RNA–Protein interactions for RNA: ENST00000518585.1

CTNNA1-209, Transcript of catenin alpha 1, humanhuman

TSL 4

Gene CTNNA1, Length 568 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTNNA1-209ENST00000518585 AEBP2Q6ZN18 517 aaPredicted RBP22.51■■□□□ 1.19
CTNNA1-209ENST00000518585 CHIC1Q5VXU3 224 aa21.17■□□□□ 0.98
CTNNA1-209ENST00000518585 SENP3Q9H4L4 574 aaPredicted RBP19.36■□□□□ 0.69
CTNNA1-209ENST00000518585 PHF23Q9BUL5 403 aaPredicted RBP19.02■□□□□ 0.64
CTNNA1-209ENST00000518585 FOXD1Q16676 465 aa18.01■□□□□ 0.47
CTNNA1-209ENST00000518585 POTEDQ86YR6 584 aa17.08■□□□□ 0.32
CTNNA1-209ENST00000518585 MSH5O43196 834 aa17.05■□□□□ 0.32
CTNNA1-209ENST00000518585 PLPPR3Q6T4P5 718 aa16.83■□□□□ 0.28
CTNNA1-209ENST00000518585 PIAS4Q8N2W9 510 aaPredicted RBP16.83■□□□□ 0.28
CTNNA1-209ENST00000518585 PPP6R1Q9UPN7 881 aa16.57■□□□□ 0.24
CTNNA1-209ENST00000518585 ADRA2BP18089 450 aa16.54■□□□□ 0.24
CTNNA1-209ENST00000518585 MAPK8IP2Q13387 824 aaPredicted RBP15.26■□□□□ 0.03
CTNNA1-209ENST00000518585 DMRT2Q9Y5R5 561 aa15.26■□□□□ 0.03
CTNNA1-209ENST00000518585 SCAF1Q9H7N4 1312 aaKnown RBP15.25■□□□□ 0.03
CTNNA1-209ENST00000518585 CACNB1Q02641 598 aaPredicted RBP14.82□□□□□ -0.04
CTNNA1-209ENST00000518585 DCAF8L1A6NGE4 600 aa14.74□□□□□ -0.05
CTNNA1-209ENST00000518585 PPP4R3CPQ6ZMV5 832 aa14.68□□□□□ -0.06
CTNNA1-209ENST00000518585 HOXD11P31277 338 aaPredicted RBP14.59□□□□□ -0.07
CTNNA1-209ENST00000518585 CNKSR2Q8WXI2 1034 aa14.5□□□□□ -0.09
CTNNA1-209ENST00000518585 RNF39Q9H2S5 420 aa14.47□□□□□ -0.09
CTNNA1-209ENST00000518585 RNF216Q9NWF9 866 aaPredicted RBP14.42□□□□□ -0.1
CTNNA1-209ENST00000518585 C1QBPQ07021 282 aaKnown RBP14.28□□□□□ -0.12
CTNNA1-209ENST00000518585 DNAJC5BQ9UF47 199 aa14.17□□□□□ -0.14
CTNNA1-209ENST00000518585 NCBP3Q53F19 620 aaKnown RBP14.09□□□□□ -0.15
CTNNA1-209ENST00000518585 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.96□□□□□ -0.174e-8■□□□□ 10.1
CTNNA1-209ENST00000518585 NPM3O75607 178 aaKnown RBP13.8□□□□□ -0.2
CTNNA1-209ENST00000518585 U3KPZ7 1027 aaPredicted RBP13.57□□□□□ -0.24
CTNNA1-209ENST00000518585 CAPN15O75808 1086 aa13.53□□□□□ -0.24
CTNNA1-209ENST00000518585 SPINK5Q9NQ38 1064 aaPredicted RBP13.46□□□□□ -0.25
CTNNA1-209ENST00000518585 DSG3P32926 999 aa13.45□□□□□ -0.26
CTNNA1-209ENST00000518585 POTEHQ6S545 545 aa13.36□□□□□ -0.27
CTNNA1-209ENST00000518585 APLP2Q06481 763 aa13.3□□□□□ -0.28
CTNNA1-209ENST00000518585 KCNA4P22459 653 aa13.26□□□□□ -0.29
CTNNA1-209ENST00000518585 TRHP20396 242 aaPredicted RBP13.23□□□□□ -0.29
CTNNA1-209ENST00000518585 SLC4A2P04920 1241 aa13.22□□□□□ -0.29
CTNNA1-209ENST00000518585 ZNF219Q9P2Y4 722 aaPredicted RBP13.22□□□□□ -0.29
CTNNA1-209ENST00000518585 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.19□□□□□ -0.3
CTNNA1-209ENST00000518585 HNRNPUL2Q1KMD3 747 aaKnown RBP13.19□□□□□ -0.3
CTNNA1-209ENST00000518585 ABCB7O75027 752 aa13.15□□□□□ -0.3
CTNNA1-209ENST00000518585 SAMD1Q6SPF0 538 aaPredicted RBP13.07□□□□□ -0.32
CTNNA1-209ENST00000518585 RBM42Q9BTD8 480 aaKnown RBP12.94□□□□□ -0.34
CTNNA1-209ENST00000518585 MYCNP04198 464 aaPredicted RBP12.83□□□□□ -0.36
CTNNA1-209ENST00000518585 POLA2Q14181 598 aa12.78□□□□□ -0.36
CTNNA1-209ENST00000518585 CHRDL2Q6WN34 429 aa12.71□□□□□ -0.37
CTNNA1-209ENST00000518585 ZBTB12Q9Y330 459 aaPredicted RBP12.56□□□□□ -0.4
CTNNA1-209ENST00000518585 AKT1S1Q96B36 256 aa12.53□□□□□ -0.4
CTNNA1-209ENST00000518585 FOXD4L1Q9NU39 408 aa12.53□□□□□ -0.4
CTNNA1-209ENST00000518585 SLC4A1APQ9BWU0 796 aaKnown RBP12.52□□□□□ -0.41
CTNNA1-209ENST00000518585 ATF5Q9Y2D1 282 aaPredicted RBP12.46□□□□□ -0.41
CTNNA1-209ENST00000518585 SP7Q8TDD2 431 aaPredicted RBP12.39□□□□□ -0.43
CTNNA1-209ENST00000518585 OSCARQ8IYS5 282 aa12.38□□□□□ -0.43
CTNNA1-209ENST00000518585 REM2Q8IYK8 340 aaPredicted RBP12.37□□□□□ -0.43
CTNNA1-209ENST00000518585 PIP4P2Q8N4L2 257 aa12.32□□□□□ -0.44
CTNNA1-209ENST00000518585 PITPNM1O00562 1244 aa12.25□□□□□ -0.45
CTNNA1-209ENST00000518585 HAX1O00165 279 aa12.23□□□□□ -0.45
CTNNA1-209ENST00000518585 FXR2P51116 673 aaKnown RBP eCLIP12.19□□□□□ -0.465e-9■■■□□ 16.9
CTNNA1-209ENST00000518585 ATXN8OSP0DMR3 200 aa12.17□□□□□ -0.46
CTNNA1-209ENST00000518585 ZBTB22O15209 634 aa12.14□□□□□ -0.47
CTNNA1-209ENST00000518585 FBLN2P98095 1184 aa12.12□□□□□ -0.47
CTNNA1-209ENST00000518585 SPDYE2BA6NHP3 402 aa12.11□□□□□ -0.47
CTNNA1-209ENST00000518585 SPDYE6P0CI01 402 aa12.11□□□□□ -0.47
CTNNA1-209ENST00000518585 SPDYE2Q495Y8 402 aa12.11□□□□□ -0.47
CTNNA1-209ENST00000518585 CLEC11AQ9Y240 323 aa12□□□□□ -0.49
CTNNA1-209ENST00000518585 SPDYE1Q8NFV5 336 aaPredicted RBP11.98□□□□□ -0.49
CTNNA1-209ENST00000518585 PRKAR2AP13861 404 aaKnown RBP11.96□□□□□ -0.49
CTNNA1-209ENST00000518585 EVX2Q03828 476 aa11.94□□□□□ -0.5
CTNNA1-209ENST00000518585 ZNF692Q9BU19 519 aaPredicted RBP11.93□□□□□ -0.5
CTNNA1-209ENST00000518585 MKRN4PQ13434 485 aaPredicted RBP11.87□□□□□ -0.51
CTNNA1-209ENST00000518585 SSUH2Q9Y2M2 353 aa11.87□□□□□ -0.51
CTNNA1-209ENST00000518585 C19orf67A6NJJ6 358 aa11.81□□□□□ -0.52
CTNNA1-209ENST00000518585 PRR29P0C7W0 189 aa11.75□□□□□ -0.53
CTNNA1-209ENST00000518585 CHADLQ6NUI6 762 aa11.75□□□□□ -0.53
CTNNA1-209ENST00000518585 GABBR2O75899 941 aa11.73□□□□□ -0.53
CTNNA1-209ENST00000518585 PABPN1Q86U42 306 aaKnown RBP eCLIP11.72□□□□□ -0.53
CTNNA1-209ENST00000518585 LHX8Q68G74 356 aa11.62□□□□□ -0.55
CTNNA1-209ENST00000518585 CD44P16070 742 aaKnown RBP11.57□□□□□ -0.56
CTNNA1-209ENST00000518585 FARP1Q9Y4F1 1045 aaPredicted RBP11.55□□□□□ -0.56
CTNNA1-209ENST00000518585 CLCN6P51797 869 aa11.52□□□□□ -0.57
CTNNA1-209ENST00000518585 POTEIP0CG38 1075 aa11.42□□□□□ -0.58
CTNNA1-209ENST00000518585 DCBLD2Q96PD2 775 aa11.42□□□□□ -0.58
CTNNA1-209ENST00000518585 STAG3Q9UJ98 1225 aa11.39□□□□□ -0.59
CTNNA1-209ENST00000518585 ZRANB1Q9UGI0 708 aa11.37□□□□□ -0.59
CTNNA1-209ENST00000518585 ZNF579Q8NAF0 562 aaKnown RBP11.36□□□□□ -0.59
CTNNA1-209ENST00000518585 CSRNP3Q8WYN3 585 aa11.34□□□□□ -0.59
CTNNA1-209ENST00000518585 CREBZFQ9NS37 354 aa11.31□□□□□ -0.6
CTNNA1-209ENST00000518585 PAK3O75914 559 aaPredicted RBP11.28□□□□□ -0.6
CTNNA1-209ENST00000518585 SPDYE4A6NLX3 237 aa11.24□□□□□ -0.61
CTNNA1-209ENST00000518585 GALR2O43603 387 aaPredicted RBP11.22□□□□□ -0.61
CTNNA1-209ENST00000518585 NPM1P06748 294 aaKnown RBP eCLIP11.2□□□□□ -0.62
CTNNA1-209ENST00000518585 PLSCR2Q9NRY7 297 aa11.16□□□□□ -0.62
CTNNA1-209ENST00000518585 PHF12Q96QT6 1004 aa11.14□□□□□ -0.63
CTNNA1-209ENST00000518585 EHMT2Q96KQ7 1210 aa11.1□□□□□ -0.63
CTNNA1-209ENST00000518585 OTUD5Q96G74 571 aa11.08□□□□□ -0.64
CTNNA1-209ENST00000518585 MNX1P50219 401 aaPredicted RBP11.05□□□□□ -0.64
CTNNA1-209ENST00000518585 POTEB2H3BUK9 544 aa11.03□□□□□ -0.64
CTNNA1-209ENST00000518585 MS4A3Q96HJ5 214 aa11□□□□□ -0.65
CTNNA1-209ENST00000518585 PELP1Q8IZL8 1130 aaKnown RBP10.99□□□□□ -0.65
CTNNA1-209ENST00000518585 ASTLQ6HA08 431 aaPredicted RBP10.98□□□□□ -0.65
CTNNA1-209ENST00000518585 METRNQ9UJH8 293 aa10.98□□□□□ -0.65
CTNNA1-209ENST00000518585 SLC39A7Q92504 469 aa10.97□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 81.7 ms