Protein–RNA interactions for Protein: P16989

YBX3, Y-box-binding protein 3, humanhuman

Known RBP eCLIP

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3P16989 SEPT2-231ENST00000469175 486 ntTSL 329.94■■■□□ 2.383e-8■□□□□ 9.1
YBX3P16989 SEPT2-213ENST00000428282 1005 ntTSL 323.95■■□□□ 1.423e-8■□□□□ 9.1
YBX3P16989 SEPT2-242ENST00000492978 775 ntTSL 323.95■■□□□ 1.423e-8■□□□□ 9.1
YBX3P16989 SEPT2-218ENST00000437066 574 ntTSL 423.44■■□□□ 1.343e-8■□□□□ 9.1
YBX3P16989 SEPT2-224ENST00000457335 570 ntTSL 416.5■□□□□ 0.233e-8■□□□□ 9.1
YBX3P16989 SEPT2-212ENST00000425899 738 ntTSL 515.87■□□□□ 0.133e-8■□□□□ 9.1
YBX3P16989 SEPT2-235ENST00000475823 371 ntTSL 315.77■□□□□ 0.123e-8■□□□□ 9.1
YBX3P16989 SEPT2-230ENST00000467971 571 ntTSL 215.65■□□□□ 0.13e-8■□□□□ 9.1
YBX3P16989 SEPT2-219ENST00000441533 372 ntTSL 513.91□□□□□ -0.183e-8■□□□□ 9.1
YBX3P16989 SEPT2-202ENST00000366210 672 ntTSL 312.4□□□□□ -0.423e-8■□□□□ 9.1
YBX3P16989 SEPT2-207ENST00000407017 650 ntTSL 411.14□□□□□ -0.633e-8■□□□□ 9.1
YBX3P16989 SEPT2-221ENST00000445030 575 ntTSL 311.14□□□□□ -0.633e-8■□□□□ 9.1
YBX3P16989 SEPT2-241ENST00000484740 563 ntTSL 38.02□□□□□ -1.133e-8■□□□□ 9.1
YBX3P16989 SEPT2-220ENST00000443492 558 ntTSL 57.59□□□□□ -1.193e-8■□□□□ 9.1
YBX3P16989 SEPT2-222ENST00000449239 599 ntTSL 27.07□□□□□ -1.283e-8■□□□□ 9.1
YBX3P16989 SEPT2-228ENST00000464128 565 ntTSL 46.73□□□□□ -1.333e-8■□□□□ 9.1
YBX3P16989 SEPT2-233ENST00000473479 659 ntTSL 26.28□□□□□ -1.43e-8■□□□□ 9.1
YBX3P16989 SEPT2-232ENST00000469434 583 ntTSL 35.96□□□□□ -1.463e-8■□□□□ 9.1
YBX3P16989 CTNNA1-236ENST00000522792 2044 ntTSL 217.94■□□□□ 0.465e-8■□□□□ 9.1
YBX3P16989 HSPA4-203ENST00000514825 690 ntTSL 27.4□□□□□ -1.221e-8■□□□□ 9.1
YBX3P16989 BRI3-201ENST00000297290 780 ntAPPRIS P1 TSL 1 (best) BASIC30.45■■■□□ 2.471e-9■□□□□ 9.1
YBX3P16989 BRI3-207ENST00000539286 699 ntTSL 2 BASIC27.31■■□□□ 1.961e-9■□□□□ 9.1
YBX3P16989 BRI3-202ENST00000456357 667 ntTSL 223.52■■□□□ 1.361e-9■□□□□ 9.1
YBX3P16989 BRI3-203ENST00000473967 819 ntTSL 519.41■□□□□ 0.71e-9■□□□□ 9.1
YBX3P16989 BRI3-206ENST00000491463 567 ntTSL 414.29□□□□□ -0.121e-9■□□□□ 9.1
YBX3P16989 MKRN1-214ENST00000495305 1390 ntTSL 237.32■■■■□ 3.572e-6■□□□□ 9.1
YBX3P16989 MKRN1-202ENST00000443720 1601 ntAPPRIS ALT2 TSL 1 (best) BASIC31.16■■■□□ 2.582e-6■□□□□ 9.1
YBX3P16989 MKRN1-215ENST00000496169 1625 ntTSL 230.52■■■□□ 2.482e-6■□□□□ 9.1
YBX3P16989 MKRN1-209ENST00000475010 3467 ntTSL 214.28□□□□□ -0.122e-6■□□□□ 9.1
YBX3P16989 MKRN1-201ENST00000255977 3151 ntAPPRIS P3 TSL 1 (best) BASIC14.1□□□□□ -0.152e-6■□□□□ 9.1
YBX3P16989 UBE2H-201ENST00000355621 5151 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.895e-8■□□□□ 9.1
YBX3P16989 CSNK1G2-208ENST00000591002 617 ntTSL 326.63■■□□□ 1.856e-8■□□□□ 9.1
YBX3P16989 CSNK1G2-205ENST00000589385 896 ntTSL 525.07■■□□□ 1.66e-8■□□□□ 9.1
YBX3P16989 CSNK1G2-203ENST00000585959 704 ntTSL 221.12■□□□□ 0.976e-8■□□□□ 9.1
YBX3P16989 PPP4R3A-211ENST00000557018 534 ntTSL 523.35■■□□□ 1.339e-9■□□□□ 9.1
YBX3P16989 PIP4K2A-206ENST00000545335 1436 ntTSL 2 BASIC22.24■■□□□ 1.159e-9■□□□□ 9.1
YBX3P16989 PPP4R3A-207ENST00000555029 571 ntTSL 519.54■□□□□ 0.729e-9■□□□□ 9.1
YBX3P16989 PIP4K2A-202ENST00000376573 3802 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.689e-9■□□□□ 9.1
YBX3P16989 PPP4R3A-205ENST00000554684 4108 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.399e-9■□□□□ 9.1
YBX3P16989 PPP4R3A-208ENST00000555462 3236 ntTSL 1 (best) BASIC17.26■□□□□ 0.359e-9■□□□□ 9.1
YBX3P16989 PPP4R3A-202ENST00000554390 2953 ntTSL 1 (best)17.06■□□□□ 0.329e-9■□□□□ 9.1
YBX3P16989 PPP4R3A-201ENST00000554308 2515 ntTSL 516.09■□□□□ 0.179e-9■□□□□ 9.1
YBX3P16989 PIP4K2A-201ENST00000323883 1319 ntTSL 2 BASIC15.74■□□□□ 0.119e-9■□□□□ 9.1
YBX3P16989 PPP4R3A-206ENST00000554943 3369 ntTSL 5 BASIC13.04□□□□□ -0.329e-9■□□□□ 9.1
YBX3P16989 UQCRC2-204ENST00000563711 2008 ntTSL 28.77□□□□□ -1.019e-9■□□□□ 9.1
YBX3P16989 PPP4R3A-204ENST00000554574 1944 ntTSL 25.62□□□□□ -1.519e-9■□□□□ 9.1
YBX3P16989 CERS2-206ENST00000421609 738 ntTSL 334.54■■■■□ 3.121e-9■□□□□ 9.1
YBX3P16989 CERS2-210ENST00000558062 896 ntTSL 221.7■■□□□ 1.061e-9■□□□□ 9.1
YBX3P16989 COX7A2L-201ENST00000234301 1112 ntAPPRIS P1 TSL 1 (best) BASIC26.05■■□□□ 1.762e-7■□□□□ 9.1
YBX3P16989 COX7A2L-205ENST00000464443 895 ntTSL 324.62■■□□□ 1.532e-7■□□□□ 9.1
YBX3P16989 COX7A2L-202ENST00000378669 3056 ntAPPRIS P1 TSL 2 BASIC13.25□□□□□ -0.292e-7■□□□□ 9.1
YBX3P16989 COX7A2L-208ENST00000607768 614 ntTSL 312.83□□□□□ -0.362e-7■□□□□ 9.1
YBX3P16989 COX7A2L-206ENST00000468711 516 ntTSL 311.98□□□□□ -0.492e-7■□□□□ 9.1
YBX3P16989 COX7A2L-204ENST00000463055 540 ntTSL 1 (best) BASIC10.03□□□□□ -0.82e-7■□□□□ 9.1
YBX3P16989 COPS3-206ENST00000471414 455 ntTSL 25.62□□□□□ -1.515e-8■□□□□ 9.1
YBX3P16989 TTC3-223ENST00000492275 769 ntTSL 333.17■■■□□ 2.94e-14■□□□□ 9.1
YBX3P16989 TTC3-212ENST00000463216 842 ntTSL 532.81■■■□□ 2.844e-14■□□□□ 9.1
YBX3P16989 TTC3-224ENST00000494243 861 ntTSL 532.7■■■□□ 2.834e-14■□□□□ 9.1
YBX3P16989 TTC3-217ENST00000481605 1540 ntTSL 531.65■■■□□ 2.664e-14■□□□□ 9.1
YBX3P16989 TTC3-225ENST00000540756 2025 ntTSL 2 BASIC28.36■■■□□ 2.134e-14■□□□□ 9.1
YBX3P16989 TTC3-210ENST00000450533 2451 ntTSL 1 (best)22.65■■□□□ 1.224e-14■□□□□ 9.1
YBX3P16989 TRAP1-213ENST00000575707 785 ntTSL 522.41■■□□□ 1.184e-12■□□□□ 9.1
YBX3P16989 FOXK1-202ENST00000460979 758 ntTSL 224.36■■□□□ 1.494e-9■□□□□ 9.1
YBX3P16989 PROS1-201ENST00000348974 806 ntTSL 523.08■■□□□ 1.294e-7■□□□□ 9.1
YBX3P16989 PROS1-205ENST00000488658 643 ntTSL 47.13□□□□□ -1.274e-7■□□□□ 9.1
YBX3P16989 PROS1-204ENST00000472684 562 ntTSL 56.49□□□□□ -1.374e-7■□□□□ 9.1
YBX3P16989 TMUB1-207ENST00000492838 550 ntTSL 514.16□□□□□ -0.144e-9■□□□□ 9.1
YBX3P16989 GUK1-225ENST00000481341 333 ntTSL 319.21■□□□□ 0.677e-15■□□□□ 9.1
YBX3P16989 SEPT2-210ENST00000420786 539 ntTSL 526.17■■□□□ 1.784e-8■□□□□ 9.1
YBX3P16989 SEPT2-214ENST00000428524 644 ntTSL 513.17□□□□□ -0.34e-8■□□□□ 9.1
YBX3P16989 NBAS-209ENST00000485694 1798 ntTSL 219.9■□□□□ 0.783e-10■□□□□ 9.1
YBX3P16989 VDAC1-207ENST00000492324 635 ntTSL 219.36■□□□□ 0.693e-10■□□□□ 9.1
YBX3P16989 NBAS-206ENST00000433283 687 ntTSL 218.41■□□□□ 0.543e-10■□□□□ 9.1
YBX3P16989 VDAC1-206ENST00000489906 694 ntTSL 217.69■□□□□ 0.423e-10■□□□□ 9.1
YBX3P16989 CDCA7-203ENST00000410019 1488 ntTSL 2 BASIC16.9■□□□□ 0.31e-6■□□□□ 9.1
YBX3P16989 CTNNA1-237ENST00000523275 536 ntTSL 515.97■□□□□ 0.153e-10■□□□□ 9.1
YBX3P16989 CDCA7-202ENST00000347703 2500 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.111e-6■□□□□ 9.1
YBX3P16989 CTNNA1-211ENST00000518910 572 ntTSL 415.64■□□□□ 0.093e-10■□□□□ 9.1
YBX3P16989 CDCA7-204ENST00000410101 1369 ntTSL 2 BASIC13.9□□□□□ -0.181e-6■□□□□ 9.1
YBX3P16989 CDCA7-208ENST00000496441 2943 ntTSL 212.04□□□□□ -0.481e-6■□□□□ 9.1
YBX3P16989 CDCA7-201ENST00000306721 2789 ntTSL 2 BASIC11.66□□□□□ -0.541e-6■□□□□ 9.1
YBX3P16989 CDCA7-206ENST00000467411 3176 ntTSL 1 (best)11.54□□□□□ -0.561e-6■□□□□ 9.1
YBX3P16989 CTNNA1-209ENST00000518585 568 ntTSL 46.47□□□□□ -1.373e-10■□□□□ 9.1
YBX3P16989 CTNNA1-212ENST00000518919 498 ntTSL 1 (best)5.77□□□□□ -1.493e-10■□□□□ 9.1
YBX3P16989 SYMPK-212ENST00000598896 1899 ntTSL 1 (best)27.49■■□□□ 1.994e-8■□□□□ 9.1
YBX3P16989 KHSRP-205ENST00000595223 956 ntTSL 523.71■■□□□ 1.396e-9■□□□□ 9.1
YBX3P16989 KHSRP-203ENST00000594745 379 ntTSL 319.85■□□□□ 0.776e-9■□□□□ 9.1
YBX3P16989 MRI1-204ENST00000589290 602 ntTSL 225.45■■□□□ 1.666e-7■□□□□ 9.1
YBX3P16989 MRI1-206ENST00000593245 786 ntTSL 324.23■■□□□ 1.476e-7■□□□□ 9.1
YBX3P16989 MRI1-205ENST00000591688 897 ntTSL 223.82■■□□□ 1.46e-7■□□□□ 9.1
YBX3P16989 MRI1-203ENST00000588526 862 ntTSL 221.88■■□□□ 1.096e-7■□□□□ 9.1
YBX3P16989 MRI1-201ENST00000040663 1735 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.886e-7■□□□□ 9.1
YBX3P16989 MRI1-202ENST00000319545 3027 ntTSL 1 (best) BASIC15.93■□□□□ 0.146e-7■□□□□ 9.1
YBX3P16989 TBC1D23-205ENST00000475134 2074 ntTSL 5 BASIC7.59□□□□□ -1.193e-7■□□□□ 9.1
YBX3P16989 FAM53C-211ENST00000513056 923 ntTSL 1 (best) BASIC25.48■■□□□ 1.677e-7■□□□□ 9.1
YBX3P16989 FAM53C-206ENST00000507506 988 ntTSL 223.76■■□□□ 1.397e-7■□□□□ 9.1
YBX3P16989 FAM53C-202ENST00000434981 1686 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.077e-7■□□□□ 9.1
YBX3P16989 TTC7B-215ENST00000557766 708 ntTSL 314.58□□□□□ -0.087e-7■□□□□ 9.1
YBX3P16989 FAM53C-201ENST00000239906 4377 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.597e-7■□□□□ 9.1
YBX3P16989 PRMT1-204ENST00000525616 780 ntTSL 230.83■■■□□ 2.534e-7■□□□□ 9.1
Retrieved 100 of 29,075 protein–RNA pairs in 120.6 ms