RNA–Protein interactions for RNA: ENST00000640957.1

SCARB2-227, Transcript of scavenger receptor class B member 2, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCARB2, Length 3,255 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCARB2-227ENST00000640957 NISCHQ9Y2I1 1504 aa25.92■■□□□ 1.74
SCARB2-227ENST00000640957 SHROOM4Q9ULL8 1493 aa23.47■■□□□ 1.35
SCARB2-227ENST00000640957 SUPT5HO00267 1087 aaKnown RBP23.41■■□□□ 1.34
SCARB2-227ENST00000640957 PPARGC1BQ86YN6 1023 aaKnown RBP23.35■■□□□ 1.33
SCARB2-227ENST00000640957 DCAF8L2P0C7V8 631 aa23.32■■□□□ 1.32
SCARB2-227ENST00000640957 HRCP23327 699 aa23.23■■□□□ 1.31
SCARB2-227ENST00000640957 PCGF6Q9BYE7 350 aa23.21■■□□□ 1.31
SCARB2-227ENST00000640957 MYO15BQ96JP2 1530 aa22.67■■□□□ 1.22
SCARB2-227ENST00000640957 CHIC1Q5VXU3 224 aa22.55■■□□□ 1.2
SCARB2-227ENST00000640957 LOC105371045A0A1W2PR82 267 aa22.48■■□□□ 1.19
SCARB2-227ENST00000640957 SCAF1Q9H7N4 1312 aaKnown RBP22.22■■□□□ 1.15
SCARB2-227ENST00000640957 EHMT2Q96KQ7 1210 aa22.17■■□□□ 1.14
SCARB2-227ENST00000640957 PELP1Q8IZL8 1130 aaKnown RBP22.05■■□□□ 1.12
SCARB2-227ENST00000640957 TRIM26Q12899 539 aaPredicted RBP21.97■■□□□ 1.11
SCARB2-227ENST00000640957 FAM9AQ8IZU1 332 aaPredicted RBP21.84■■□□□ 1.09
SCARB2-227ENST00000640957 ZCCHC6Q5VYS8 1495 aaKnown RBP21.76■■□□□ 1.07
SCARB2-227ENST00000640957 DCAF1Q9Y4B6 1507 aa21.66■■□□□ 1.06
SCARB2-227ENST00000640957 NEUROD1Q13562 356 aa21.66■■□□□ 1.06
SCARB2-227ENST00000640957 GTF3C3Q9Y5Q9 886 aa21.58■■□□□ 1.05
SCARB2-227ENST00000640957 ZEB1P37275 1124 aaPredicted RBP21.54■■□□□ 1.04
SCARB2-227ENST00000640957 TTBK1Q5TCY1 1321 aaPredicted RBP21.54■■□□□ 1.04
SCARB2-227ENST00000640957 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP21.53■■□□□ 1.04
SCARB2-227ENST00000640957 ACIN1Q9UKV3 1341 aaKnown RBP21.5■■□□□ 1.03
SCARB2-227ENST00000640957 CCDC180Q9P1Z9 1646 aa21.44■■□□□ 1.02
SCARB2-227ENST00000640957 YTHDC1Q96MU7 727 aaKnown RBP21.41■■□□□ 1.02
SCARB2-227ENST00000640957 CCER1Q8TC90 406 aaPredicted RBP21.35■■□□□ 1.01
SCARB2-227ENST00000640957 TRIM41Q8WV44 630 aa21.31■■□□□ 1
SCARB2-227ENST00000640957 DIEXFQ68CQ4 756 aaKnown RBP21.25■□□□□ 0.99
SCARB2-227ENST00000640957 ABCC9O60706 1549 aa21.24■□□□□ 0.99
SCARB2-227ENST00000640957 CENPBP07199 599 aaPredicted RBP21.18■□□□□ 0.98
SCARB2-227ENST00000640957 SCRIBQ14160 1630 aa21.06■□□□□ 0.96
SCARB2-227ENST00000640957 MYT1Q01538 1121 aa21■□□□□ 0.95
SCARB2-227ENST00000640957 MIER1Q8N108 512 aa20.8■□□□□ 0.92
SCARB2-227ENST00000640957 RSF1Q96T23 1441 aaPredicted RBP20.74■□□□□ 0.91
SCARB2-227ENST00000640957 PABPN1Q86U42 306 aaKnown RBP eCLIP20.73■□□□□ 0.91
SCARB2-227ENST00000640957 ZNF316A6NFI3 1004 aaPredicted RBP20.68■□□□□ 0.9
SCARB2-227ENST00000640957 CECR2Q9BXF3 1484 aa20.64■□□□□ 0.89
SCARB2-227ENST00000640957 HNRNPUL2Q1KMD3 747 aaKnown RBP20.61■□□□□ 0.89
SCARB2-227ENST00000640957 RANGAP1P46060 587 aaPredicted RBP20.61■□□□□ 0.89
SCARB2-227ENST00000640957 RB1CC1Q8TDY2 1594 aa20.51■□□□□ 0.87
SCARB2-227ENST00000640957 BCANQ96GW7 911 aa20.45■□□□□ 0.86
SCARB2-227ENST00000640957 UBTFP17480 764 aaKnown RBP20.44■□□□□ 0.86
SCARB2-227ENST00000640957 MROH2BQ7Z745 1585 aa20.38■□□□□ 0.85
SCARB2-227ENST00000640957 BCL11AQ9H165 835 aa20.37■□□□□ 0.85
SCARB2-227ENST00000640957 SUPT16HQ9Y5B9 1047 aaKnown RBP20.35■□□□□ 0.85
SCARB2-227ENST00000640957 TSHZ2Q9NRE2 1034 aa20.28■□□□□ 0.84
SCARB2-227ENST00000640957 CSRNP3Q8WYN3 585 aa20.27■□□□□ 0.84
SCARB2-227ENST00000640957 ANP32EQ9BTT0 268 aa20.22■□□□□ 0.83
SCARB2-227ENST00000640957 WIZO95785 1651 aa20.22■□□□□ 0.83
SCARB2-227ENST00000640957 KCNH8Q96L42 1107 aa20.19■□□□□ 0.82
SCARB2-227ENST00000640957 NACADO15069 1562 aa20.17■□□□□ 0.82
SCARB2-227ENST00000640957 CEP162Q5TB80 1403 aa20.11■□□□□ 0.81
SCARB2-227ENST00000640957 ITGAEP38570 1179 aa20.07■□□□□ 0.8
SCARB2-227ENST00000640957 ABCC8Q09428 1581 aa20.04■□□□□ 0.8
SCARB2-227ENST00000640957 APLP2Q06481 763 aa20.03■□□□□ 0.8
SCARB2-227ENST00000640957 SOGA1O94964 1423 aa20.02■□□□□ 0.79
SCARB2-227ENST00000640957 FKBP8Q14318 412 aa20.01■□□□□ 0.79
SCARB2-227ENST00000640957 CCDC88BA6NC98 1476 aa19.97■□□□□ 0.79
SCARB2-227ENST00000640957 RUSC2Q8N2Y8 1516 aa19.93■□□□□ 0.78
SCARB2-227ENST00000640957 BAZ1AQ9NRL2 1556 aaPredicted RBP19.88■□□□□ 0.77
SCARB2-227ENST00000640957 HIRIP3Q9BW71 556 aaPredicted RBP19.87■□□□□ 0.77
SCARB2-227ENST00000640957 TRIM52Q96A61 297 aa19.85■□□□□ 0.77
SCARB2-227ENST00000640957 RBM19Q9Y4C8 960 aaKnown RBP19.83■□□□□ 0.77
SCARB2-227ENST00000640957 WRNQ14191 1432 aaPredicted RBP eCLIP19.82■□□□□ 0.76
SCARB2-227ENST00000640957 IRX6P78412 446 aaPredicted RBP19.78■□□□□ 0.76
SCARB2-227ENST00000640957 TNIKQ9UKE5 1360 aa19.78■□□□□ 0.76
SCARB2-227ENST00000640957 DDX10Q13206 875 aaKnown RBP19.77■□□□□ 0.76
SCARB2-227ENST00000640957 ATP1B4Q9UN42 357 aaPredicted RBP19.72■□□□□ 0.75
SCARB2-227ENST00000640957 MSH5O43196 834 aa19.7■□□□□ 0.74
SCARB2-227ENST00000640957 NEFLP07196 543 aa19.68■□□□□ 0.74
SCARB2-227ENST00000640957 SMARCA4P51532 1647 aa19.67■□□□□ 0.74
SCARB2-227ENST00000640957 TOP2AP11388 1531 aaKnown RBP19.63■□□□□ 0.73
SCARB2-227ENST00000640957 ERICH6Q7L0X2 663 aa19.63■□□□□ 0.73
SCARB2-227ENST00000640957 CLSPNQ9HAW4 1339 aa19.6■□□□□ 0.73
SCARB2-227ENST00000640957 DHX57Q6P158 1386 aaKnown RBP19.6■□□□□ 0.73
SCARB2-227ENST00000640957 KANK4Q5T7N3 995 aaPredicted RBP19.59■□□□□ 0.73
SCARB2-227ENST00000640957 SMARCA2P51531 1590 aa19.59■□□□□ 0.73
SCARB2-227ENST00000640957 CLIP1P30622 1438 aa19.58■□□□□ 0.73
SCARB2-227ENST00000640957 SIN3AQ96ST3 1273 aa19.54■□□□□ 0.72
SCARB2-227ENST00000640957 GOLGA3Q08378 1498 aa19.52■□□□□ 0.71
SCARB2-227ENST00000640957 BAZ1BQ9UIG0 1483 aaKnown RBP19.51■□□□□ 0.71
SCARB2-227ENST00000640957 P3H3Q8IVL6 736 aa19.51■□□□□ 0.71
SCARB2-227ENST00000640957 NBR1Q14596 966 aa19.47■□□□□ 0.71
SCARB2-227ENST00000640957 PRKCSHP14314 528 aaPredicted RBP19.45■□□□□ 0.7
SCARB2-227ENST00000640957 UNC13AQ9UPW8 1703 aa19.43■□□□□ 0.7
SCARB2-227ENST00000640957 EEA1Q15075 1411 aa19.41■□□□□ 0.7
SCARB2-227ENST00000640957 SENP3-EIF4A1A0A087X0R7 540 aa19.39■□□□□ 0.69
SCARB2-227ENST00000640957 CNGB1Q14028 1251 aaPredicted RBP19.39■□□□□ 0.69
SCARB2-227ENST00000640957 ATAD2BQ9ULI0 1458 aa19.39■□□□□ 0.69
SCARB2-227ENST00000640957 VPS8Q8N3P4 1428 aa19.39■□□□□ 0.69
SCARB2-227ENST00000640957 BICRAQ9NZM4 1560 aa19.37■□□□□ 0.69
SCARB2-227ENST00000640957 RAPGEF2Q9Y4G8 1499 aa19.35■□□□□ 0.69
SCARB2-227ENST00000640957 CEP164Q9UPV0 1460 aa19.35■□□□□ 0.69
SCARB2-227ENST00000640957 DEKP35659 375 aaKnown RBP19.35■□□□□ 0.69
SCARB2-227ENST00000640957 HNRNPUQ00839 825 aaKnown RBP eCLIP19.35■□□□□ 0.69
SCARB2-227ENST00000640957 CDK11AQ9UQ88 783 aaPredicted RBP19.35■□□□□ 0.69
SCARB2-227ENST00000640957 EIF4G1Q04637 1599 aaKnown RBP19.34■□□□□ 0.69
SCARB2-227ENST00000640957 ANP32CO43423 234 aa19.33■□□□□ 0.68
SCARB2-227ENST00000640957 ANO8Q9HCE9 1232 aaPredicted RBP19.33■□□□□ 0.68
SCARB2-227ENST00000640957 FAM50AQ14320 339 aaKnown RBP19.3■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms