Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 SNAI3-AS1-206ENST00000569786 588 ntTSL 3 BASIC14.09□□□□□ -0.15
SDC1P18827 MIR4745-201ENST00000577608 62 ntBASIC14.09□□□□□ -0.15
SDC1P18827 BX088702.1-201ENST00000610784 235 ntBASIC14.09□□□□□ -0.15
SDC1P18827 NDUFB1-207ENST00000617122 417 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
SDC1P18827 REM1-201ENST00000201979 1665 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
SDC1P18827 NT5C3A-213ENST00000610140 1670 ntAPPRIS ALT1 TSL 1 (best) BASIC14.09□□□□□ -0.15
SDC1P18827 HSPA8P5-201ENST00000456928 2069 ntBASIC14.09□□□□□ -0.15
SDC1P18827 TPD52L2-206ENST00000358548 2275 ntTSL 2 BASIC14.09□□□□□ -0.15
SDC1P18827 PRKD1-209ENST00000616995 3498 ntAPPRIS ALT2 TSL 5 BASIC14.09□□□□□ -0.15
SDC1P18827 MAP3K4-201ENST00000348824 5295 ntAPPRIS ALT2 TSL 5 BASIC14.09□□□□□ -0.15
SDC1P18827 TTC28-AS1-207ENST00000428584 5859 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
SDC1P18827 SLC38A9-202ENST00000396865 2927 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
SDC1P18827 MTA1-202ENST00000405646 2709 ntAPPRIS ALT2 TSL 5 BASIC14.09□□□□□ -0.15
SDC1P18827 CBX3-201ENST00000337620 2128 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
SDC1P18827 DNAAF5-202ENST00000403952 1907 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
SDC1P18827 AC008125.1-201ENST00000548488 1538 ntTSL 5 BASIC14.09□□□□□ -0.15
SDC1P18827 WDR45-224ENST00000485908 1301 ntTSL 5 BASIC14.09□□□□□ -0.15
SDC1P18827 LRRFIP1-204ENST00000392000 3365 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
SDC1P18827 TPO-205ENST00000382201 2956 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
SDC1P18827 TRIM46-210ENST00000545012 2979 ntTSL 2 BASIC14.09□□□□□ -0.15
SDC1P18827 CTXND1-201ENST00000560778 6890 ntAPPRIS P1 TSL 3 BASIC14.09□□□□□ -0.15
SDC1P18827 ST20-AS1-201ENST00000560255 4223 ntBASIC14.09□□□□□ -0.15
SDC1P18827 SMG9-211ENST00000601170 2387 ntTSL 2 BASIC14.09□□□□□ -0.15
SDC1P18827 PDE8B-203ENST00000340978 3426 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
SDC1P18827 SLC16A1-207ENST00000538576 4374 ntAPPRIS P1 TSL 2 BASIC14.08□□□□□ -0.15
SDC1P18827 WDR59-201ENST00000262144 5898 ntAPPRIS P1 TSL 5 BASIC14.08□□□□□ -0.15
SDC1P18827 C1QTNF9-201ENST00000332018 1830 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.15
SDC1P18827 INTS11-248ENST00000545578 2263 ntTSL 2 BASIC14.08□□□□□ -0.15
SDC1P18827 AC020915.4-201ENST00000597230 2708 ntTSL 2 BASIC14.08□□□□□ -0.15
SDC1P18827 AC009093.2-202ENST00000620513 2079 ntBASIC14.08□□□□□ -0.15
SDC1P18827 C12orf49-201ENST00000261318 8404 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.15
SDC1P18827 UBA6-AS1-201ENST00000498917 1445 ntTSL 1 (best) BASIC14.08□□□□□ -0.15
SDC1P18827 LINC00299-202ENST00000442956 2342 ntTSL 2 BASIC14.08□□□□□ -0.16
SDC1P18827 FLII-201ENST00000327031 4338 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
SDC1P18827 SPOCK3-226ENST00000541354 2797 ntTSL 2 BASIC14.08□□□□□ -0.16
SDC1P18827 GAP43-201ENST00000305124 1691 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
SDC1P18827 ZNF789-201ENST00000331410 1654 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
SDC1P18827 ZKSCAN7-201ENST00000273320 3477 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
SDC1P18827 AC026992.2-202ENST00000565312 1934 ntTSL 5 BASIC14.08□□□□□ -0.16
SDC1P18827 MYO3A-201ENST00000265944 5581 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
SDC1P18827 PPM1F-201ENST00000263212 5143 ntAPPRIS P2 TSL 1 (best) BASIC14.08□□□□□ -0.16
SDC1P18827 UHRF1BP1L-201ENST00000279907 5168 ntAPPRIS P4 TSL 1 (best) BASIC14.08□□□□□ -0.16
SDC1P18827 HPD-204ENST00000543163 1709 ntTSL 5 BASIC14.08□□□□□ -0.16
SDC1P18827 FIS1-201ENST00000223136 734 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
SDC1P18827 MGST3-203ENST00000367885 680 ntTSL 2 BASIC14.08□□□□□ -0.16
SDC1P18827 ATG2A-201ENST00000377264 6357 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
SDC1P18827 PNKD-204ENST00000436005 978 ntTSL 5 BASIC14.08□□□□□ -0.16
SDC1P18827 AC106760.1-201ENST00000508690 800 ntBASIC14.08□□□□□ -0.16
SDC1P18827 CLRN2-201ENST00000511148 823 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
SDC1P18827 TDH-203ENST00000531764 1110 ntBASIC14.08□□□□□ -0.16
SDC1P18827 LINC02298-201ENST00000546968 965 ntTSL 5 BASIC14.08□□□□□ -0.16
SDC1P18827 AIPL1-204ENST00000570466 1196 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
SDC1P18827 TUBB6-213ENST00000591909 1017 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
SDC1P18827 AC010319.3-201ENST00000597028 470 ntBASIC14.08□□□□□ -0.16
SDC1P18827 ITSN1-212ENST00000399367 5722 ntAPPRIS ALT1 TSL 1 (best) BASIC14.08□□□□□ -0.16
SDC1P18827 NCKIPSD-204ENST00000416649 2925 ntAPPRIS ALT2 TSL 1 (best) BASIC14.08□□□□□ -0.16
SDC1P18827 PPP2R1B-203ENST00000393055 1525 ntTSL 2 BASIC14.08□□□□□ -0.16
SDC1P18827 AC006974.1-201ENST00000637928 1501 ntTSL 5 BASIC14.08□□□□□ -0.16
SDC1P18827 ZBTB17-202ENST00000375743 2745 ntAPPRIS P3 TSL 1 (best) BASIC14.08□□□□□ -0.16
SDC1P18827 GOLGA2-212ENST00000609374 2973 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
SDC1P18827 AC112229.3-201ENST00000603767 3202 ntAPPRIS P1 TSL 2 BASIC14.08□□□□□ -0.16
SDC1P18827 AC013271.1-201ENST00000640669 3202 ntAPPRIS P1 TSL 2 BASIC14.08□□□□□ -0.16
SDC1P18827 HDAC11-213ENST00000437379 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC14.08□□□□□ -0.16
SDC1P18827 CDIP1-205ENST00000563332 2774 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
SDC1P18827 SNPH-202ENST00000381873 4995 ntAPPRIS P3 TSL 1 (best) BASIC14.08□□□□□ -0.16
SDC1P18827 IRF9-202ENST00000396864 1838 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
SDC1P18827 NEK10-206ENST00000429845 4250 ntAPPRIS P1 TSL 5 BASIC14.08□□□□□ -0.16
SDC1P18827 UBE2I-201ENST00000325437 2832 ntAPPRIS P1 TSL 3 BASIC14.08□□□□□ -0.16
SDC1P18827 MAPKAP1-204ENST00000373498 3131 ntAPPRIS P1 TSL 5 BASIC14.08□□□□□ -0.16
SDC1P18827 FBLN7-203ENST00000409450 1394 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
SDC1P18827 TAMM41-205ENST00000444133 1619 ntTSL 2 BASIC14.08□□□□□ -0.16
SDC1P18827 CDH16-209ENST00000570262 2604 ntTSL 5 BASIC14.08□□□□□ -0.16
SDC1P18827 VPS36-207ENST00000611132 4607 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
SDC1P18827 TMEM132E-203ENST00000631683 4379 ntAPPRIS P2 TSL 5 BASIC14.08□□□□□ -0.16
SDC1P18827 CEP170B-204ENST00000556508 6683 ntTSL 5 BASIC14.08□□□□□ -0.16
SDC1P18827 NFE2L2-202ENST00000397063 2651 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
SDC1P18827 C9orf139-202ENST00000623196 4990 ntTSL 2 BASIC14.08□□□□□ -0.16
SDC1P18827 MBLAC2-202ENST00000514906 1936 ntBASIC14.07□□□□□ -0.16
SDC1P18827 DDN-201ENST00000421952 3749 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
SDC1P18827 C2-205ENST00000418949 1658 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
SDC1P18827 SC5D-201ENST00000264027 2456 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
SDC1P18827 PSEN2-201ENST00000366782 2465 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
SDC1P18827 OBSL1-202ENST00000373873 3297 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
SDC1P18827 UBE2G2-202ENST00000345496 3566 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
SDC1P18827 PTPN9-201ENST00000306726 3862 ntAPPRIS ALT2 TSL 5 BASIC14.07□□□□□ -0.16
SDC1P18827 GTF3C4-201ENST00000372146 9043 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
SDC1P18827 NACC2-201ENST00000277554 6899 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
SDC1P18827 MGAT1-202ENST00000333055 8863 ntAPPRIS P1 TSL 2 BASIC14.07□□□□□ -0.16
SDC1P18827 ARMCX6-207ENST00000538627 1758 ntAPPRIS P1 TSL 2 BASIC14.07□□□□□ -0.16
SDC1P18827 LINC02396-202ENST00000550636 2324 ntTSL 2 BASIC14.07□□□□□ -0.16
SDC1P18827 SEZ6-203ENST00000360295 4306 ntAPPRIS ALT2 TSL 5 BASIC14.07□□□□□ -0.16
SDC1P18827 PAF1-204ENST00000595564 1810 ntAPPRIS ALT2 TSL 2 BASIC14.07□□□□□ -0.16
SDC1P18827 LINC00266-1-201ENST00000279067 928 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
SDC1P18827 FGFR1-201ENST00000326324 3816 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
SDC1P18827 KRTAP10-1-201ENST00000400375 1215 ntAPPRIS P1 BASIC14.07□□□□□ -0.16
SDC1P18827 RN7SKP175-201ENST00000408472 289 ntBASIC14.07□□□□□ -0.16
SDC1P18827 NGDN-202ENST00000408901 1143 ntAPPRIS ALT2 TSL 1 (best) BASIC14.07□□□□□ -0.16
SDC1P18827 PRSS42-202ENST00000447340 1280 ntTSL 2 BASIC14.07□□□□□ -0.16
SDC1P18827 RAD51D-205ENST00000460118 1064 ntTSL 5 BASIC14.07□□□□□ -0.16
SDC1P18827 TERF1P3-201ENST00000505638 1227 ntBASIC14.07□□□□□ -0.16
Retrieved 100 of 98,524 protein–RNA pairs in 70.3 ms