Protein–RNA interactions for Protein: Q5TC82

RC3H1, Roquin-1, humanhuman

Known RBP Predictions only

Length 1,133 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RC3H1Q5TC82 NFATC4-202ENST00000413692 5700 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
RC3H1Q5TC82 GCK-203ENST00000395796 2539 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
RC3H1Q5TC82 IVL-201ENST00000368764 2153 ntAPPRIS P1 TSL 2 BASIC18.28■□□□□ 0.52
RC3H1Q5TC82 LINC00528-201ENST00000600723 2160 ntBASIC18.28■□□□□ 0.52
RC3H1Q5TC82 MAP4K1-208ENST00000589130 2654 ntTSL 5 BASIC18.28■□□□□ 0.52
RC3H1Q5TC82 PPRC1-201ENST00000278070 5330 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
RC3H1Q5TC82 INHBE-201ENST00000266646 2429 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
RC3H1Q5TC82 DDX5-201ENST00000225792 2554 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
RC3H1Q5TC82 PDGFRL-201ENST00000251630 1901 ntAPPRIS P1 TSL 5 BASIC18.28■□□□□ 0.52
RC3H1Q5TC82 TNFSF11-201ENST00000239849 911 ntTSL 5 BASIC18.28■□□□□ 0.52
RC3H1Q5TC82 VPS25-201ENST00000253794 1101 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
RC3H1Q5TC82 PIGF-202ENST00000306465 1061 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
RC3H1Q5TC82 CUTA-203ENST00000374500 937 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
RC3H1Q5TC82 CYB561D1-203ENST00000393709 620 ntAPPRIS ALT1 TSL 4 BASIC18.28■□□□□ 0.52
RC3H1Q5TC82 LINC00265-2P-201ENST00000413372 782 ntBASIC18.28■□□□□ 0.52
RC3H1Q5TC82 AC018814.1-201ENST00000418972 357 ntTSL 3 BASIC18.28■□□□□ 0.52
RC3H1Q5TC82 AL391415.1-201ENST00000439844 400 ntTSL 3 BASIC18.28■□□□□ 0.52
RC3H1Q5TC82 CSAG1-204ENST00000452779 627 ntAPPRIS P2 TSL 1 (best) BASIC18.28■□□□□ 0.52
RC3H1Q5TC82 PGAM1P12-201ENST00000505622 748 ntBASIC18.28■□□□□ 0.52
RC3H1Q5TC82 ZNF879-202ENST00000519896 543 ntTSL 4 BASIC18.28■□□□□ 0.52
RC3H1Q5TC82 FXYD6-FXYD2-201ENST00000532984 670 ntTSL 3 BASIC18.28■□□□□ 0.52
RC3H1Q5TC82 AC079174.1-201ENST00000552486 312 ntTSL 3 BASIC18.28■□□□□ 0.52
RC3H1Q5TC82 AC003043.1-201ENST00000588260 337 ntTSL 3 BASIC18.28■□□□□ 0.52
RC3H1Q5TC82 TTC23L-209ENST00000638320 1185 ntAPPRIS ALT2 TSL 5 BASIC18.28■□□□□ 0.52
RC3H1Q5TC82 NPNT-201ENST00000305572 3003 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
RC3H1Q5TC82 ADI1-201ENST00000327435 2391 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
RC3H1Q5TC82 DIAPH2-202ENST00000355827 3782 ntAPPRIS ALT2 TSL 5 BASIC18.28■□□□□ 0.52
RC3H1Q5TC82 POLR1E-202ENST00000377798 1868 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
RC3H1Q5TC82 GMPR2-204ENST00000420554 1864 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
RC3H1Q5TC82 GMPR2-223ENST00000559836 1893 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
RC3H1Q5TC82 NUS1-201ENST00000368494 4676 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
RC3H1Q5TC82 CTSB-228ENST00000533455 2009 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
RC3H1Q5TC82 SMO-201ENST00000249373 3738 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
RC3H1Q5TC82 CCHCR1-202ENST00000396263 2490 ntTSL 5 BASIC18.28■□□□□ 0.52
RC3H1Q5TC82 MIR137HG-202ENST00000424528 2639 ntTSL 2 BASIC18.28■□□□□ 0.52
RC3H1Q5TC82 CROCC2-201ENST00000443866 5382 ntAPPRIS P1 TSL 5 BASIC18.28■□□□□ 0.52
RC3H1Q5TC82 POLR3K-201ENST00000293860 1392 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
RC3H1Q5TC82 MS4A15-201ENST00000337911 1536 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
RC3H1Q5TC82 AC138761.4-201ENST00000578881 1514 ntTSL 3 BASIC18.28■□□□□ 0.52
RC3H1Q5TC82 ABI2-215ENST00000430418 1676 ntTSL 5 BASIC18.28■□□□□ 0.52
RC3H1Q5TC82 PROSER3-202ENST00000396908 2149 ntAPPRIS P5 TSL 1 (best) BASIC18.28■□□□□ 0.52
RC3H1Q5TC82 NBPF3-205ENST00000454000 2133 ntAPPRIS ALT2 TSL 2 BASIC18.28■□□□□ 0.52
RC3H1Q5TC82 KLC4-202ENST00000347162 2404 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
RC3H1Q5TC82 LRRC47-201ENST00000378251 4310 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
RC3H1Q5TC82 MAP2K7-202ENST00000397981 3430 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
RC3H1Q5TC82 EIF4H-202ENST00000353999 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC18.27■□□□□ 0.52
RC3H1Q5TC82 ZNF384-202ENST00000355772 2514 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
RC3H1Q5TC82 EBP-205ENST00000495186 1775 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
RC3H1Q5TC82 TTC39A-216ENST00000530004 1780 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
RC3H1Q5TC82 HTR3E-203ENST00000425359 1326 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.52
RC3H1Q5TC82 SEMA4C-201ENST00000305476 3545 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
RC3H1Q5TC82 CLEC18B-201ENST00000339953 1865 ntAPPRIS P2 TSL 1 (best) BASIC18.27■□□□□ 0.52
RC3H1Q5TC82 CLEC18C-202ENST00000536907 1865 ntAPPRIS ALT2 TSL 5 BASIC18.27■□□□□ 0.52
RC3H1Q5TC82 ZNF853-201ENST00000457543 3857 ntAPPRIS P1 TSL 3 BASIC18.27■□□□□ 0.52
RC3H1Q5TC82 KCTD18-202ENST00000409157 2556 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
RC3H1Q5TC82 MBD1-203ENST00000339998 2956 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.52
RC3H1Q5TC82 C11orf49-203ENST00000378618 1166 ntTSL 5 BASIC18.27■□□□□ 0.52
RC3H1Q5TC82 RNF144A-AS1-203ENST00000426122 579 ntTSL 4 BASIC18.27■□□□□ 0.52
RC3H1Q5TC82 RN7SL564P-201ENST00000496309 250 ntBASIC18.27■□□□□ 0.52
RC3H1Q5TC82 IGHV1-12-201ENST00000518307 205 ntBASIC18.27■□□□□ 0.52
RC3H1Q5TC82 AC009163.3-201ENST00000563554 852 ntTSL 3 BASIC18.27■□□□□ 0.52
RC3H1Q5TC82 ZNF677-204ENST00000594681 935 ntTSL 2 BASIC18.27■□□□□ 0.52
RC3H1Q5TC82 AC079325.2-201ENST00000641710 606 ntAPPRIS P5 BASIC18.27■□□□□ 0.52
RC3H1Q5TC82 SLC37A1-201ENST00000352133 3664 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
RC3H1Q5TC82 ZFP91-201ENST00000316059 5220 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
RC3H1Q5TC82 ZNF417-203ENST00000595559 1975 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.52
RC3H1Q5TC82 CELF3-201ENST00000290583 3246 ntAPPRIS P3 TSL 1 (best) BASIC18.27■□□□□ 0.52
RC3H1Q5TC82 PAPD5-202ENST00000436909 4635 ntAPPRIS P1 TSL 2 BASIC18.27■□□□□ 0.52
RC3H1Q5TC82 LINC01864-201ENST00000587218 1661 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
RC3H1Q5TC82 SLC5A6-203ENST00000408041 2230 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
RC3H1Q5TC82 TOM1L2-205ENST00000478943 2098 ntTSL 2 BASIC18.27■□□□□ 0.51
RC3H1Q5TC82 TM9SF1-201ENST00000261789 2452 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
RC3H1Q5TC82 COL26A1-201ENST00000313669 3033 ntAPPRIS P2 TSL 1 (best) BASIC18.27■□□□□ 0.51
RC3H1Q5TC82 UPK1A-203ENST00000616789 1366 ntTSL 5 BASIC18.27■□□□□ 0.51
RC3H1Q5TC82 REPS1-208ENST00000450536 4537 ntAPPRIS ALT1 TSL 1 (best) BASIC18.27■□□□□ 0.51
RC3H1Q5TC82 CDH24-204ENST00000487137 3438 ntAPPRIS P1 TSL 5 BASIC18.27■□□□□ 0.51
RC3H1Q5TC82 ZNF385A-201ENST00000338010 2331 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
RC3H1Q5TC82 SUOX-202ENST00000356124 2306 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
RC3H1Q5TC82 CD59-201ENST00000351554 1775 ntAPPRIS P2 TSL 2 BASIC18.27■□□□□ 0.51
RC3H1Q5TC82 PHTF1-201ENST00000357783 2747 ntTSL 1 (best) BASIC18.27■□□□□ 0.51
RC3H1Q5TC82 SLC1A4-201ENST00000234256 4561 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
RC3H1Q5TC82 ADPRHL1-201ENST00000356501 1877 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
RC3H1Q5TC82 LTBR-201ENST00000228918 2260 ntAPPRIS P3 TSL 1 (best) BASIC18.26■□□□□ 0.51
RC3H1Q5TC82 ZDHHC13-201ENST00000399351 2283 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
RC3H1Q5TC82 ENDOV-213ENST00000520367 2680 ntTSL 2 BASIC18.26■□□□□ 0.51
RC3H1Q5TC82 PAPOLB-201ENST00000404991 4262 ntAPPRIS P1 BASIC18.26■□□□□ 0.51
RC3H1Q5TC82 CD24-204ENST00000619133 2513 ntAPPRIS P3 TSL 2 BASIC18.26■□□□□ 0.51
RC3H1Q5TC82 HCG27-201ENST00000383331 1720 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
RC3H1Q5TC82 BTNL8-206ENST00000508408 1717 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
RC3H1Q5TC82 COQ3-201ENST00000254759 1335 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
RC3H1Q5TC82 FGFR3-208ENST00000481110 4217 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
RC3H1Q5TC82 PXYLP1-201ENST00000286353 3281 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
RC3H1Q5TC82 CYP20A1-203ENST00000429815 1812 ntTSL 2 BASIC18.26■□□□□ 0.51
RC3H1Q5TC82 DCP1B-201ENST00000280665 2086 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
RC3H1Q5TC82 FAM83G-202ENST00000388995 5266 ntAPPRIS P1 TSL 5 BASIC18.26■□□□□ 0.51
RC3H1Q5TC82 NUCB1-202ENST00000407032 2158 ntAPPRIS P2 TSL 5 BASIC18.26■□□□□ 0.51
RC3H1Q5TC82 TMEM95-201ENST00000330767 1169 ntAPPRIS P3 TSL 1 (best) BASIC18.26■□□□□ 0.51
RC3H1Q5TC82 HBB-201ENST00000335295 628 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
RC3H1Q5TC82 GSTT2-201ENST00000402588 937 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
RC3H1Q5TC82 LINC01022-201ENST00000415652 394 ntTSL 3 BASIC18.26■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 33.1 ms