RNA–Protein interactions for RNA: ENST00000554308.5

PPP4R3A-201, Transcript of protein phosphatase 4 regulatory subunit 3A, humanhuman

TSL 5

Gene PPP4R3A, Length 2,515 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PPP4R3A-201ENST00000554308 NISCHQ9Y2I1 1504 aa31.79■■■□□ 2.68
PPP4R3A-201ENST00000554308 CCDC180Q9P1Z9 1646 aa27.31■■□□□ 1.96
PPP4R3A-201ENST00000554308 DCAF8L2P0C7V8 631 aa26.72■■□□□ 1.87
PPP4R3A-201ENST00000554308 ZCCHC6Q5VYS8 1495 aaKnown RBP26.72■■□□□ 1.87
PPP4R3A-201ENST00000554308 SHROOM4Q9ULL8 1493 aa26.63■■□□□ 1.85
PPP4R3A-201ENST00000554308 DCAF1Q9Y4B6 1507 aa26.06■■□□□ 1.76
PPP4R3A-201ENST00000554308 ABCC9O60706 1549 aa26.01■■□□□ 1.75
PPP4R3A-201ENST00000554308 SUPT5HO00267 1087 aaKnown RBP25.82■■□□□ 1.72
PPP4R3A-201ENST00000554308 MYO15BQ96JP2 1530 aa25.59■■□□□ 1.69
PPP4R3A-201ENST00000554308 SCRIBQ14160 1630 aa25.51■■□□□ 1.67
PPP4R3A-201ENST00000554308 NACADO15069 1562 aa25.47■■□□□ 1.67
PPP4R3A-201ENST00000554308 RB1CC1Q8TDY2 1594 aa25.22■■□□□ 1.63
PPP4R3A-201ENST00000554308 RSF1Q96T23 1441 aaPredicted RBP24.89■■□□□ 1.57
PPP4R3A-201ENST00000554308 CECR2Q9BXF3 1484 aa24.84■■□□□ 1.57
PPP4R3A-201ENST00000554308 PABPN1Q86U42 306 aaKnown RBP eCLIP24.77■■□□□ 1.56
PPP4R3A-201ENST00000554308 UNC13AQ9UPW8 1703 aa24.71■■□□□ 1.55
PPP4R3A-201ENST00000554308 CHIC1Q5VXU3 224 aa24.7■■□□□ 1.54
PPP4R3A-201ENST00000554308 MROH2BQ7Z745 1585 aa24.67■■□□□ 1.54
PPP4R3A-201ENST00000554308 BICRAQ9NZM4 1560 aa24.5■■□□□ 1.51
PPP4R3A-201ENST00000554308 BAZ1AQ9NRL2 1556 aaPredicted RBP24.47■■□□□ 1.51
PPP4R3A-201ENST00000554308 WIZO95785 1651 aa24.47■■□□□ 1.51
PPP4R3A-201ENST00000554308 SMARCA4P51532 1647 aa24.33■■□□□ 1.48
PPP4R3A-201ENST00000554308 TRIM41Q8WV44 630 aa24.12■■□□□ 1.45
PPP4R3A-201ENST00000554308 TOP2AP11388 1531 aaKnown RBP24.08■■□□□ 1.45
PPP4R3A-201ENST00000554308 HRCP23327 699 aa24.05■■□□□ 1.44
PPP4R3A-201ENST00000554308 CCDC88BA6NC98 1476 aa24.01■■□□□ 1.43
PPP4R3A-201ENST00000554308 LOC105371045A0A1W2PR82 267 aa23.97■■□□□ 1.43
PPP4R3A-201ENST00000554308 SMARCA2P51531 1590 aa23.93■■□□□ 1.42
PPP4R3A-201ENST00000554308 ATAD2BQ9ULI0 1458 aa23.92■■□□□ 1.42
PPP4R3A-201ENST00000554308 PEG3Q9GZU2 1588 aa23.89■■□□□ 1.41
PPP4R3A-201ENST00000554308 FAM9AQ8IZU1 332 aaPredicted RBP23.88■■□□□ 1.41
PPP4R3A-201ENST00000554308 PCGF6Q9BYE7 350 aa23.86■■□□□ 1.41
PPP4R3A-201ENST00000554308 BAZ1BQ9UIG0 1483 aaKnown RBP23.83■■□□□ 1.41
PPP4R3A-201ENST00000554308 EIF4G1Q04637 1599 aaKnown RBP23.77■■□□□ 1.4
PPP4R3A-201ENST00000554308 EHMT2Q96KQ7 1210 aa23.72■■□□□ 1.39
PPP4R3A-201ENST00000554308 PPARGC1BQ86YN6 1023 aaKnown RBP23.7■■□□□ 1.38
PPP4R3A-201ENST00000554308 ABCC8Q09428 1581 aa23.69■■□□□ 1.38
PPP4R3A-201ENST00000554308 NCAPD3P42695 1498 aa23.6■■□□□ 1.37
PPP4R3A-201ENST00000554308 HMGXB3Q12766 1538 aa23.49■■□□□ 1.35
PPP4R3A-201ENST00000554308 WRNQ14191 1432 aaPredicted RBP eCLIP23.42■■□□□ 1.34
PPP4R3A-201ENST00000554308 CC2D2AQ9P2K1 1620 aa23.37■■□□□ 1.33
PPP4R3A-201ENST00000554308 SOGA1O94964 1423 aa23.36■■□□□ 1.33
PPP4R3A-201ENST00000554308 SYNJ1O43426 1573 aa23.27■■□□□ 1.32
PPP4R3A-201ENST00000554308 RUSC2Q8N2Y8 1516 aa23.26■■□□□ 1.31
PPP4R3A-201ENST00000554308 CSRNP3Q8WYN3 585 aa23.21■■□□□ 1.31
PPP4R3A-201ENST00000554308 CFTRP13569 1480 aa23.2■■□□□ 1.3
PPP4R3A-201ENST00000554308 TRIM26Q12899 539 aaPredicted RBP23.15■■□□□ 1.3
PPP4R3A-201ENST00000554308 CADPSQ9ULU8 1353 aa23.12■■□□□ 1.29
PPP4R3A-201ENST00000554308 EEA1Q15075 1411 aa23.1■■□□□ 1.29
PPP4R3A-201ENST00000554308 UBTFP17480 764 aaKnown RBP23.09■■□□□ 1.29
PPP4R3A-201ENST00000554308 DNAJC5BQ9UF47 199 aa23.06■■□□□ 1.28
PPP4R3A-201ENST00000554308 TOP2BQ02880 1626 aa23.05■■□□□ 1.28
PPP4R3A-201ENST00000554308 CUX1P39880 1505 aa23■■□□□ 1.27
PPP4R3A-201ENST00000554308 BIVM-ERCC5R4GMW8 1640 aa22.94■■□□□ 1.26
PPP4R3A-201ENST00000554308 NESP48681 1621 aa22.92■■□□□ 1.26
PPP4R3A-201ENST00000554308 TNIKQ9UKE5 1360 aa22.92■■□□□ 1.26
PPP4R3A-201ENST00000554308 GOLGA3Q08378 1498 aa22.91■■□□□ 1.26
PPP4R3A-201ENST00000554308 CEP162Q5TB80 1403 aa22.9■■□□□ 1.26
PPP4R3A-201ENST00000554308 FANCD2Q9BXW9 1451 aa22.87■■□□□ 1.25
PPP4R3A-201ENST00000554308 CEP164Q9UPV0 1460 aa22.86■■□□□ 1.25
PPP4R3A-201ENST00000554308 RANGAP1P46060 587 aaPredicted RBP22.84■■□□□ 1.25
PPP4R3A-201ENST00000554308 PRDM2Q13029 1718 aa22.84■■□□□ 1.25
PPP4R3A-201ENST00000554308 RAPGEF2Q9Y4G8 1499 aa22.81■■□□□ 1.24
PPP4R3A-201ENST00000554308 KIF27Q86VH2 1401 aa22.78■■□□□ 1.24
PPP4R3A-201ENST00000554308 KIF21BO75037 1637 aa22.76■■□□□ 1.23
PPP4R3A-201ENST00000554308 TTBK1Q5TCY1 1321 aaPredicted RBP22.74■■□□□ 1.23
PPP4R3A-201ENST00000554308 FGD5Q6ZNL6 1462 aa22.73■■□□□ 1.23
PPP4R3A-201ENST00000554308 ZEB1P37275 1124 aaPredicted RBP22.71■■□□□ 1.23
PPP4R3A-201ENST00000554308 CUX2O14529 1486 aa22.71■■□□□ 1.23
PPP4R3A-201ENST00000554308 LAMC3Q9Y6N6 1575 aa22.68■■□□□ 1.22
PPP4R3A-201ENST00000554308 PRXQ9BXM0 1461 aa22.66■■□□□ 1.22
PPP4R3A-201ENST00000554308 CLIP1P30622 1438 aa22.64■■□□□ 1.22
PPP4R3A-201ENST00000554308 PDS5BQ9NTI5 1447 aa22.63■■□□□ 1.21
PPP4R3A-201ENST00000554308 TOPBP1Q92547 1522 aa22.62■■□□□ 1.21
PPP4R3A-201ENST00000554308 RAD54L2Q9Y4B4 1467 aa22.61■■□□□ 1.21
PPP4R3A-201ENST00000554308 IGF1RP08069 1367 aa22.61■■□□□ 1.21
PPP4R3A-201ENST00000554308 DNMBPQ6XZF7 1577 aa22.59■■□□□ 1.21
PPP4R3A-201ENST00000554308 POLA1P09884 1462 aaPredicted RBP22.57■■□□□ 1.2
PPP4R3A-201ENST00000554308 URB2Q14146 1524 aaKnown RBP22.55■■□□□ 1.2
PPP4R3A-201ENST00000554308 ERICH3Q5RHP9 1530 aa22.55■■□□□ 1.2
PPP4R3A-201ENST00000554308 SCAF1Q9H7N4 1312 aaKnown RBP22.52■■□□□ 1.2
PPP4R3A-201ENST00000554308 CARMIL1Q5VZK9 1371 aa22.5■■□□□ 1.19
PPP4R3A-201ENST00000554308 KIF21AQ7Z4S6 1674 aa22.46■■□□□ 1.19
PPP4R3A-201ENST00000554308 ABCA10Q8WWZ4 1543 aa22.44■■□□□ 1.18
PPP4R3A-201ENST00000554308 TDRD9Q8NDG6 1382 aaKnown RBP22.43■■□□□ 1.18
PPP4R3A-201ENST00000554308 VPS8Q8N3P4 1428 aa22.42■■□□□ 1.18
PPP4R3A-201ENST00000554308 APLP2Q06481 763 aa22.42■■□□□ 1.18
PPP4R3A-201ENST00000554308 ARAP1Q96P48 1450 aa22.32■■□□□ 1.16
PPP4R3A-201ENST00000554308 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP22.31■■□□□ 1.16
PPP4R3A-201ENST00000554308 GAPVD1Q14C86 1478 aa22.27■■□□□ 1.16
PPP4R3A-201ENST00000554308 ARHGAP35Q9NRY4 1499 aa22.27■■□□□ 1.16
PPP4R3A-201ENST00000554308 P3H3Q8IVL6 736 aa22.27■■□□□ 1.16
PPP4R3A-201ENST00000554308 MRC2Q9UBG0 1479 aa22.27■■□□□ 1.15
PPP4R3A-201ENST00000554308 PELP1Q8IZL8 1130 aaKnown RBP22.25■■□□□ 1.15
PPP4R3A-201ENST00000554308 ERCC6Q03468 1493 aa22.22■■□□□ 1.15
PPP4R3A-201ENST00000554308 WDR97A6NE52 1622 aa22.2■■□□□ 1.14
PPP4R3A-201ENST00000554308 AQRO60306 1485 aaKnown RBP eCLIP22.2■■□□□ 1.146e-8■■■■□ 19.4
PPP4R3A-201ENST00000554308 CCER1Q8TC90 406 aaPredicted RBP22.19■■□□□ 1.14
PPP4R3A-201ENST00000554308 KANK4Q5T7N3 995 aaPredicted RBP22.18■■□□□ 1.14
PPP4R3A-201ENST00000554308 TARBP1Q13395 1621 aaKnown RBP22.17■■□□□ 1.14
Retrieved 100 of 20,778 RNA–protein pairs in 98 ms