Protein–RNA interactions for Protein: O75161

NPHP4, Nephrocystin-4, humanhuman

Predicted RBP Predictions only

Length 1,426 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4O75161 FAM226B-201ENST00000602508 1490 ntBASIC20.11■□□□□ 0.81
NPHP4O75161 PTPN5-202ENST00000396166 2299 ntTSL 2 BASIC20.11■□□□□ 0.81
NPHP4O75161 GSKIP-207ENST00000556095 3834 ntAPPRIS P1 TSL 2 BASIC20.11■□□□□ 0.81
NPHP4O75161 SUPT20H-212ENST00000475892 2836 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
NPHP4O75161 ZNF707-223ENST00000532205 2865 ntAPPRIS P1 TSL 2 BASIC20.11■□□□□ 0.81
NPHP4O75161 CCT8L1P-201ENST00000465400 1674 ntBASIC20.11■□□□□ 0.81
NPHP4O75161 COA6-203ENST00000366615 710 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
NPHP4O75161 G0S2-201ENST00000367029 866 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
NPHP4O75161 DBNDD2-207ENST00000372722 1202 ntTSL 3 BASIC20.1■□□□□ 0.81
NPHP4O75161 CASP2-203ENST00000392925 616 ntTSL 3 BASIC20.1■□□□□ 0.81
NPHP4O75161 HLA-DMA-202ENST00000395303 1007 ntBASIC20.1■□□□□ 0.81
NPHP4O75161 AC147651.3-201ENST00000429872 731 ntTSL 2 BASIC20.1■□□□□ 0.81
NPHP4O75161 AL356000.1-201ENST00000441073 1238 ntBASIC20.1■□□□□ 0.81
NPHP4O75161 AC133141.1-201ENST00000443015 339 ntBASIC20.1■□□□□ 0.81
NPHP4O75161 RN7SL578P-201ENST00000477781 283 ntBASIC20.1■□□□□ 0.81
NPHP4O75161 AC112484.2-201ENST00000498297 1298 ntTSL 3 BASIC20.1■□□□□ 0.81
NPHP4O75161 VEGFA-219ENST00000518824 606 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
NPHP4O75161 AAMDC-210ENST00000532481 690 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
NPHP4O75161 SRP54-AS1-204ENST00000556705 580 ntTSL 2 BASIC20.1■□□□□ 0.81
NPHP4O75161 AC254633.1-201ENST00000606790 345 ntBASIC20.1■□□□□ 0.81
NPHP4O75161 AC020922.4-201ENST00000621389 339 ntBASIC20.1■□□□□ 0.81
NPHP4O75161 LINC01588-216ENST00000623502 975 ntTSL 2 BASIC20.1■□□□□ 0.81
NPHP4O75161 PCDHGB5-202ENST00000621169 2670 ntAPPRIS ALT2 BASIC20.1■□□□□ 0.81
NPHP4O75161 CDKN1A-203ENST00000405375 2267 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
NPHP4O75161 STOML1-206ENST00000561656 1833 ntTSL 3 BASIC20.1■□□□□ 0.81
NPHP4O75161 EDN3-205ENST00000395654 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC20.1■□□□□ 0.81
NPHP4O75161 PCDHGB8P-201ENST00000502926 1973 ntBASIC20.1■□□□□ 0.81
NPHP4O75161 TMUB2-204ENST00000538716 1953 ntAPPRIS ALT1 TSL 2 BASIC20.1■□□□□ 0.81
NPHP4O75161 AL050341.2-201ENST00000567508 1541 ntBASIC20.1■□□□□ 0.81
NPHP4O75161 ERICH1-206ENST00000522706 1551 ntAPPRIS ALT2 TSL 5 BASIC20.1■□□□□ 0.81
NPHP4O75161 CACFD1-201ENST00000291722 2688 ntTSL 2 BASIC20.1■□□□□ 0.81
NPHP4O75161 ADGRG2-210ENST00000379878 4803 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
NPHP4O75161 PRSS16-201ENST00000230582 2716 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
NPHP4O75161 GALNT13-201ENST00000392825 5536 ntAPPRIS P1 TSL 2 BASIC20.1■□□□□ 0.81
NPHP4O75161 UGT3A1-204ENST00000507113 1650 ntTSL 2 BASIC20.1■□□□□ 0.81
NPHP4O75161 SRSF5-203ENST00000553521 2815 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
NPHP4O75161 LINC00200-201ENST00000425630 2434 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
NPHP4O75161 HMGA1-203ENST00000374116 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC20.1■□□□□ 0.81
NPHP4O75161 SLC8B1-210ENST00000550047 2493 ntTSL 2 BASIC20.1■□□□□ 0.81
NPHP4O75161 PMF1-203ENST00000368279 1019 ntTSL 2 BASIC20.1■□□□□ 0.81
NPHP4O75161 IFITM1-202ENST00000408968 855 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
NPHP4O75161 AC006328.1-201ENST00000437571 379 ntBASIC20.1■□□□□ 0.81
NPHP4O75161 AL356218.1-201ENST00000450864 353 ntTSL 3 BASIC20.1■□□□□ 0.81
NPHP4O75161 TPT1P6-201ENST00000458298 514 ntBASIC20.1■□□□□ 0.81
NPHP4O75161 AC026412.1-206ENST00000502273 206 ntBASIC20.1■□□□□ 0.81
NPHP4O75161 TIMM10-202ENST00000525158 530 ntAPPRIS P1 TSL 2 BASIC20.1■□□□□ 0.81
NPHP4O75161 RNASEK-204ENST00000552039 591 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
NPHP4O75161 HIST2H4A-201ENST00000578186 583 ntAPPRIS P1 BASIC20.1■□□□□ 0.81
NPHP4O75161 RN7SL455P-201ENST00000580629 282 ntBASIC20.1■□□□□ 0.81
NPHP4O75161 GSTT2-202ENST00000621118 1112 ntTSL 5 BASIC20.1■□□□□ 0.81
NPHP4O75161 AL513478.2-202ENST00000621949 835 ntTSL 3 BASIC20.1■□□□□ 0.81
NPHP4O75161 AC048382.6-201ENST00000621980 1223 ntBASIC20.1■□□□□ 0.81
NPHP4O75161 NAF1-201ENST00000274054 1907 ntAPPRIS P3 TSL 1 (best) BASIC20.1■□□□□ 0.81
NPHP4O75161 NR1H3-235ENST00000616973 1919 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
NPHP4O75161 EEF1AKMT3-201ENST00000300209 2563 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
NPHP4O75161 METTL6-202ENST00000383790 1335 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
NPHP4O75161 PLK2-215ENST00000617412 2792 ntTSL 5 BASIC20.09■□□□□ 0.81
NPHP4O75161 USP2-202ENST00000455332 2903 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
NPHP4O75161 HSPA4L-204ENST00000508776 3020 ntAPPRIS P1 TSL 2 BASIC20.09■□□□□ 0.81
NPHP4O75161 ARHGEF28-204ENST00000437974 5792 ntAPPRIS P3 TSL 1 (best) BASIC20.09■□□□□ 0.81
NPHP4O75161 DENND1A-202ENST00000373620 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC20.09■□□□□ 0.81
NPHP4O75161 LINC02199-201ENST00000506655 2702 ntBASIC20.09■□□□□ 0.81
NPHP4O75161 SEC23A-203ENST00000545328 2734 ntTSL 2 BASIC20.09■□□□□ 0.81
NPHP4O75161 FDX1-201ENST00000260270 3206 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
NPHP4O75161 PSMD9-201ENST00000261817 2307 ntAPPRIS ALT1 TSL 2 BASIC20.09■□□□□ 0.81
NPHP4O75161 AR-209ENST00000613054 3532 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
NPHP4O75161 INPP5J-207ENST00000405300 2515 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
NPHP4O75161 FCN2-202ENST00000350339 943 ntAPPRIS ALT2 TSL 5 BASIC20.09■□□□□ 0.81
NPHP4O75161 OLFML2B-202ENST00000367938 1153 ntTSL 2 BASIC20.09■□□□□ 0.81
NPHP4O75161 SSR4-202ENST00000370085 526 ntTSL 2 BASIC20.09■□□□□ 0.81
NPHP4O75161 SFMBT2-202ENST00000379711 692 ntTSL 5 BASIC20.09■□□□□ 0.81
NPHP4O75161 UBE2I-206ENST00000403747 1217 ntAPPRIS P1 TSL 5 BASIC20.09■□□□□ 0.81
NPHP4O75161 SF3B1-204ENST00000414963 651 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
NPHP4O75161 FDPSP7-201ENST00000429043 1054 ntBASIC20.09■□□□□ 0.81
NPHP4O75161 ARSEP1-202ENST00000430152 499 ntTSL 3 BASIC20.09■□□□□ 0.81
NPHP4O75161 CIDEC-205ENST00000443115 443 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
NPHP4O75161 PEBP1P3-201ENST00000455475 548 ntBASIC20.09■□□□□ 0.81
NPHP4O75161 RN7SL173P-201ENST00000461853 292 ntBASIC20.09■□□□□ 0.81
NPHP4O75161 PGAP2-207ENST00000463452 931 ntAPPRIS P1 TSL 2 BASIC20.09■□□□□ 0.81
NPHP4O75161 SMIM15-202ENST00000507416 584 ntAPPRIS P1 TSL 2 BASIC20.09■□□□□ 0.81
NPHP4O75161 AC084262.1-201ENST00000567818 751 ntBASIC20.09■□□□□ 0.81
NPHP4O75161 MYMX-201ENST00000573382 817 ntAPPRIS P1 TSL 5 BASIC20.09■□□□□ 0.81
NPHP4O75161 DYRK1A-203ENST00000398956 1590 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
NPHP4O75161 RPARP-AS1-202ENST00000492465 1556 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
NPHP4O75161 SEC13-209ENST00000397117 1603 ntTSL 5 BASIC20.08■□□□□ 0.81
NPHP4O75161 CHRNA2-201ENST00000240132 1735 ntAPPRIS ALT2 TSL 2 BASIC20.08■□□□□ 0.81
NPHP4O75161 UBE2N-201ENST00000318066 5186 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
NPHP4O75161 OXA1L-202ENST00000358043 1750 ntTSL 2 BASIC20.08■□□□□ 0.81
NPHP4O75161 CYP20A1-203ENST00000429815 1812 ntTSL 2 BASIC20.08■□□□□ 0.81
NPHP4O75161 POLR1E-202ENST00000377798 1868 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
NPHP4O75161 DAG1-221ENST00000541308 5676 ntAPPRIS P1 TSL 5 BASIC20.08■□□□□ 0.81
NPHP4O75161 WFIKKN2-202ENST00000426127 2193 ntTSL 2 BASIC20.08■□□□□ 0.81
NPHP4O75161 CCDC144A-202ENST00000340621 2214 ntTSL 2 BASIC20.08■□□□□ 0.81
NPHP4O75161 DHODH-201ENST00000219240 2426 ntAPPRIS P2 TSL 1 (best) BASIC20.08■□□□□ 0.81
NPHP4O75161 HIBCH-202ENST00000392332 2463 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
NPHP4O75161 ACTN4-201ENST00000252699 4963 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
NPHP4O75161 C18orf15-201ENST00000623680 2534 ntBASIC20.08■□□□□ 0.81
NPHP4O75161 SSPN-201ENST00000242729 2788 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
NPHP4O75161 PTPN5-201ENST00000358540 3135 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
NPHP4O75161 ELOVL7-205ENST00000508821 3994 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 74.5 ms