Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 TMCO5B-204ENST00000529696 1568 ntTSL 2 BASIC14.13□□□□□ -0.15
SDC1P18827 KCNT1-209ENST00000490355 3708 ntAPPRIS ALT2 TSL 5 BASIC14.13□□□□□ -0.15
SDC1P18827 LHFPL4-201ENST00000287585 4880 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
SDC1P18827 BCAR1-205ENST00000420641 2725 ntAPPRIS ALT2 TSL 2 BASIC14.13□□□□□ -0.15
SDC1P18827 SGK2-204ENST00000373100 2225 ntAPPRIS P1 TSL 5 BASIC14.13□□□□□ -0.15
SDC1P18827 HLA-DPA1-242ENST00000419277 1704 ntAPPRIS P2 BASIC14.12□□□□□ -0.15
SDC1P18827 NICN1-201ENST00000273598 2616 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
SDC1P18827 MLXIPL-201ENST00000313375 3278 ntAPPRIS P3 TSL 1 (best) BASIC14.12□□□□□ -0.15
SDC1P18827 MLXIPL-206ENST00000434326 3252 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
SDC1P18827 NAALADL1-202ENST00000355721 2100 ntTSL 5 BASIC14.12□□□□□ -0.15
SDC1P18827 UBR5-207ENST00000520539 10297 ntAPPRIS P3 TSL 1 (best) BASIC14.12□□□□□ -0.15
SDC1P18827 CDK5RAP3-201ENST00000338399 1866 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
SDC1P18827 FAM118B-210ENST00000627851 1862 ntTSL 5 BASIC14.12□□□□□ -0.15
SDC1P18827 RAB2A-201ENST00000262646 3848 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
SDC1P18827 MED4-201ENST00000258648 2022 ntAPPRIS P3 TSL 1 (best) BASIC14.12□□□□□ -0.15
SDC1P18827 TBCEL-205ENST00000529397 1375 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
SDC1P18827 CNNM2-203ENST00000433628 3857 ntAPPRIS ALT1 TSL 2 BASIC14.12□□□□□ -0.15
SDC1P18827 FBRS-201ENST00000287468 2811 ntAPPRIS P1 TSL 5 BASIC14.12□□□□□ -0.15
SDC1P18827 CORO7-222ENST00000574025 2826 ntTSL 2 BASIC14.12□□□□□ -0.15
SDC1P18827 ALDH3A1-201ENST00000225740 1779 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
SDC1P18827 SLCO4C1-201ENST00000310954 5334 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
SDC1P18827 VWCE-202ENST00000335613 3640 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
SDC1P18827 NID1-201ENST00000264187 5864 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
SDC1P18827 GLB1L2-205ENST00000535456 3365 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
SDC1P18827 HNRNPUL1-205ENST00000593587 2725 ntTSL 2 BASIC14.12□□□□□ -0.15
SDC1P18827 ADAMTS14-202ENST00000373208 5269 ntAPPRIS P4 TSL 2 BASIC14.12□□□□□ -0.15
SDC1P18827 AL357054.3-201ENST00000607084 2055 ntTSL 5 BASIC14.12□□□□□ -0.15
SDC1P18827 LDHAL6B-201ENST00000307144 1693 ntAPPRIS P1 BASIC14.12□□□□□ -0.15
SDC1P18827 CD79A-201ENST00000221972 1258 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
SDC1P18827 KRTAP19-3-201ENST00000334063 522 ntAPPRIS P1 BASIC14.12□□□□□ -0.15
SDC1P18827 ATP5D-202ENST00000395633 704 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
SDC1P18827 BLVRA-202ENST00000402924 1161 ntAPPRIS P1 TSL 2 BASIC14.12□□□□□ -0.15
SDC1P18827 BAATP1-201ENST00000412284 1225 ntBASIC14.12□□□□□ -0.15
SDC1P18827 LINC02158-201ENST00000432377 897 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
SDC1P18827 Z82198.1-201ENST00000447396 437 ntTSL 3 BASIC14.12□□□□□ -0.15
SDC1P18827 TMEM191A-209ENST00000452055 788 ntTSL 2 BASIC14.12□□□□□ -0.15
SDC1P18827 DERL3-208ENST00000476077 969 ntAPPRIS ALT2 TSL 1 (best) BASIC14.12□□□□□ -0.15
SDC1P18827 LINC01336-201ENST00000503568 534 ntTSL 4 BASIC14.12□□□□□ -0.15
SDC1P18827 AC106772.1-201ENST00000506629 591 ntTSL 3 BASIC14.12□□□□□ -0.15
SDC1P18827 AP006333.2-201ENST00000544948 732 ntTSL 3 BASIC14.12□□□□□ -0.15
SDC1P18827 AC103988.2-201ENST00000561804 725 ntBASIC14.12□□□□□ -0.15
SDC1P18827 GABARAPL2-202ENST00000563744 791 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
SDC1P18827 TP53TG3HP-202ENST00000569755 579 ntBASIC14.12□□□□□ -0.15
SDC1P18827 ENPP7P14-201ENST00000621765 1040 ntBASIC14.12□□□□□ -0.15
SDC1P18827 ABCG1-203ENST00000361802 3034 ntAPPRIS P3 TSL 1 (best) BASIC14.12□□□□□ -0.15
SDC1P18827 AC067750.1-201ENST00000608826 6545 ntBASIC14.12□□□□□ -0.15
SDC1P18827 FMO5-201ENST00000254090 2632 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
SDC1P18827 FAM8A1-201ENST00000259963 4677 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
SDC1P18827 PEX5-207ENST00000455147 2689 ntAPPRIS P1 TSL 2 BASIC14.12□□□□□ -0.15
SDC1P18827 ANKMY1-204ENST00000391987 3221 ntTSL 5 BASIC14.12□□□□□ -0.15
SDC1P18827 PPP1CB-203ENST00000395366 4893 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
SDC1P18827 CNPY1-203ENST00000636372 2259 ntAPPRIS ALT2 TSL 5 BASIC14.12□□□□□ -0.15
SDC1P18827 UBE3B-202ENST00000342494 5722 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
SDC1P18827 AC139712.1-201ENST00000378256 1875 ntBASIC14.12□□□□□ -0.15
SDC1P18827 AC134312.5-201ENST00000568031 1313 ntBASIC14.12□□□□□ -0.15
SDC1P18827 MAGEA2-203ENST00000611557 2024 ntAPPRIS P1 TSL 5 BASIC14.12□□□□□ -0.15
SDC1P18827 PDE4A-209ENST00000592685 2707 ntAPPRIS ALT2 TSL 1 (best) BASIC14.12□□□□□ -0.15
SDC1P18827 HGNC:18790-211ENST00000621129 1483 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
SDC1P18827 RNF166-210ENST00000568683 1768 ntTSL 3 BASIC14.11□□□□□ -0.15
SDC1P18827 MTA3-203ENST00000406652 5484 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
SDC1P18827 AP002990.1-202ENST00000496634 5064 ntAPPRIS P1 TSL 2 BASIC14.11□□□□□ -0.15
SDC1P18827 RIMS3-202ENST00000372684 7235 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
SDC1P18827 TATDN3-202ENST00000366974 2389 ntAPPRIS P3 TSL 1 (best) BASIC14.11□□□□□ -0.15
SDC1P18827 LOXL3-202ENST00000393937 2398 ntTSL 5 BASIC14.11□□□□□ -0.15
SDC1P18827 NMBR-201ENST00000258042 1354 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
SDC1P18827 ELN-203ENST00000320492 2991 ntAPPRIS ALT2 TSL 2 BASIC14.11□□□□□ -0.15
SDC1P18827 SAR1A-204ENST00000373241 2996 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
SDC1P18827 AL138709.1-201ENST00000614840 1693 ntBASIC14.11□□□□□ -0.15
SDC1P18827 CSRP1-202ENST00000367306 2129 ntAPPRIS P1 TSL 5 BASIC14.11□□□□□ -0.15
SDC1P18827 NFATC4-206ENST00000539237 5686 ntAPPRIS ALT2 TSL 1 (best) BASIC14.11□□□□□ -0.15
SDC1P18827 TSPAN12-201ENST00000222747 2798 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
SDC1P18827 NPY-201ENST00000242152 585 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
SDC1P18827 PALD1-201ENST00000263563 4555 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
SDC1P18827 GAL-201ENST00000265643 818 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
SDC1P18827 DNMT3L-201ENST00000270172 1706 ntAPPRIS P3 TSL 1 (best) BASIC14.11□□□□□ -0.15
SDC1P18827 ZNRD1-201ENST00000332435 864 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
SDC1P18827 FAM169B-201ENST00000332908 579 ntAPPRIS P1 TSL 5 BASIC14.11□□□□□ -0.15
SDC1P18827 ITGB2-203ENST00000355153 2913 ntAPPRIS P1 TSL 2 BASIC14.11□□□□□ -0.15
SDC1P18827 SPOCK3-202ENST00000357545 2936 ntAPPRIS P3 TSL 1 (best) BASIC14.11□□□□□ -0.15
SDC1P18827 GABARAPL2-201ENST00000037243 1002 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
SDC1P18827 TCEAL3-202ENST00000372627 1113 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
SDC1P18827 KIF7-201ENST00000394412 4551 ntAPPRIS P1 TSL 5 BASIC14.11□□□□□ -0.15
SDC1P18827 SELENOS-201ENST00000398226 1439 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
SDC1P18827 DGCR5-201ENST00000399539 862 ntBASIC14.11□□□□□ -0.15
SDC1P18827 CYB5R3-203ENST00000402438 1050 ntTSL 5 BASIC14.11□□□□□ -0.15
SDC1P18827 FBXO15-201ENST00000419743 1708 ntAPPRIS P2 TSL 2 BASIC14.11□□□□□ -0.15
SDC1P18827 AC073283.1-201ENST00000421759 860 ntTSL 3 BASIC14.11□□□□□ -0.15
SDC1P18827 TGFA-205ENST00000444975 985 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
SDC1P18827 IL17RD-203ENST00000463523 2348 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
SDC1P18827 AL391280.1-201ENST00000506969 1062 ntBASIC14.11□□□□□ -0.15
SDC1P18827 SERF1A-205ENST00000507348 663 ntTSL 2 BASIC14.11□□□□□ -0.15
SDC1P18827 FOS-202ENST00000535987 1402 ntTSL 2 BASIC14.11□□□□□ -0.15
SDC1P18827 AC013451.1-201ENST00000554552 518 ntTSL 4 BASIC14.11□□□□□ -0.15
SDC1P18827 NDRG4-217ENST00000562999 2931 ntTSL 5 BASIC14.11□□□□□ -0.15
SDC1P18827 AC012645.3-203ENST00000567153 520 ntTSL 2 BASIC14.11□□□□□ -0.15
SDC1P18827 MIR5189-201ENST00000577370 114 ntBASIC14.11□□□□□ -0.15
SDC1P18827 ANAPC11-215ENST00000578550 599 ntAPPRIS P1 TSL 2 BASIC14.11□□□□□ -0.15
SDC1P18827 AC004637.1-201ENST00000586675 482 ntTSL 3 BASIC14.11□□□□□ -0.15
SDC1P18827 AC008750.3-201ENST00000601148 437 ntTSL 5 BASIC14.11□□□□□ -0.15
SDC1P18827 YTHDF3-AS1-201ENST00000603538 718 ntBASIC14.11□□□□□ -0.15
Retrieved 100 of 98,524 protein–RNA pairs in 65.4 ms