RNA–Protein interactions for RNA: ENST00000554390.5

PPP4R3A-202, Transcript of protein phosphatase 4 regulatory subunit 3A, humanhuman

TSL 1 (best)

Gene PPP4R3A, Length 2,953 nt, Biotype non stop decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PPP4R3A-202ENST00000554390 NISCHQ9Y2I1 1504 aa33.39■■■□□ 2.94
PPP4R3A-202ENST00000554390 SHROOM4Q9ULL8 1493 aa29.66■■■□□ 2.34
PPP4R3A-202ENST00000554390 SUPT5HO00267 1087 aaKnown RBP29.22■■■□□ 2.27
PPP4R3A-202ENST00000554390 DCAF8L2P0C7V8 631 aa28.64■■■□□ 2.17
PPP4R3A-202ENST00000554390 HRCP23327 699 aa28.45■■■□□ 2.15
PPP4R3A-202ENST00000554390 ZCCHC6Q5VYS8 1495 aaKnown RBP28.27■■■□□ 2.12
PPP4R3A-202ENST00000554390 MYO15BQ96JP2 1530 aa28.22■■■□□ 2.11
PPP4R3A-202ENST00000554390 CHIC1Q5VXU3 224 aa28.15■■■□□ 2.1
PPP4R3A-202ENST00000554390 CCDC180Q9P1Z9 1646 aa28.05■■■□□ 2.08
PPP4R3A-202ENST00000554390 PCGF6Q9BYE7 350 aa28.04■■■□□ 2.08
PPP4R3A-202ENST00000554390 PPARGC1BQ86YN6 1023 aaKnown RBP27.87■■■□□ 2.05
PPP4R3A-202ENST00000554390 LOC105371045A0A1W2PR82 267 aa27.78■■■□□ 2.04
PPP4R3A-202ENST00000554390 PELP1Q8IZL8 1130 aaKnown RBP27.36■■□□□ 1.97
PPP4R3A-202ENST00000554390 EHMT2Q96KQ7 1210 aa27.36■■□□□ 1.97
PPP4R3A-202ENST00000554390 DCAF1Q9Y4B6 1507 aa27.24■■□□□ 1.95
PPP4R3A-202ENST00000554390 FAM9AQ8IZU1 332 aaPredicted RBP27.18■■□□□ 1.94
PPP4R3A-202ENST00000554390 TRIM26Q12899 539 aaPredicted RBP27.01■■□□□ 1.91
PPP4R3A-202ENST00000554390 SCAF1Q9H7N4 1312 aaKnown RBP26.89■■□□□ 1.9
PPP4R3A-202ENST00000554390 TRIM41Q8WV44 630 aa26.84■■□□□ 1.89
PPP4R3A-202ENST00000554390 ZEB1P37275 1124 aaPredicted RBP26.78■■□□□ 1.88
PPP4R3A-202ENST00000554390 SCRIBQ14160 1630 aa26.76■■□□□ 1.87
PPP4R3A-202ENST00000554390 ABCC9O60706 1549 aa26.75■■□□□ 1.87
PPP4R3A-202ENST00000554390 RSF1Q96T23 1441 aaPredicted RBP26.64■■□□□ 1.85
PPP4R3A-202ENST00000554390 RB1CC1Q8TDY2 1594 aa26.51■■□□□ 1.83
PPP4R3A-202ENST00000554390 TTBK1Q5TCY1 1321 aaPredicted RBP26.47■■□□□ 1.83
PPP4R3A-202ENST00000554390 CECR2Q9BXF3 1484 aa26.31■■□□□ 1.8
PPP4R3A-202ENST00000554390 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP26.28■■□□□ 1.8
PPP4R3A-202ENST00000554390 MYT1Q01538 1121 aa26.27■■□□□ 1.8
PPP4R3A-202ENST00000554390 ACIN1Q9UKV3 1341 aaKnown RBP26.25■■□□□ 1.79
PPP4R3A-202ENST00000554390 NEUROD1Q13562 356 aa26.19■■□□□ 1.78
PPP4R3A-202ENST00000554390 MROH2BQ7Z745 1585 aa26.1■■□□□ 1.77
PPP4R3A-202ENST00000554390 CCER1Q8TC90 406 aaPredicted RBP26.04■■□□□ 1.76
PPP4R3A-202ENST00000554390 GTF3C3Q9Y5Q9 886 aa26.04■■□□□ 1.76
PPP4R3A-202ENST00000554390 WIZO95785 1651 aa25.99■■□□□ 1.75
PPP4R3A-202ENST00000554390 NACADO15069 1562 aa25.94■■□□□ 1.74
PPP4R3A-202ENST00000554390 CENPBP07199 599 aaPredicted RBP25.92■■□□□ 1.74
PPP4R3A-202ENST00000554390 DIEXFQ68CQ4 756 aaKnown RBP25.83■■□□□ 1.73
PPP4R3A-202ENST00000554390 ABCC8Q09428 1581 aa25.75■■□□□ 1.71
PPP4R3A-202ENST00000554390 BAZ1AQ9NRL2 1556 aaPredicted RBP25.69■■□□□ 1.7
PPP4R3A-202ENST00000554390 CCDC88BA6NC98 1476 aa25.67■■□□□ 1.7
PPP4R3A-202ENST00000554390 UBTFP17480 764 aaKnown RBP25.65■■□□□ 1.7
PPP4R3A-202ENST00000554390 RANGAP1P46060 587 aaPredicted RBP25.62■■□□□ 1.69
PPP4R3A-202ENST00000554390 SOGA1O94964 1423 aa25.6■■□□□ 1.69
PPP4R3A-202ENST00000554390 EIF4G1Q04637 1599 aaKnown RBP25.57■■□□□ 1.68
PPP4R3A-202ENST00000554390 YTHDC1Q96MU7 727 aaKnown RBP25.55■■□□□ 1.68
PPP4R3A-202ENST00000554390 RUSC2Q8N2Y8 1516 aa25.53■■□□□ 1.68
PPP4R3A-202ENST00000554390 PABPN1Q86U42 306 aaKnown RBP eCLIP25.52■■□□□ 1.68
PPP4R3A-202ENST00000554390 CEP162Q5TB80 1403 aa25.49■■□□□ 1.67
PPP4R3A-202ENST00000554390 HNRNPUL2Q1KMD3 747 aaKnown RBP25.48■■□□□ 1.67
PPP4R3A-202ENST00000554390 TOP2AP11388 1531 aaKnown RBP25.43■■□□□ 1.66
PPP4R3A-202ENST00000554390 CSRNP3Q8WYN3 585 aa25.39■■□□□ 1.65
PPP4R3A-202ENST00000554390 SMARCA4P51532 1647 aa25.38■■□□□ 1.65
PPP4R3A-202ENST00000554390 SMARCA2P51531 1590 aa25.36■■□□□ 1.65
PPP4R3A-202ENST00000554390 ZNF316A6NFI3 1004 aaPredicted RBP25.35■■□□□ 1.65
PPP4R3A-202ENST00000554390 UNC13AQ9UPW8 1703 aa25.22■■□□□ 1.63
PPP4R3A-202ENST00000554390 WRNQ14191 1432 aaPredicted RBP eCLIP25.21■■□□□ 1.63
PPP4R3A-202ENST00000554390 TNIKQ9UKE5 1360 aa25.21■■□□□ 1.63
PPP4R3A-202ENST00000554390 MIER1Q8N108 512 aa25.18■■□□□ 1.62
PPP4R3A-202ENST00000554390 GOLGA3Q08378 1498 aa25.03■■□□□ 1.6
PPP4R3A-202ENST00000554390 EEA1Q15075 1411 aa25.02■■□□□ 1.6
PPP4R3A-202ENST00000554390 APLP2Q06481 763 aa24.97■■□□□ 1.59
PPP4R3A-202ENST00000554390 CLIP1P30622 1438 aa24.94■■□□□ 1.58
PPP4R3A-202ENST00000554390 SYNJ1O43426 1573 aa24.9■■□□□ 1.58
PPP4R3A-202ENST00000554390 BICRAQ9NZM4 1560 aa24.89■■□□□ 1.57
PPP4R3A-202ENST00000554390 RAPGEF2Q9Y4G8 1499 aa24.85■■□□□ 1.57
PPP4R3A-202ENST00000554390 CEP164Q9UPV0 1460 aa24.83■■□□□ 1.57
PPP4R3A-202ENST00000554390 ITGAEP38570 1179 aa24.83■■□□□ 1.57
PPP4R3A-202ENST00000554390 SUPT16HQ9Y5B9 1047 aaKnown RBP24.8■■□□□ 1.56
PPP4R3A-202ENST00000554390 KANK4Q5T7N3 995 aaPredicted RBP24.75■■□□□ 1.55
PPP4R3A-202ENST00000554390 CLSPNQ9HAW4 1339 aa24.73■■□□□ 1.55
PPP4R3A-202ENST00000554390 VPS8Q8N3P4 1428 aa24.72■■□□□ 1.55
PPP4R3A-202ENST00000554390 KIF21BO75037 1637 aa24.71■■□□□ 1.55
PPP4R3A-202ENST00000554390 ANP32EQ9BTT0 268 aa24.71■■□□□ 1.55
PPP4R3A-202ENST00000554390 BAZ1BQ9UIG0 1483 aaKnown RBP24.71■■□□□ 1.55
PPP4R3A-202ENST00000554390 ATAD2BQ9ULI0 1458 aa24.7■■□□□ 1.54
PPP4R3A-202ENST00000554390 PEG3Q9GZU2 1588 aa24.69■■□□□ 1.54
PPP4R3A-202ENST00000554390 TSHZ2Q9NRE2 1034 aa24.68■■□□□ 1.54
PPP4R3A-202ENST00000554390 BCL11AQ9H165 835 aa24.61■■□□□ 1.53
PPP4R3A-202ENST00000554390 KCNH8Q96L42 1107 aa24.53■■□□□ 1.52
PPP4R3A-202ENST00000554390 DHX57Q6P158 1386 aaKnown RBP24.52■■□□□ 1.52
PPP4R3A-202ENST00000554390 TOP2BQ02880 1626 aa24.44■■□□□ 1.5
PPP4R3A-202ENST00000554390 ARAP1Q96P48 1450 aa24.39■■□□□ 1.5
PPP4R3A-202ENST00000554390 ATP1B4Q9UN42 357 aaPredicted RBP24.39■■□□□ 1.5
PPP4R3A-202ENST00000554390 HIRIP3Q9BW71 556 aaPredicted RBP24.39■■□□□ 1.49
PPP4R3A-202ENST00000554390 BCANQ96GW7 911 aa24.37■■□□□ 1.49
PPP4R3A-202ENST00000554390 P3H3Q8IVL6 736 aa24.36■■□□□ 1.49
PPP4R3A-202ENST00000554390 PRXQ9BXM0 1461 aa24.3■■□□□ 1.48
PPP4R3A-202ENST00000554390 BIVM-ERCC5R4GMW8 1640 aa24.29■■□□□ 1.48
PPP4R3A-202ENST00000554390 SIN3AQ96ST3 1273 aa24.28■■□□□ 1.48
PPP4R3A-202ENST00000554390 CUX1P39880 1505 aa24.25■■□□□ 1.47
PPP4R3A-202ENST00000554390 FAM50AQ14320 339 aaKnown RBP24.24■■□□□ 1.47
PPP4R3A-202ENST00000554390 ERICH3Q5RHP9 1530 aa24.24■■□□□ 1.47
PPP4R3A-202ENST00000554390 DDX10Q13206 875 aaKnown RBP24.22■■□□□ 1.47
PPP4R3A-202ENST00000554390 CCNB3Q8WWL7 1395 aa24.21■■□□□ 1.47
PPP4R3A-202ENST00000554390 KIF27Q86VH2 1401 aa24.19■■□□□ 1.46
PPP4R3A-202ENST00000554390 RAB3GAP2Q9H2M9 1393 aa24.16■■□□□ 1.46
PPP4R3A-202ENST00000554390 FKBP8Q14318 412 aa24.15■■□□□ 1.46
PPP4R3A-202ENST00000554390 ARHGAP35Q9NRY4 1499 aa24.14■■□□□ 1.46
PPP4R3A-202ENST00000554390 RBM19Q9Y4C8 960 aaKnown RBP24.11■■□□□ 1.45
PPP4R3A-202ENST00000554390 RRBP1Q9P2E9 1410 aaKnown RBP24.09■■□□□ 1.45
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms