RNA–Protein interactions for RNA: ENST00000554574.1

PPP4R3A-204, Transcript of protein phosphatase 4 regulatory subunit 3A, humanhuman

TSL 2

Gene PPP4R3A, Length 1,944 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PPP4R3A-204ENST00000554574 CHIC1Q5VXU3 224 aa16.73■□□□□ 0.27
PPP4R3A-204ENST00000554574 AEBP2Q6ZN18 517 aaPredicted RBP16.65■□□□□ 0.26
PPP4R3A-204ENST00000554574 PHF23Q9BUL5 403 aaPredicted RBP14.81□□□□□ -0.04
PPP4R3A-204ENST00000554574 SENP3Q9H4L4 574 aaPredicted RBP13.96□□□□□ -0.17
PPP4R3A-204ENST00000554574 PLPPR3Q6T4P5 718 aa13.79□□□□□ -0.2
PPP4R3A-204ENST00000554574 ADRA2BP18089 450 aa12.98□□□□□ -0.33
PPP4R3A-204ENST00000554574 FOXD1Q16676 465 aa12.95□□□□□ -0.34
PPP4R3A-204ENST00000554574 POTEDQ86YR6 584 aa12.94□□□□□ -0.34
PPP4R3A-204ENST00000554574 PPP6R1Q9UPN7 881 aa12.9□□□□□ -0.34
PPP4R3A-204ENST00000554574 KCNA4P22459 653 aa12.6□□□□□ -0.39
PPP4R3A-204ENST00000554574 EHMT2Q96KQ7 1210 aa12.36□□□□□ -0.43
PPP4R3A-204ENST00000554574 PIAS4Q8N2W9 510 aaPredicted RBP12.32□□□□□ -0.44
PPP4R3A-204ENST00000554574 PPP4R3CPQ6ZMV5 832 aa12.24□□□□□ -0.45
PPP4R3A-204ENST00000554574 SLC4A1APQ9BWU0 796 aaKnown RBP12.05□□□□□ -0.48
PPP4R3A-204ENST00000554574 NCBP3Q53F19 620 aaKnown RBP12.01□□□□□ -0.49
PPP4R3A-204ENST00000554574 CSRNP3Q8WYN3 585 aa11.96□□□□□ -0.49
PPP4R3A-204ENST00000554574 NPM3O75607 178 aaKnown RBP11.92□□□□□ -0.5
PPP4R3A-204ENST00000554574 MSH5O43196 834 aa11.86□□□□□ -0.51
PPP4R3A-204ENST00000554574 CNKSR2Q8WXI2 1034 aa11.76□□□□□ -0.53
PPP4R3A-204ENST00000554574 SCAF1Q9H7N4 1312 aaKnown RBP11.7□□□□□ -0.54
PPP4R3A-204ENST00000554574 ZBTB22O15209 634 aa11.63□□□□□ -0.55
PPP4R3A-204ENST00000554574 MAPK8IP2Q13387 824 aaPredicted RBP11.56□□□□□ -0.56
PPP4R3A-204ENST00000554574 DNAJC5BQ9UF47 199 aa11.44□□□□□ -0.58
PPP4R3A-204ENST00000554574 FOXD4L1Q9NU39 408 aa11.4□□□□□ -0.58
PPP4R3A-204ENST00000554574 RNF216Q9NWF9 866 aaPredicted RBP11.4□□□□□ -0.58
PPP4R3A-204ENST00000554574 DMRT2Q9Y5R5 561 aa11.25□□□□□ -0.61
PPP4R3A-204ENST00000554574 HOXD11P31277 338 aaPredicted RBP11.23□□□□□ -0.61
PPP4R3A-204ENST00000554574 SLC4A2P04920 1241 aa11.14□□□□□ -0.63
PPP4R3A-204ENST00000554574 MYCNP04198 464 aaPredicted RBP10.96□□□□□ -0.65
PPP4R3A-204ENST00000554574 ATXN8OSP0DMR3 200 aa10.92□□□□□ -0.66
PPP4R3A-204ENST00000554574 FKBP8Q14318 412 aa10.77□□□□□ -0.69
PPP4R3A-204ENST00000554574 RTN4Q9NQC3 1192 aaKnown RBP10.76□□□□□ -0.69
PPP4R3A-204ENST00000554574 DCAF8L1A6NGE4 600 aa10.74□□□□□ -0.69
PPP4R3A-204ENST00000554574 AMER1Q5JTC6 1135 aaPredicted RBP10.7□□□□□ -0.7
PPP4R3A-204ENST00000554574 ATF5Q9Y2D1 282 aaPredicted RBP10.7□□□□□ -0.7
PPP4R3A-204ENST00000554574 GRWD1Q9BQ67 446 aaKnown RBP eCLIP10.68□□□□□ -0.71e-8■□□□□ 10.3
PPP4R3A-204ENST00000554574 U3KPZ7 1027 aaPredicted RBP10.61□□□□□ -0.71
PPP4R3A-204ENST00000554574 SAMD1Q6SPF0 538 aaPredicted RBP10.58□□□□□ -0.72
PPP4R3A-204ENST00000554574 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP10.57□□□□□ -0.72
PPP4R3A-204ENST00000554574 HNRNPUL2Q1KMD3 747 aaKnown RBP10.57□□□□□ -0.72
PPP4R3A-204ENST00000554574 SLC24A1O60721 1099 aa10.55□□□□□ -0.72
PPP4R3A-204ENST00000554574 CACNB1Q02641 598 aaPredicted RBP10.51□□□□□ -0.73
PPP4R3A-204ENST00000554574 ZNF219Q9P2Y4 722 aaPredicted RBP10.41□□□□□ -0.74
PPP4R3A-204ENST00000554574 APLP2Q06481 763 aa10.31□□□□□ -0.76
PPP4R3A-204ENST00000554574 NISCHQ9Y2I1 1504 aa10.31□□□□□ -0.76
PPP4R3A-204ENST00000554574 MKRN4PQ13434 485 aaPredicted RBP10.25□□□□□ -0.77
PPP4R3A-204ENST00000554574 SPDYE4A6NLX3 237 aa10.23□□□□□ -0.77
PPP4R3A-204ENST00000554574 SPINK5Q9NQ38 1064 aaPredicted RBP10.17□□□□□ -0.78
PPP4R3A-204ENST00000554574 FBXO3Q9UK99 471 aa10.17□□□□□ -0.78
PPP4R3A-204ENST00000554574 PROM2Q8N271 834 aa10.16□□□□□ -0.78
PPP4R3A-204ENST00000554574 TRHP20396 242 aaPredicted RBP10.15□□□□□ -0.78
PPP4R3A-204ENST00000554574 FBLN2P98095 1184 aa10.12□□□□□ -0.79
PPP4R3A-204ENST00000554574 RNF39Q9H2S5 420 aa10.12□□□□□ -0.79
PPP4R3A-204ENST00000554574 POLA2Q14181 598 aa10.11□□□□□ -0.79
PPP4R3A-204ENST00000554574 VASPP50552 380 aaPredicted RBP10.08□□□□□ -0.8
PPP4R3A-204ENST00000554574 CAPN15O75808 1086 aa10.06□□□□□ -0.8
PPP4R3A-204ENST00000554574 IFNLR1Q8IU57 520 aaPredicted RBP10□□□□□ -0.81
PPP4R3A-204ENST00000554574 ABCB7O75027 752 aa9.96□□□□□ -0.81
PPP4R3A-204ENST00000554574 C1QBPQ07021 282 aaKnown RBP9.95□□□□□ -0.82
PPP4R3A-204ENST00000554574 POTEHQ6S545 545 aa9.94□□□□□ -0.82
PPP4R3A-204ENST00000554574 ZBTB12Q9Y330 459 aaPredicted RBP9.92□□□□□ -0.82
PPP4R3A-204ENST00000554574 PLCB2Q00722 1185 aa9.9□□□□□ -0.83
PPP4R3A-204ENST00000554574 PKD2Q13563 968 aa9.88□□□□□ -0.83
PPP4R3A-204ENST00000554574 DCAF8L2P0C7V8 631 aa9.85□□□□□ -0.83
PPP4R3A-204ENST00000554574 DSG3P32926 999 aa9.79□□□□□ -0.84
PPP4R3A-204ENST00000554574 ZNF692Q9BU19 519 aaPredicted RBP9.78□□□□□ -0.84
PPP4R3A-204ENST00000554574 OSCARQ8IYS5 282 aa9.77□□□□□ -0.85
PPP4R3A-204ENST00000554574 HAP1P54257 671 aaPredicted RBP9.76□□□□□ -0.85
PPP4R3A-204ENST00000554574 KLHL34Q8N239 644 aa9.76□□□□□ -0.85
PPP4R3A-204ENST00000554574 SPOCK2Q92563 424 aa9.75□□□□□ -0.85
PPP4R3A-204ENST00000554574 SSUH2Q9Y2M2 353 aa9.74□□□□□ -0.85
PPP4R3A-204ENST00000554574 SPDYE2BA6NHP3 402 aa9.73□□□□□ -0.85
PPP4R3A-204ENST00000554574 SPDYE6P0CI01 402 aa9.73□□□□□ -0.85
PPP4R3A-204ENST00000554574 SPDYE2Q495Y8 402 aa9.73□□□□□ -0.85
PPP4R3A-204ENST00000554574 STAG3Q9UJ98 1225 aa9.72□□□□□ -0.85
PPP4R3A-204ENST00000554574 PABPN1Q86U42 306 aaKnown RBP eCLIP9.69□□□□□ -0.86
PPP4R3A-204ENST00000554574 ECM2O94769 699 aaPredicted RBP9.68□□□□□ -0.86
PPP4R3A-204ENST00000554574 PLCD3Q8N3E9 789 aa9.68□□□□□ -0.86
PPP4R3A-204ENST00000554574 NPM1P06748 294 aaKnown RBP eCLIP9.64□□□□□ -0.87
PPP4R3A-204ENST00000554574 MIER1Q8N108 512 aa9.62□□□□□ -0.87
PPP4R3A-204ENST00000554574 RGL2O15211 777 aa9.61□□□□□ -0.87
PPP4R3A-204ENST00000554574 BBXQ8WY36 941 aaPredicted RBP9.61□□□□□ -0.87
PPP4R3A-204ENST00000554574 VSIG10Q8N0Z9 540 aa9.59□□□□□ -0.87
PPP4R3A-204ENST00000554574 ZBTB4Q9P1Z0 1013 aaPredicted RBP9.58□□□□□ -0.88
PPP4R3A-204ENST00000554574 PAXIP1Q6ZW49 1069 aaPredicted RBP9.56□□□□□ -0.88
PPP4R3A-204ENST00000554574 BCANQ96GW7 911 aa9.54□□□□□ -0.88
PPP4R3A-204ENST00000554574 CFAP44Q96MT7 982 aa9.53□□□□□ -0.88
PPP4R3A-204ENST00000554574 KDM2AQ9Y2K7 1162 aa9.52□□□□□ -0.88
PPP4R3A-204ENST00000554574 CIZ1Q9ULV3 898 aaPredicted RBP9.52□□□□□ -0.89
PPP4R3A-204ENST00000554574 PLEKHG5O94827 1062 aa9.48□□□□□ -0.89
PPP4R3A-204ENST00000554574 ZBTB47Q9UFB7 747 aaPredicted RBP9.48□□□□□ -0.89
PPP4R3A-204ENST00000554574 CHGAP10645 457 aaKnown RBP9.46□□□□□ -0.9
PPP4R3A-204ENST00000554574 PRKCSHP14314 528 aaPredicted RBP9.44□□□□□ -0.9
PPP4R3A-204ENST00000554574 SPRYD3Q8NCJ5 442 aa9.44□□□□□ -0.9
PPP4R3A-204ENST00000554574 TSHZ2Q9NRE2 1034 aa9.43□□□□□ -0.9
PPP4R3A-204ENST00000554574 TAOK2Q9UL54 1235 aa9.43□□□□□ -0.9
PPP4R3A-204ENST00000554574 TRIM41Q8WV44 630 aa9.4□□□□□ -0.9
PPP4R3A-204ENST00000554574 RNF25Q96BH1 459 aaPredicted RBP9.39□□□□□ -0.91
PPP4R3A-204ENST00000554574 NUBP1P53384 320 aa9.37□□□□□ -0.91
PPP4R3A-204ENST00000554574 HS6ST3Q8IZP7 471 aa9.37□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms