNFP01375 PDIA3P2-201ENST00000428073 158 ntBASIC14.33□□□□□ -0.12
TNFP01375 AC008443.1-201ENST00000511331 1000 ntTSL 3 BASIC14.33□□□□□ -0.12
TNFP01375 AC104561.3-201ENST00000518590 715 ntTSL 5 BASIC14.33□□□□□ -0.12
TNFP01375 RTN3P1-201ENST00000536295 711 ntBASIC14.33□□□□□ -0.12
TNFP01375 AC010754.1-201ENST00000582300 1061 ntTSL 3 BASIC14.33□□□□□ -0.12
TNFP01375 GEMIN7-204ENST00000591747 576 ntAPPRIS P1 TSL 5 BASIC14.33□□□□□ -0.12
TNFP01375 AC010336.6-201ENST00000595107 528 ntTSL 4 BASIC14.33□□□□□ -0.12
TNFP01375 NEAT1-203ENST00000601801 487 ntTSL 4 BASIC14.33□□□□□ -0.12
TNFP01375 AC012044.1-201ENST00000603431 297 ntBASIC14.33□□□□□ -0.12
TNFP01375 DDX5-235ENST00000630471 473 ntTSL 4 BASIC14.33□□□□□ -0.12
TNFP01375 SRSF12-201ENST00000452027 3599 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
TNFP01375 SYNRG-217ENST00000612223 8229 ntAPPRIS P4 TSL 1 (best) BASIC14.33□□□□□ -0.12
TNFP01375 PAK1IP1-201ENST00000379568 1800 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
TNFP01375 STOML1-206ENST00000561656 1833 ntTSL 3 BASIC14.33□□□□□ -0.12
TNFP01375 SLC35G2-201ENST00000393079 1577 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
TNFP01375 DLK1-201ENST00000331224 1324 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
TNFP01375 TM4SF4-201ENST00000305354 2101 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
TNFP01375 ZIM2-AS1-201ENST00000595954 2129 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
TNFP01375 MVB12B-206ENST00000489637 2666 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
TNFP01375 MSTO1-201ENST00000245564 2431 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
TNFP01375 TOB1-AS1-201ENST00000416263 1351 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
TNFP01375 AP000552.1-203ENST00000416615 1930 ntTSL 5 BASIC14.33□□□□□ -0.12
TNFP01375 TCL1A-203ENST00000554012 1391 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
TNFP01375 LINC00334-203ENST00000638500 1377 ntTSL 5 BASIC14.33□□□□□ -0.12
TNFP01375 CUL7-203ENST00000535468 5504 ntAPPRIS ALT2 TSL 2 BASIC14.33□□□□□ -0.12
TNFP01375 SPIN3-207ENST00000638386 4461 ntAPPRIS P1 TSL 2 BASIC14.33□□□□□ -0.12
TNFP01375 MAGED2-201ENST00000218439 1958 ntAPPRIS P2 TSL 5 BASIC14.33□□□□□ -0.12
TNFP01375 PCDHB14-201ENST00000239449 4828 ntAPPRIS P1 BASIC14.32□□□□□ -0.12
TNFP01375 SLC36A1-207ENST00000520701 2005 ntAPPRIS P1 TSL 5 BASIC14.32□□□□□ -0.12
TNFP01375 UPF3B-202ENST00000345865 2335 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
TNFP01375 UBE2D3-207ENST00000394801 2368 ntAPPRIS ALT1 TSL 1 (best) BASIC14.32□□□□□ -0.12
TNFP01375 KLHL33-203ENST00000637228 5404 ntTSL 5 BASIC14.32□□□□□ -0.12
TNFP01375 AC006504.5-208ENST00000588784 2401 ntBASIC14.32□□□□□ -0.12
TNFP01375 SEC24D-202ENST00000419654 2786 ntTSL 5 BASIC14.32□□□□□ -0.12
TNFP01375 PCDHGC5-202ENST00000610789 2763 ntAPPRIS ALT2 BASIC14.32□□□□□ -0.12
TNFP01375 GCKR-201ENST00000264717 2186 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
TNFP01375 KAT5-216ENST00000534650 1875 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
TNFP01375 RASA1-201ENST00000274376 3752 ntAPPRIS P3 TSL 1 (best) BASIC14.32□□□□□ -0.12
TNFP01375 SMARCE1-205ENST00000431889 1569 ntTSL 2 BASIC14.32□□□□□ -0.12
TNFP01375 PSMB5-202ENST00000361611 1294 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
TNFP01375 APRT-201ENST00000378364 947 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
TNFP01375 TEX33-202ENST00000402860 986 ntAPPRIS P3 TSL 1 (best) BASIC14.32□□□□□ -0.12
TNFP01375 PSMB5-203ENST00000425762 900 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
TNFP01375 AP1B1P1-201ENST00000432373 827 ntTSL 3 BASIC14.32□□□□□ -0.12
TNFP01375 FKBP11-202ENST00000444214 630 ntTSL 2 BASIC14.32□□□□□ -0.12
TNFP01375 BMS1P17-203ENST00000444357 552 ntTSL 4 BASIC14.32□□□□□ -0.12
TNFP01375 AC073150.1-201ENST00000450406 1084 ntBASIC14.32□□□□□ -0.12
TNFP01375 LAMA4-209ENST00000453937 645 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
TNFP01375 MSRB3-206ENST00000535664 964 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
TNFP01375 AC016044.1-201ENST00000560818 572 ntTSL 4 BASIC14.32□□□□□ -0.12
TNFP01375 TBC1D16-203ENST00000570373 961 ntTSL 5 BASIC14.32□□□□□ -0.12
TNFP01375 NAT9-211ENST00000580632 799 ntTSL 3 BASIC14.32□□□□□ -0.12
TNFP01375 MIR3188-201ENST00000583494 85 ntBASIC14.32□□□□□ -0.12
TNFP01375 MFSD11-218ENST00000591864 446 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
TNFP01375 AC011466.3-201ENST00000596563 852 ntTSL 2 BASIC14.32□□□□□ -0.12
TNFP01375 BMS1P22-203ENST00000609679 552 ntTSL 4 BASIC14.32□□□□□ -0.12
TNFP01375 NISCH-202ENST00000420808 2589 ntAPPRIS ALT2 TSL 5 BASIC14.32□□□□□ -0.12
TNFP01375 PXYLP1-201ENST00000286353 3281 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
TNFP01375 DHCR7-202ENST00000407721 2601 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
TNFP01375 LONP1-213ENST00000590729 2626 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
TNFP01375 FRMPD2B-201ENST00000431305 1347 ntBASIC14.32□□□□□ -0.12
TNFP01375 DIRAS2-201ENST00000375765 4386 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
TNFP01375 PRMT7-203ENST00000449359 2091 ntTSL 2 BASIC14.32□□□□□ -0.12
TNFP01375 ATP2B3-202ENST00000349466 4280 ntAPPRIS P1 TSL 5 BASIC14.32□□□□□ -0.12
TNFP01375 PCCB-215ENST00000482086 1436 ntTSL 3 BASIC14.32□□□□□ -0.12
TNFP01375 C14orf79-205ENST00000549240 2503 ntAPPRIS ALT2 TSL 2 BASIC14.32□□□□□ -0.12
TNFP01375 SMARCA2-203ENST00000349721 5761 ntTSL 5 BASIC14.32□□□□□ -0.12
TNFP01375 CDKN2B-AS1-208ENST00000580576 2175 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
TNFP01375 C12orf49-201ENST00000261318 8404 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 47.5 ms