Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 MAP3K8-201ENST00000263056 3096 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
MSH6P52701 BTC-201ENST00000395743 2816 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
MSH6P52701 CHST11-205ENST00000549260 5696 ntAPPRIS ALT1 TSL 1 (best) BASIC20.05■□□□□ 0.8
MSH6P52701 ENC1-207ENST00000618628 5657 ntAPPRIS P1 TSL 5 BASIC20.05■□□□□ 0.8
MSH6P52701 TRPV4-204ENST00000536838 2514 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
MSH6P52701 PPP2R5D-206ENST00000472118 2963 ntAPPRIS ALT2 TSL 5 BASIC20.05■□□□□ 0.8
MSH6P52701 PAUPAR-201ENST00000630360 2965 ntBASIC20.05■□□□□ 0.8
MSH6P52701 C3orf58-201ENST00000315691 4346 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
MSH6P52701 TSKU-205ENST00000612930 2666 ntAPPRIS P1 TSL 4 BASIC20.05■□□□□ 0.8
MSH6P52701 VEGFA-201ENST00000230480 993 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
MSH6P52701 GEMIN8P4-201ENST00000380526 729 ntBASIC20.05■□□□□ 0.8
MSH6P52701 AC092570.1-201ENST00000414446 469 ntBASIC20.05■□□□□ 0.8
MSH6P52701 KRT18P4-201ENST00000422599 1288 ntBASIC20.05■□□□□ 0.8
MSH6P52701 SMAD9-IT1-201ENST00000437983 504 ntTSL 3 BASIC20.05■□□□□ 0.8
MSH6P52701 CITED1-209ENST00000453707 998 ntAPPRIS ALT2 TSL 3 BASIC20.05■□□□□ 0.8
MSH6P52701 AC090152.1-203ENST00000517898 1106 ntTSL 2 BASIC20.05■□□□□ 0.8
MSH6P52701 IGHEP2-201ENST00000519308 1256 ntBASIC20.05■□□□□ 0.8
MSH6P52701 VENTXP3-201ENST00000546480 773 ntBASIC20.05■□□□□ 0.8
MSH6P52701 NR4A1-209ENST00000548232 1101 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
MSH6P52701 GAS7-216ENST00000583882 553 ntTSL 5 BASIC20.05■□□□□ 0.8
MSH6P52701 AP005264.1-201ENST00000586226 733 ntTSL 3 BASIC20.05■□□□□ 0.8
MSH6P52701 SPATA20-202ENST00000356488 2634 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
MSH6P52701 RTN1-209ENST00000611068 2647 ntTSL 5 BASIC20.05■□□□□ 0.8
MSH6P52701 CR382285.1-201ENST00000625012 1485 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
MSH6P52701 TRIM7-201ENST00000274773 2840 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
MSH6P52701 COL26A1-201ENST00000313669 3033 ntAPPRIS P2 TSL 1 (best) BASIC20.05■□□□□ 0.8
MSH6P52701 RGS12-203ENST00000344733 5469 ntAPPRIS P4 TSL 1 (best) BASIC20.05■□□□□ 0.8
MSH6P52701 SVOPL-203ENST00000421622 1653 ntTSL 5 BASIC20.05■□□□□ 0.8
MSH6P52701 PRSS50-201ENST00000460241 2960 ntAPPRIS P1 TSL 2 BASIC20.05■□□□□ 0.8
MSH6P52701 MRGPRX4-201ENST00000314254 1444 ntAPPRIS P1 BASIC20.04■□□□□ 0.8
MSH6P52701 PIAS4-201ENST00000262971 3159 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
MSH6P52701 ARHGEF28-214ENST00000545377 6351 ntAPPRIS P3 TSL 5 BASIC20.04■□□□□ 0.8
MSH6P52701 PHB-201ENST00000300408 1832 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
MSH6P52701 LINC00391-201ENST00000433569 1844 ntTSL 5 BASIC20.04■□□□□ 0.8
MSH6P52701 HLA-DQB2-231ENST00000435145 2026 ntBASIC20.04■□□□□ 0.8
MSH6P52701 CDK19-202ENST00000368911 6246 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
MSH6P52701 UBOX5-AS1-201ENST00000446537 1792 ntTSL 2 BASIC20.04■□□□□ 0.8
MSH6P52701 KAT7-210ENST00000509773 1774 ntTSL 2 BASIC20.04■□□□□ 0.8
MSH6P52701 TBXAS1-208ENST00000448866 1963 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
MSH6P52701 EPN2-201ENST00000314728 4871 ntAPPRIS P4 TSL 1 (best) BASIC20.04■□□□□ 0.8
MSH6P52701 SMPD4-202ENST00000409031 4896 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
MSH6P52701 ARID1A-201ENST00000324856 8577 ntAPPRIS P3 TSL 1 (best) BASIC20.04■□□□□ 0.8
MSH6P52701 F10-201ENST00000375551 1509 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
MSH6P52701 WARS-232ENST00000556645 2508 ntTSL 5 BASIC20.04■□□□□ 0.8
MSH6P52701 NIPA2-204ENST00000398014 3130 ntAPPRIS P1 TSL 5 BASIC20.04■□□□□ 0.8
MSH6P52701 GK-204ENST00000378945 2063 ntAPPRIS P3 TSL 1 (best) BASIC20.04■□□□□ 0.8
MSH6P52701 SARS2-202ENST00000430193 1886 ntAPPRIS ALT2 TSL 5 BASIC20.04■□□□□ 0.8
MSH6P52701 PSMG2-201ENST00000317615 1686 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
MSH6P52701 DAD1-201ENST00000250498 731 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
MSH6P52701 MRPL33-201ENST00000296102 518 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
MSH6P52701 PIFO-201ENST00000369737 746 ntTSL 2 BASIC20.04■□□□□ 0.8
MSH6P52701 LST1-204ENST00000376086 554 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
MSH6P52701 MRPL33-202ENST00000379666 404 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
MSH6P52701 ID2-AS1-201ENST00000412712 953 ntTSL 5 BASIC20.04■□□□□ 0.8
MSH6P52701 NSD2-209ENST00000436793 835 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
MSH6P52701 AC128689.1-202ENST00000459861 827 ntTSL 3 BASIC20.04■□□□□ 0.8
MSH6P52701 EIF5A2-205ENST00000487522 565 ntTSL 3 BASIC20.04■□□□□ 0.8
MSH6P52701 RORA-AS1-201ENST00000501579 761 ntTSL 5 BASIC20.04■□□□□ 0.8
MSH6P52701 AC132803.1-201ENST00000504204 493 ntTSL 2 BASIC20.04■□□□□ 0.8
MSH6P52701 AC108474.1-201ENST00000507776 421 ntTSL 3 BASIC20.04■□□□□ 0.8
MSH6P52701 F11R-204ENST00000537746 1245 ntTSL 2 BASIC20.04■□□□□ 0.8
MSH6P52701 NAA40-205ENST00000539656 577 ntTSL 4 BASIC20.04■□□□□ 0.8
MSH6P52701 PMEL-214ENST00000550447 901 ntTSL 3 BASIC20.04■□□□□ 0.8
MSH6P52701 AC139099.2-201ENST00000572343 641 ntTSL 3 BASIC20.04■□□□□ 0.8
MSH6P52701 MED11-202ENST00000573708 802 ntTSL 2 BASIC20.04■□□□□ 0.8
MSH6P52701 Metazoa_SRP.157-201ENST00000622819 262 ntBASIC20.04■□□□□ 0.8
MSH6P52701 SAP130-203ENST00000357702 4173 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
MSH6P52701 PRAL-201ENST00000624952 3286 ntBASIC20.04■□□□□ 0.8
MSH6P52701 RCC1-201ENST00000373831 1577 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
MSH6P52701 SERPINA1-209ENST00000449399 1559 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
MSH6P52701 TCL1A-203ENST00000554012 1391 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
MSH6P52701 MAP4K3-202ENST00000341681 4271 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
MSH6P52701 ZDHHC6-201ENST00000369404 1721 ntAPPRIS ALT1 TSL 1 (best) BASIC20.03■□□□□ 0.8
MSH6P52701 PAF1-201ENST00000221265 2066 ntAPPRIS P3 TSL 1 (best) BASIC20.03■□□□□ 0.8
MSH6P52701 TMEM9-202ENST00000367332 1544 ntAPPRIS ALT1 TSL 2 BASIC20.03■□□□□ 0.8
MSH6P52701 TLE2-203ENST00000443826 2238 ntTSL 2 BASIC20.03■□□□□ 0.8
MSH6P52701 SPIN3-224ENST00000639583 2245 ntTSL 5 BASIC20.03■□□□□ 0.8
MSH6P52701 CCT6A-201ENST00000275603 2719 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
MSH6P52701 ENPP1-201ENST00000360971 7442 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
MSH6P52701 PFN2-212ENST00000490975 858 ntTSL 4 BASIC20.03■□□□□ 0.8
MSH6P52701 AC092612.1-201ENST00000514501 998 ntBASIC20.03■□□□□ 0.8
MSH6P52701 ADM-203ENST00000525063 867 ntAPPRIS P1 TSL 3 BASIC20.03■□□□□ 0.8
MSH6P52701 AC023389.1-201ENST00000577846 576 ntTSL 4 BASIC20.03■□□□□ 0.8
MSH6P52701 AC017033.1-201ENST00000603720 708 ntTSL 2 BASIC20.03■□□□□ 0.8
MSH6P52701 LINC01002-234ENST00000633808 848 ntTSL 5 BASIC20.03■□□□□ 0.8
MSH6P52701 MBP-204ENST00000382582 2281 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
MSH6P52701 CT55-201ENST00000276241 1445 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
MSH6P52701 ATP5A1-201ENST00000282050 1945 ntAPPRIS P1 TSL 5 BASIC20.03■□□□□ 0.8
MSH6P52701 AC090616.6-203ENST00000579186 1945 ntBASIC20.03■□□□□ 0.8
MSH6P52701 C3orf52-202ENST00000431717 2054 ntAPPRIS ALT2 TSL 2 BASIC20.03■□□□□ 0.8
MSH6P52701 REPIN1-202ENST00000425389 2876 ntAPPRIS P3 BASIC20.03■□□□□ 0.8
MSH6P52701 ADI1-201ENST00000327435 2391 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
MSH6P52701 MAPK8IP1-202ENST00000395629 3180 ntTSL 5 BASIC20.03■□□□□ 0.8
MSH6P52701 FAM86B1-216ENST00000533852 2043 ntAPPRIS ALT2 TSL 5 BASIC20.03■□□□□ 0.8
MSH6P52701 PPHLN1-223ENST00000610488 1521 ntTSL 5 BASIC20.03■□□□□ 0.8
MSH6P52701 RSPO1-202ENST00000401068 2320 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
MSH6P52701 PTPN5-201ENST00000358540 3135 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
MSH6P52701 HNRNPUL2-BSCL2-201ENST00000403734 4001 ntAPPRIS P1 TSL 2 BASIC20.02■□□□□ 0.8
MSH6P52701 AC007491.1-201ENST00000637560 1306 ntTSL 5 BASIC20.02■□□□□ 0.8
MSH6P52701 MRM2-201ENST00000242257 1601 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 46.7 ms