RNA–Protein interactions for RNA: ENST00000471414.1

COPS3-206, Transcript of COP9 signalosome subunit 3, humanhuman

TSL 2

Gene COPS3, Length 455 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COPS3-206ENST00000471414 AEBP2Q6ZN18 517 aaPredicted RBP20.89■□□□□ 0.93
COPS3-206ENST00000471414 CHIC1Q5VXU3 224 aa20.13■□□□□ 0.81
COPS3-206ENST00000471414 SENP3Q9H4L4 574 aaPredicted RBP17.71■□□□□ 0.43
COPS3-206ENST00000471414 PHF23Q9BUL5 403 aaPredicted RBP17.7■□□□□ 0.42
COPS3-206ENST00000471414 FOXD1Q16676 465 aa16.49■□□□□ 0.23
COPS3-206ENST00000471414 PLPPR3Q6T4P5 718 aa16.19■□□□□ 0.18
COPS3-206ENST00000471414 PPP6R1Q9UPN7 881 aa15.68■□□□□ 0.1
COPS3-206ENST00000471414 ADRA2BP18089 450 aa15.6■□□□□ 0.09
COPS3-206ENST00000471414 PIAS4Q8N2W9 510 aaPredicted RBP15.42■□□□□ 0.06
COPS3-206ENST00000471414 MSH5O43196 834 aa15.28■□□□□ 0.04
COPS3-206ENST00000471414 POTEDQ86YR6 584 aa14.37□□□□□ -0.11
COPS3-206ENST00000471414 SCAF1Q9H7N4 1312 aaKnown RBP14.23□□□□□ -0.13
COPS3-206ENST00000471414 MAPK8IP2Q13387 824 aaPredicted RBP14.23□□□□□ -0.13
COPS3-206ENST00000471414 PPP4R3CPQ6ZMV5 832 aa14.23□□□□□ -0.13
COPS3-206ENST00000471414 DMRT2Q9Y5R5 561 aa14.13□□□□□ -0.15
COPS3-206ENST00000471414 CNKSR2Q8WXI2 1034 aa13.9□□□□□ -0.18
COPS3-206ENST00000471414 HOXD11P31277 338 aaPredicted RBP13.76□□□□□ -0.21
COPS3-206ENST00000471414 NCBP3Q53F19 620 aaKnown RBP13.75□□□□□ -0.21
COPS3-206ENST00000471414 RNF216Q9NWF9 866 aaPredicted RBP13.72□□□□□ -0.21
COPS3-206ENST00000471414 KCNA4P22459 653 aa13.63□□□□□ -0.23
COPS3-206ENST00000471414 NPM3O75607 178 aaKnown RBP13.61□□□□□ -0.23
COPS3-206ENST00000471414 DNAJC5BQ9UF47 199 aa13.41□□□□□ -0.26
COPS3-206ENST00000471414 DCAF8L1A6NGE4 600 aa13.35□□□□□ -0.27
COPS3-206ENST00000471414 RNF39Q9H2S5 420 aa13.11□□□□□ -0.31
COPS3-206ENST00000471414 GRWD1Q9BQ67 446 aaKnown RBP eCLIP12.98□□□□□ -0.33
COPS3-206ENST00000471414 SLC4A2P04920 1241 aa12.95□□□□□ -0.34
COPS3-206ENST00000471414 C1QBPQ07021 282 aaKnown RBP12.91□□□□□ -0.34
COPS3-206ENST00000471414 SLC4A1APQ9BWU0 796 aaKnown RBP12.88□□□□□ -0.35
COPS3-206ENST00000471414 U3KPZ7 1027 aaPredicted RBP12.84□□□□□ -0.35
COPS3-206ENST00000471414 CACNB1Q02641 598 aaPredicted RBP12.83□□□□□ -0.36
COPS3-206ENST00000471414 FOXD4L1Q9NU39 408 aa12.6□□□□□ -0.39
COPS3-206ENST00000471414 ZBTB22O15209 634 aa12.59□□□□□ -0.39
COPS3-206ENST00000471414 MYCNP04198 464 aaPredicted RBP12.57□□□□□ -0.4
COPS3-206ENST00000471414 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.53□□□□□ -0.4
COPS3-206ENST00000471414 HNRNPUL2Q1KMD3 747 aaKnown RBP12.53□□□□□ -0.4
COPS3-206ENST00000471414 SPINK5Q9NQ38 1064 aaPredicted RBP12.52□□□□□ -0.41
COPS3-206ENST00000471414 SAMD1Q6SPF0 538 aaPredicted RBP12.49□□□□□ -0.41
COPS3-206ENST00000471414 APLP2Q06481 763 aa12.43□□□□□ -0.42
COPS3-206ENST00000471414 CAPN15O75808 1086 aa12.4□□□□□ -0.42
COPS3-206ENST00000471414 DSG3P32926 999 aa12.37□□□□□ -0.43
COPS3-206ENST00000471414 ZNF219Q9P2Y4 722 aaPredicted RBP12.34□□□□□ -0.43
COPS3-206ENST00000471414 TRHP20396 242 aaPredicted RBP12.28□□□□□ -0.44
COPS3-206ENST00000471414 ATF5Q9Y2D1 282 aaPredicted RBP12.28□□□□□ -0.44
COPS3-206ENST00000471414 CSRNP3Q8WYN3 585 aa12.27□□□□□ -0.45
COPS3-206ENST00000471414 ATXN8OSP0DMR3 200 aa12.23□□□□□ -0.45
COPS3-206ENST00000471414 EHMT2Q96KQ7 1210 aa12.18□□□□□ -0.46
COPS3-206ENST00000471414 ABCB7O75027 752 aa12.17□□□□□ -0.46
COPS3-206ENST00000471414 POLA2Q14181 598 aa12.08□□□□□ -0.48
COPS3-206ENST00000471414 ZBTB12Q9Y330 459 aaPredicted RBP11.88□□□□□ -0.51
COPS3-206ENST00000471414 MKRN4PQ13434 485 aaPredicted RBP11.75□□□□□ -0.53
COPS3-206ENST00000471414 RBM42Q9BTD8 480 aaKnown RBP11.74□□□□□ -0.53
COPS3-206ENST00000471414 OSCARQ8IYS5 282 aa11.7□□□□□ -0.54
COPS3-206ENST00000471414 FBLN2P98095 1184 aa11.68□□□□□ -0.54
COPS3-206ENST00000471414 AKT1S1Q96B36 256 aa11.57□□□□□ -0.56
COPS3-206ENST00000471414 SPDYE2BA6NHP3 402 aa11.55□□□□□ -0.56
COPS3-206ENST00000471414 SPDYE6P0CI01 402 aa11.55□□□□□ -0.56
COPS3-206ENST00000471414 SPDYE2Q495Y8 402 aa11.55□□□□□ -0.56
COPS3-206ENST00000471414 SSUH2Q9Y2M2 353 aa11.5□□□□□ -0.57
COPS3-206ENST00000471414 REM2Q8IYK8 340 aaPredicted RBP11.46□□□□□ -0.57
COPS3-206ENST00000471414 ZNF692Q9BU19 519 aaPredicted RBP11.41□□□□□ -0.58
COPS3-206ENST00000471414 CHRDL2Q6WN34 429 aa11.37□□□□□ -0.59
COPS3-206ENST00000471414 PITPNM1O00562 1244 aa11.33□□□□□ -0.6
COPS3-206ENST00000471414 POTEHQ6S545 545 aa11.3□□□□□ -0.6
COPS3-206ENST00000471414 SPDYE4A6NLX3 237 aa11.28□□□□□ -0.6
COPS3-206ENST00000471414 PABPN1Q86U42 306 aaKnown RBP eCLIP11.27□□□□□ -0.61
COPS3-206ENST00000471414 SPDYE1Q8NFV5 336 aaPredicted RBP11.24□□□□□ -0.61
COPS3-206ENST00000471414 FXR2P51116 673 aaKnown RBP eCLIP11.21□□□□□ -0.61
COPS3-206ENST00000471414 PROM2Q8N271 834 aa11.21□□□□□ -0.61
COPS3-206ENST00000471414 PIP4P2Q8N4L2 257 aa11.19□□□□□ -0.62
COPS3-206ENST00000471414 CLEC11AQ9Y240 323 aa11.13□□□□□ -0.63
COPS3-206ENST00000471414 PRR29P0C7W0 189 aa11.03□□□□□ -0.64
COPS3-206ENST00000471414 FKBP8Q14318 412 aa11.03□□□□□ -0.64
COPS3-206ENST00000471414 STAG3Q9UJ98 1225 aa11.03□□□□□ -0.64
COPS3-206ENST00000471414 PRKAR2AP13861 404 aaKnown RBP11□□□□□ -0.65
COPS3-206ENST00000471414 CHADLQ6NUI6 762 aa10.93□□□□□ -0.66
COPS3-206ENST00000471414 CREBZFQ9NS37 354 aa10.93□□□□□ -0.66
COPS3-206ENST00000471414 FARP1Q9Y4F1 1045 aaPredicted RBP10.85□□□□□ -0.67
COPS3-206ENST00000471414 C19orf67A6NJJ6 358 aa10.83□□□□□ -0.68
COPS3-206ENST00000471414 MNX1P50219 401 aaPredicted RBP10.83□□□□□ -0.68
COPS3-206ENST00000471414 HAX1O00165 279 aa10.8□□□□□ -0.68
COPS3-206ENST00000471414 EVX2Q03828 476 aa10.8□□□□□ -0.68
COPS3-206ENST00000471414 SP7Q8TDD2 431 aaPredicted RBP10.76□□□□□ -0.69
COPS3-206ENST00000471414 FBXO3Q9UK99 471 aa10.72□□□□□ -0.69
COPS3-206ENST00000471414 CD44P16070 742 aaKnown RBP10.67□□□□□ -0.7
COPS3-206ENST00000471414 MIER1Q8N108 512 aa10.66□□□□□ -0.7
COPS3-206ENST00000471414 NPM1P06748 294 aaKnown RBP eCLIP10.65□□□□□ -0.7
COPS3-206ENST00000471414 VASPP50552 380 aaPredicted RBP10.61□□□□□ -0.71
COPS3-206ENST00000471414 PLCD3Q8N3E9 789 aa10.61□□□□□ -0.71
COPS3-206ENST00000471414 PLEKHG5O94827 1062 aa10.6□□□□□ -0.71
COPS3-206ENST00000471414 ZNF579Q8NAF0 562 aaKnown RBP10.59□□□□□ -0.71
COPS3-206ENST00000471414 ZBTB47Q9UFB7 747 aaPredicted RBP10.56□□□□□ -0.72
COPS3-206ENST00000471414 GABBR2O75899 941 aa10.55□□□□□ -0.72
COPS3-206ENST00000471414 ZRANB1Q9UGI0 708 aa10.55□□□□□ -0.72
COPS3-206ENST00000471414 NUBP1P53384 320 aa10.54□□□□□ -0.72
COPS3-206ENST00000471414 CLCN6P51797 869 aa10.52□□□□□ -0.73
COPS3-206ENST00000471414 RASEFQ8IZ41 740 aa10.52□□□□□ -0.73
COPS3-206ENST00000471414 PAK3O75914 559 aaPredicted RBP10.5□□□□□ -0.73
COPS3-206ENST00000471414 CCDC61Q9Y6R9 512 aa10.5□□□□□ -0.73
COPS3-206ENST00000471414 IFNLR1Q8IU57 520 aaPredicted RBP10.47□□□□□ -0.73
COPS3-206ENST00000471414 PHF12Q96QT6 1004 aa10.46□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 97.1 ms