RNA–Protein interactions for RNA: ENST00000357783.6

PHTF1-201, Transcript of putative homeodomain transcription factor 1, humanhuman

TSL 1 (best) BASIC

Gene PHTF1, Length 2,747 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHTF1-201ENST00000357783 NISCHQ9Y2I1 1504 aa33.76■■■□□ 2.99
PHTF1-201ENST00000357783 CCDC180Q9P1Z9 1646 aa28.92■■■□□ 2.22
PHTF1-201ENST00000357783 ZCCHC6Q5VYS8 1495 aaKnown RBP28.51■■■□□ 2.15
PHTF1-201ENST00000357783 SHROOM4Q9ULL8 1493 aa28.49■■■□□ 2.15
PHTF1-201ENST00000357783 DCAF8L2P0C7V8 631 aa27.99■■■□□ 2.07
PHTF1-201ENST00000357783 SUPT5HO00267 1087 aaKnown RBP27.78■■■□□ 2.04
PHTF1-201ENST00000357783 DCAF1Q9Y4B6 1507 aa27.72■■■□□ 2.03
PHTF1-201ENST00000357783 MYO15BQ96JP2 1530 aa27.04■■□□□ 1.92
PHTF1-201ENST00000357783 SCRIBQ14160 1630 aa27■■□□□ 1.91
PHTF1-201ENST00000357783 ABCC9O60706 1549 aa26.96■■□□□ 1.91
PHTF1-201ENST00000357783 CHIC1Q5VXU3 224 aa26.87■■□□□ 1.89
PHTF1-201ENST00000357783 NACADO15069 1562 aa26.77■■□□□ 1.88
PHTF1-201ENST00000357783 RSF1Q96T23 1441 aaPredicted RBP26.57■■□□□ 1.84
PHTF1-201ENST00000357783 RB1CC1Q8TDY2 1594 aa26.4■■□□□ 1.82
PHTF1-201ENST00000357783 CECR2Q9BXF3 1484 aa26.32■■□□□ 1.8
PHTF1-201ENST00000357783 MROH2BQ7Z745 1585 aa26.21■■□□□ 1.79
PHTF1-201ENST00000357783 WIZO95785 1651 aa26.08■■□□□ 1.77
PHTF1-201ENST00000357783 LOC105371045A0A1W2PR82 267 aa26.04■■□□□ 1.76
PHTF1-201ENST00000357783 UNC13AQ9UPW8 1703 aa26.03■■□□□ 1.76
PHTF1-201ENST00000357783 BAZ1AQ9NRL2 1556 aaPredicted RBP25.97■■□□□ 1.75
PHTF1-201ENST00000357783 TRIM41Q8WV44 630 aa25.92■■□□□ 1.74
PHTF1-201ENST00000357783 SMARCA4P51532 1647 aa25.8■■□□□ 1.72
PHTF1-201ENST00000357783 PCGF6Q9BYE7 350 aa25.71■■□□□ 1.71
PHTF1-201ENST00000357783 TOP2AP11388 1531 aaKnown RBP25.68■■□□□ 1.7
PHTF1-201ENST00000357783 PABPN1Q86U42 306 aaKnown RBP eCLIP25.68■■□□□ 1.7
PHTF1-201ENST00000357783 FAM9AQ8IZU1 332 aaPredicted RBP25.67■■□□□ 1.7
PHTF1-201ENST00000357783 BICRAQ9NZM4 1560 aa25.67■■□□□ 1.7
PHTF1-201ENST00000357783 EIF4G1Q04637 1599 aaKnown RBP25.61■■□□□ 1.69
PHTF1-201ENST00000357783 CCDC88BA6NC98 1476 aa25.53■■□□□ 1.68
PHTF1-201ENST00000357783 SMARCA2P51531 1590 aa25.53■■□□□ 1.68
PHTF1-201ENST00000357783 HRCP23327 699 aa25.5■■□□□ 1.67
PHTF1-201ENST00000357783 EHMT2Q96KQ7 1210 aa25.45■■□□□ 1.66
PHTF1-201ENST00000357783 ABCC8Q09428 1581 aa25.37■■□□□ 1.65
PHTF1-201ENST00000357783 PEG3Q9GZU2 1588 aa25.32■■□□□ 1.64
PHTF1-201ENST00000357783 TRIM26Q12899 539 aaPredicted RBP25.31■■□□□ 1.64
PHTF1-201ENST00000357783 ATAD2BQ9ULI0 1458 aa25.18■■□□□ 1.62
PHTF1-201ENST00000357783 BAZ1BQ9UIG0 1483 aaKnown RBP25.11■■□□□ 1.61
PHTF1-201ENST00000357783 SOGA1O94964 1423 aa25.04■■□□□ 1.6
PHTF1-201ENST00000357783 PPARGC1BQ86YN6 1023 aaKnown RBP25■■□□□ 1.59
PHTF1-201ENST00000357783 WRNQ14191 1432 aaPredicted RBP eCLIP24.98■■□□□ 1.59
PHTF1-201ENST00000357783 RUSC2Q8N2Y8 1516 aa24.93■■□□□ 1.58
PHTF1-201ENST00000357783 EEA1Q15075 1411 aa24.9■■□□□ 1.58
PHTF1-201ENST00000357783 SYNJ1O43426 1573 aa24.89■■□□□ 1.58
PHTF1-201ENST00000357783 CSRNP3Q8WYN3 585 aa24.86■■□□□ 1.57
PHTF1-201ENST00000357783 CEP162Q5TB80 1403 aa24.8■■□□□ 1.56
PHTF1-201ENST00000357783 TNIKQ9UKE5 1360 aa24.78■■□□□ 1.56
PHTF1-201ENST00000357783 HMGXB3Q12766 1538 aa24.75■■□□□ 1.55
PHTF1-201ENST00000357783 UBTFP17480 764 aaKnown RBP24.74■■□□□ 1.55
PHTF1-201ENST00000357783 NCAPD3P42695 1498 aa24.74■■□□□ 1.55
PHTF1-201ENST00000357783 GOLGA3Q08378 1498 aa24.72■■□□□ 1.55
PHTF1-201ENST00000357783 ZEB1P37275 1124 aaPredicted RBP24.62■■□□□ 1.53
PHTF1-201ENST00000357783 TOP2BQ02880 1626 aa24.62■■□□□ 1.53
PHTF1-201ENST00000357783 CEP164Q9UPV0 1460 aa24.61■■□□□ 1.53
PHTF1-201ENST00000357783 KIF21BO75037 1637 aa24.6■■□□□ 1.53
PHTF1-201ENST00000357783 TTBK1Q5TCY1 1321 aaPredicted RBP24.56■■□□□ 1.52
PHTF1-201ENST00000357783 BIVM-ERCC5R4GMW8 1640 aa24.56■■□□□ 1.52
PHTF1-201ENST00000357783 RAPGEF2Q9Y4G8 1499 aa24.47■■□□□ 1.51
PHTF1-201ENST00000357783 CFTRP13569 1480 aa24.46■■□□□ 1.51
PHTF1-201ENST00000357783 CUX1P39880 1505 aa24.44■■□□□ 1.5
PHTF1-201ENST00000357783 CLIP1P30622 1438 aa24.41■■□□□ 1.5
PHTF1-201ENST00000357783 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP24.36■■□□□ 1.49
PHTF1-201ENST00000357783 PRDM2Q13029 1718 aa24.34■■□□□ 1.49
PHTF1-201ENST00000357783 RANGAP1P46060 587 aaPredicted RBP24.31■■□□□ 1.48
PHTF1-201ENST00000357783 CC2D2AQ9P2K1 1620 aa24.31■■□□□ 1.48
PHTF1-201ENST00000357783 CCER1Q8TC90 406 aaPredicted RBP24.29■■□□□ 1.48
PHTF1-201ENST00000357783 VPS8Q8N3P4 1428 aa24.27■■□□□ 1.48
PHTF1-201ENST00000357783 PRXQ9BXM0 1461 aa24.26■■□□□ 1.47
PHTF1-201ENST00000357783 ERICH3Q5RHP9 1530 aa24.26■■□□□ 1.47
PHTF1-201ENST00000357783 KIF27Q86VH2 1401 aa24.24■■□□□ 1.47
PHTF1-201ENST00000357783 CADPSQ9ULU8 1353 aa24.24■■□□□ 1.47
PHTF1-201ENST00000357783 APLP2Q06481 763 aa24.13■■□□□ 1.45
PHTF1-201ENST00000357783 CUX2O14529 1486 aa24.08■■□□□ 1.44
PHTF1-201ENST00000357783 ARAP1Q96P48 1450 aa24.06■■□□□ 1.44
PHTF1-201ENST00000357783 FGD5Q6ZNL6 1462 aa24.05■■□□□ 1.44
PHTF1-201ENST00000357783 FANCD2Q9BXW9 1451 aa24.02■■□□□ 1.44
PHTF1-201ENST00000357783 HNRNPUL2Q1KMD3 747 aaKnown RBP23.99■■□□□ 1.43
PHTF1-201ENST00000357783 IGF1RP08069 1367 aa23.98■■□□□ 1.43
PHTF1-201ENST00000357783 NESP48681 1621 aa23.93■■□□□ 1.42
PHTF1-201ENST00000357783 ARHGAP35Q9NRY4 1499 aa23.9■■□□□ 1.42
PHTF1-201ENST00000357783 CARMIL1Q5VZK9 1371 aa23.88■■□□□ 1.41
PHTF1-201ENST00000357783 DNMBPQ6XZF7 1577 aa23.88■■□□□ 1.41
PHTF1-201ENST00000357783 KANK4Q5T7N3 995 aaPredicted RBP23.84■■□□□ 1.41
PHTF1-201ENST00000357783 TOPBP1Q92547 1522 aa23.84■■□□□ 1.41
PHTF1-201ENST00000357783 RAD54L2Q9Y4B4 1467 aa23.83■■□□□ 1.4
PHTF1-201ENST00000357783 POLA1P09884 1462 aaPredicted RBP23.8■■□□□ 1.4
PHTF1-201ENST00000357783 ABCA10Q8WWZ4 1543 aa23.76■■□□□ 1.39
PHTF1-201ENST00000357783 LAMC3Q9Y6N6 1575 aa23.76■■□□□ 1.39
PHTF1-201ENST00000357783 URB2Q14146 1524 aaKnown RBP23.69■■□□□ 1.38
PHTF1-201ENST00000357783 DNAJC5BQ9UF47 199 aa23.69■■□□□ 1.38
PHTF1-201ENST00000357783 RRBP1Q9P2E9 1410 aaKnown RBP23.64■■□□□ 1.38
PHTF1-201ENST00000357783 CUL7Q14999 1698 aa23.62■■□□□ 1.37
PHTF1-201ENST00000357783 DIEXFQ68CQ4 756 aaKnown RBP23.61■■□□□ 1.37
PHTF1-201ENST00000357783 WDR97A6NE52 1622 aa23.61■■□□□ 1.37
PHTF1-201ENST00000357783 TIAM1Q13009 1591 aa23.61■■□□□ 1.37
PHTF1-201ENST00000357783 PDS5BQ9NTI5 1447 aa23.6■■□□□ 1.37
PHTF1-201ENST00000357783 P3H3Q8IVL6 736 aa23.6■■□□□ 1.37
PHTF1-201ENST00000357783 CCNB3Q8WWL7 1395 aa23.57■■□□□ 1.36
PHTF1-201ENST00000357783 KIF21AQ7Z4S6 1674 aa23.57■■□□□ 1.36
PHTF1-201ENST00000357783 MAP3K1Q13233 1512 aa23.56■■□□□ 1.36
PHTF1-201ENST00000357783 FHAD1B1AJZ9 1412 aa23.55■■□□□ 1.36
Retrieved 100 of 20,778 RNA–protein pairs in 11.3 ms