Protein–RNA interactions for Protein: O00151

PDLIM1, PDZ and LIM domain protein 1, humanhuman

Predictions only

Length 329 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM1O00151 TEX28P1-201ENST00000613479 1221 ntBASIC14.17□□□□□ -0.14
PDLIM1O00151 TEX28P2-201ENST00000617764 1221 ntBASIC14.17□□□□□ -0.14
PDLIM1O00151 RAVER1-206ENST00000611074 3586 ntAPPRIS P2 TSL 5 BASIC14.17□□□□□ -0.14
PDLIM1O00151 UGP2-207ENST00000467648 2057 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
PDLIM1O00151 UBE3A-209ENST00000625778 3217 ntTSL 5 BASIC14.17□□□□□ -0.14
PDLIM1O00151 CAMK2B-217ENST00000457475 4142 ntTSL 5 BASIC14.17□□□□□ -0.14
PDLIM1O00151 NWD2-201ENST00000309447 8325 ntAPPRIS P1 TSL 5 BASIC14.17□□□□□ -0.14
PDLIM1O00151 GPT2-201ENST00000340124 3984 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
PDLIM1O00151 USH1C-201ENST00000005226 2700 ntAPPRIS P3 TSL 5 BASIC14.17□□□□□ -0.14
PDLIM1O00151 KIF3C-201ENST00000264712 5344 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
PDLIM1O00151 AHCY-205ENST00000538132 2366 ntTSL 2 BASIC14.17□□□□□ -0.14
PDLIM1O00151 POMT1-201ENST00000341012 2912 ntTSL 2 BASIC14.17□□□□□ -0.14
PDLIM1O00151 SUPV3L1-201ENST00000359655 2484 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
PDLIM1O00151 HIC2-202ENST00000407598 4734 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
PDLIM1O00151 TM4SF19-203ENST00000446879 1582 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
PDLIM1O00151 ITGAM-202ENST00000544665 4718 ntAPPRIS ALT1 TSL 1 (best) BASIC14.17□□□□□ -0.14
PDLIM1O00151 KRT8P24-201ENST00000560290 1559 ntBASIC14.17□□□□□ -0.14
PDLIM1O00151 ACTG1-206ENST00000573283 2002 ntAPPRIS P1 TSL 5 BASIC14.17□□□□□ -0.14
PDLIM1O00151 GDF9-201ENST00000296875 1796 ntTSL 5 BASIC14.17□□□□□ -0.14
PDLIM1O00151 RSPO1-202ENST00000401068 2320 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
PDLIM1O00151 ASAP3-202ENST00000437606 2865 ntAPPRIS ALT2 TSL 2 BASIC14.16□□□□□ -0.14
PDLIM1O00151 HMGA1-204ENST00000401473 1887 ntAPPRIS ALT1 TSL 1 (best) BASIC14.16□□□□□ -0.14
PDLIM1O00151 ZFP90-209ENST00000570495 4636 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
PDLIM1O00151 PIK3CG-201ENST00000359195 5377 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
PDLIM1O00151 RAPGEF1-202ENST00000372190 6045 ntAPPRIS P4 TSL 1 (best) BASIC14.16□□□□□ -0.14
PDLIM1O00151 FAM98B-202ENST00000397609 4388 ntAPPRIS P2 TSL 5 BASIC14.16□□□□□ -0.14
PDLIM1O00151 SP6-202ENST00000536300 3848 ntAPPRIS P1 TSL 2 BASIC14.16□□□□□ -0.14
PDLIM1O00151 MAP7-205ENST00000544465 2744 ntAPPRIS ALT2 TSL 2 BASIC14.16□□□□□ -0.14
PDLIM1O00151 TIGD6-201ENST00000296736 4006 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
PDLIM1O00151 ACADM-201ENST00000370834 2172 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
PDLIM1O00151 ZNF79-202ENST00000543471 2194 ntTSL 2 BASIC14.16□□□□□ -0.14
PDLIM1O00151 ZNF79-203ENST00000612342 2192 ntTSL 2 BASIC14.16□□□□□ -0.14
PDLIM1O00151 CHRNA7-201ENST00000306901 6181 ntAPPRIS P3 TSL 1 (best) BASIC14.16□□□□□ -0.14
PDLIM1O00151 NKIRAS1-203ENST00000415901 1644 ntAPPRIS ALT1 TSL 5 BASIC14.16□□□□□ -0.14
PDLIM1O00151 DEK-202ENST00000397239 3427 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
PDLIM1O00151 SEZ6L-206ENST00000404234 3444 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
PDLIM1O00151 STX16-NPEPL1-202ENST00000530122 3433 ntAPPRIS P1 TSL 5 BASIC14.16□□□□□ -0.14
PDLIM1O00151 ACRBP-201ENST00000229243 1933 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
PDLIM1O00151 MYLIP-201ENST00000349606 2796 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
PDLIM1O00151 GRIPAP1-215ENST00000622599 2881 ntTSL 5 BASIC14.16□□□□□ -0.14
PDLIM1O00151 USE1-201ENST00000263897 843 ntAPPRIS P2 TSL 1 (best) BASIC14.16□□□□□ -0.14
PDLIM1O00151 NBL1-201ENST00000289749 731 ntAPPRIS ALT2 TSL 2 BASIC14.16□□□□□ -0.14
PDLIM1O00151 HDAC8-202ENST00000373556 704 ntTSL 2 BASIC14.16□□□□□ -0.14
PDLIM1O00151 RBM3-202ENST00000376755 1130 ntAPPRIS P1 TSL 2 BASIC14.16□□□□□ -0.14
PDLIM1O00151 C11orf21-201ENST00000381153 2956 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
PDLIM1O00151 AC104457.1-201ENST00000401024 814 ntBASIC14.16□□□□□ -0.14
PDLIM1O00151 CENPM-205ENST00000404067 905 ntTSL 3 BASIC14.16□□□□□ -0.14
PDLIM1O00151 C2orf76-202ENST00000409466 1150 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
PDLIM1O00151 AL157935.1-209ENST00000415141 1105 ntTSL 2 BASIC14.16□□□□□ -0.14
PDLIM1O00151 C1orf210-201ENST00000423420 629 ntAPPRIS P1 TSL 3 BASIC14.16□□□□□ -0.14
PDLIM1O00151 TSSK5P-201ENST00000423978 907 ntBASIC14.16□□□□□ -0.14
PDLIM1O00151 AL022068.1-202ENST00000432171 794 ntTSL 3 BASIC14.16□□□□□ -0.14
PDLIM1O00151 ZMYND10-AS1-201ENST00000440013 250 ntTSL 3 BASIC14.16□□□□□ -0.14
PDLIM1O00151 TARDBPP1-201ENST00000442013 1203 ntBASIC14.16□□□□□ -0.14
PDLIM1O00151 TMEM176B-205ENST00000450753 1006 ntTSL 2 BASIC14.16□□□□□ -0.14
PDLIM1O00151 OBP2A-206ENST00000539850 914 ntAPPRIS P1 TSL 5 BASIC14.16□□□□□ -0.14
PDLIM1O00151 CARHSP1-203ENST00000561530 729 ntAPPRIS P1 TSL 3 BASIC14.16□□□□□ -0.14
PDLIM1O00151 AL590560.3-201ENST00000623350 461 ntBASIC14.16□□□□□ -0.14
PDLIM1O00151 CLN3-246ENST00000636228 1224 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
PDLIM1O00151 AL133387.2-201ENST00000422661 2222 ntTSL 2 BASIC14.16□□□□□ -0.14
PDLIM1O00151 KRT8P12-202ENST00000472924 1397 ntBASIC14.16□□□□□ -0.14
PDLIM1O00151 SCARB2-227ENST00000640957 3255 ntAPPRIS ALT1 TSL 5 BASIC14.16□□□□□ -0.14
PDLIM1O00151 AC011298.1-201ENST00000407635 3398 ntTSL 2 BASIC14.16□□□□□ -0.14
PDLIM1O00151 HACD3-206ENST00000565299 1465 ntTSL 5 BASIC14.16□□□□□ -0.14
PDLIM1O00151 COPS7B-201ENST00000350033 2544 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
PDLIM1O00151 AC007388.1-204ENST00000449569 2517 ntTSL 2 BASIC14.16□□□□□ -0.14
PDLIM1O00151 IL17RD-201ENST00000296318 8720 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
PDLIM1O00151 HPX-201ENST00000265983 1652 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
PDLIM1O00151 NT5C3A-213ENST00000610140 1670 ntAPPRIS ALT1 TSL 1 (best) BASIC14.16□□□□□ -0.14
PDLIM1O00151 PRSS54-204ENST00000567164 1799 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
PDLIM1O00151 ZNF541-203ENST00000391901 4580 ntAPPRIS P2 TSL 5 BASIC14.16□□□□□ -0.14
PDLIM1O00151 JUN-201ENST00000371222 3540 ntAPPRIS P1 BASIC14.16□□□□□ -0.14
PDLIM1O00151 NUP54-201ENST00000264883 2367 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
PDLIM1O00151 AC021752.1-202ENST00000613161 2398 ntTSL 2 BASIC14.16□□□□□ -0.14
PDLIM1O00151 CRELD1-202ENST00000383811 2696 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
PDLIM1O00151 CPT1C-204ENST00000405931 2785 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
PDLIM1O00151 KCNMA1-285ENST00000640605 3864 ntAPPRIS ALT2 TSL 5 BASIC14.16□□□□□ -0.14
PDLIM1O00151 PARP1-203ENST00000366794 3958 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
PDLIM1O00151 ATP6AP2-233ENST00000638153 1303 ntAPPRIS ALT2 TSL 5 BASIC14.15□□□□□ -0.14
PDLIM1O00151 ACOT7-210ENST00000608083 1403 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
PDLIM1O00151 AC100757.3-201ENST00000622361 1406 ntBASIC14.15□□□□□ -0.14
PDLIM1O00151 CRH-201ENST00000276571 1543 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
PDLIM1O00151 DNMT3L-201ENST00000270172 1706 ntAPPRIS P3 TSL 1 (best) BASIC14.15□□□□□ -0.14
PDLIM1O00151 BEND5-201ENST00000371833 1716 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
PDLIM1O00151 RBPMS2-202ENST00000560606 1746 ntTSL 2 BASIC14.15□□□□□ -0.14
PDLIM1O00151 ST3GAL5-203ENST00000393805 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
PDLIM1O00151 TRPV1-209ENST00000576351 2525 ntTSL 5 BASIC14.15□□□□□ -0.14
PDLIM1O00151 CNGA3-204ENST00000409937 2615 ntAPPRIS ALT2 TSL 2 BASIC14.15□□□□□ -0.14
PDLIM1O00151 KIF17-203ENST00000400463 3731 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
PDLIM1O00151 STARD8-201ENST00000252336 4862 ntAPPRIS P3 TSL 1 (best) BASIC14.15□□□□□ -0.14
PDLIM1O00151 ADAM33-207ENST00000619289 3195 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
PDLIM1O00151 IL1RAPL2-202ENST00000372582 2985 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
PDLIM1O00151 MAN2B2-202ENST00000504248 2968 ntTSL 2 BASIC14.15□□□□□ -0.14
PDLIM1O00151 ATG13-215ENST00000529655 2566 ntAPPRIS P1 TSL 2 BASIC14.15□□□□□ -0.14
PDLIM1O00151 ZDHHC6-202ENST00000369405 2170 ntAPPRIS P3 TSL 1 (best) BASIC14.15□□□□□ -0.14
PDLIM1O00151 PIGT-203ENST00000372689 1971 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
PDLIM1O00151 RAB42-201ENST00000373826 1950 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
PDLIM1O00151 SIX1-203ENST00000554986 1959 ntTSL 3 BASIC14.15□□□□□ -0.14
PDLIM1O00151 SCLT1-209ENST00000511426 1696 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
PDLIM1O00151 CTSD-211ENST00000637387 1597 ntAPPRIS ALT2 TSL 5 BASIC14.15□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 37 ms