Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 MTHFR-210ENST00000641407 2387 ntBASIC14.05□□□□□ -0.16
RFX3P48380 EPHA2-201ENST00000358432 3964 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
RFX3P48380 GALNTL6-205ENST00000511251 2905 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
RFX3P48380 SH3PXD2B-201ENST00000311601 7777 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
RFX3P48380 GOLGA6L2-201ENST00000312015 1379 ntAPPRIS ALT2 TSL 2 BASIC14.05□□□□□ -0.16
RFX3P48380 FKBP9-214ENST00000538336 3621 ntTSL 2 BASIC14.05□□□□□ -0.16
RFX3P48380 NFATC1-218ENST00000592223 2531 ntAPPRIS ALT2 TSL 1 (best) BASIC14.05□□□□□ -0.16
RFX3P48380 CCHCR1-208ENST00000451521 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC14.05□□□□□ -0.16
RFX3P48380 ANO10-213ENST00000451430 2019 ntTSL 2 BASIC14.05□□□□□ -0.16
RFX3P48380 NRP2-204ENST00000360409 6662 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
RFX3P48380 ALDH7A1-201ENST00000409134 4964 ntAPPRIS P2 TSL 1 (best) BASIC14.05□□□□□ -0.16
RFX3P48380 IKZF1-218ENST00000615491 5637 ntTSL 5 BASIC14.05□□□□□ -0.16
RFX3P48380 MKL1-202ENST00000396617 4505 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
RFX3P48380 TEKT2-201ENST00000207457 1509 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
RFX3P48380 MAPKAPK5-206ENST00000550735 11349 ntAPPRIS ALT1 TSL 1 (best) BASIC14.05□□□□□ -0.16
RFX3P48380 ZBTB17-201ENST00000375733 2770 ntAPPRIS ALT2 TSL 1 (best) BASIC14.05□□□□□ -0.16
RFX3P48380 DSE-202ENST00000359564 4037 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
RFX3P48380 ZBED1-201ENST00000381218 2832 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
RFX3P48380 WASH2P-202ENST00000538033 2800 ntTSL 2 BASIC14.05□□□□□ -0.16
RFX3P48380 VGLL4-202ENST00000413604 1554 ntTSL 2 BASIC14.05□□□□□ -0.16
RFX3P48380 RAPGEF1-202ENST00000372190 6045 ntAPPRIS P4 TSL 1 (best) BASIC14.05□□□□□ -0.16
RFX3P48380 SLC26A11-202ENST00000411502 2872 ntAPPRIS P1 TSL 2 BASIC14.05□□□□□ -0.16
RFX3P48380 DNAJC27-207ENST00000534855 4831 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
RFX3P48380 DUSP27-201ENST00000271385 3597 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
RFX3P48380 PLAGL1-201ENST00000354765 3663 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
RFX3P48380 SLC52A3-202ENST00000381944 3060 ntTSL 2 BASIC14.04□□□□□ -0.16
RFX3P48380 C19orf57-201ENST00000346736 2489 ntAPPRIS P2 TSL 2 BASIC14.04□□□□□ -0.16
RFX3P48380 AC055811.4-201ENST00000624039 1754 ntBASIC14.04□□□□□ -0.16
RFX3P48380 PLCB3-202ENST00000325234 3946 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
RFX3P48380 PPP2R1A-201ENST00000322088 5380 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
RFX3P48380 ANKRD13B-201ENST00000394859 3214 ntAPPRIS P1 TSL 2 BASIC14.04□□□□□ -0.16
RFX3P48380 AMT-202ENST00000395338 1831 ntAPPRIS ALT1 TSL 1 (best) BASIC14.04□□□□□ -0.16
RFX3P48380 VRK3-207ENST00000594092 1831 ntAPPRIS ALT2 TSL 1 (best) BASIC14.04□□□□□ -0.16
RFX3P48380 SPIRE1-201ENST00000309836 1877 ntTSL 2 BASIC14.04□□□□□ -0.16
RFX3P48380 NEIL2-201ENST00000284503 2671 ntAPPRIS P1 TSL 2 BASIC14.04□□□□□ -0.16
RFX3P48380 TSEN2-205ENST00000444864 2697 ntTSL 2 BASIC14.04□□□□□ -0.16
RFX3P48380 TRIP10-208ENST00000596758 1920 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
RFX3P48380 IKZF1-202ENST00000343574 5925 ntTSL 5 BASIC14.04□□□□□ -0.16
RFX3P48380 NYAP1-201ENST00000300179 3581 ntAPPRIS P1 TSL 2 BASIC14.04□□□□□ -0.16
RFX3P48380 SUPT20H-212ENST00000475892 2836 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
RFX3P48380 ARC-201ENST00000356613 2948 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
RFX3P48380 VCX2-201ENST00000317103 815 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
RFX3P48380 SPOCK3-201ENST00000357154 2986 ntAPPRIS ALT2 TSL 5 BASIC14.04□□□□□ -0.16
RFX3P48380 NSL1-201ENST00000366976 722 ntTSL 2 BASIC14.04□□□□□ -0.16
RFX3P48380 MPV17-203ENST00000380044 1005 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
RFX3P48380 ADAMTSL1-208ENST00000380570 931 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
RFX3P48380 HOPX-203ENST00000381255 1164 ntAPPRIS P1 TSL 2 BASIC14.04□□□□□ -0.16
RFX3P48380 LENEP-202ENST00000392487 555 ntAPPRIS P1 BASIC14.04□□□□□ -0.16
RFX3P48380 AL645937.2-201ENST00000396808 931 ntBASIC14.04□□□□□ -0.16
RFX3P48380 RHOG-203ENST00000396979 1289 ntAPPRIS P1 TSL 3 BASIC14.04□□□□□ -0.16
RFX3P48380 TCF20-203ENST00000404876 1058 ntTSL 3 BASIC14.04□□□□□ -0.16
RFX3P48380 MPV17-208ENST00000405076 603 ntTSL 5 BASIC14.04□□□□□ -0.16
RFX3P48380 AL139094.1-201ENST00000405549 1188 ntBASIC14.04□□□□□ -0.16
RFX3P48380 LINC00824-206ENST00000523173 920 ntTSL 2 BASIC14.04□□□□□ -0.16
RFX3P48380 AC090735.1-201ENST00000523881 488 ntTSL 4 BASIC14.04□□□□□ -0.16
RFX3P48380 RHOG-204ENST00000533217 886 ntAPPRIS P1 TSL 5 BASIC14.04□□□□□ -0.16
RFX3P48380 HOPX-210ENST00000553379 1001 ntAPPRIS P1 TSL 2 BASIC14.04□□□□□ -0.16
RFX3P48380 HOPX-212ENST00000555760 1139 ntAPPRIS P1 TSL 3 BASIC14.04□□□□□ -0.16
RFX3P48380 HOPX-213ENST00000556376 1064 ntAPPRIS P1 TSL 3 BASIC14.04□□□□□ -0.16
RFX3P48380 AP001063.1-201ENST00000568332 529 ntBASIC14.04□□□□□ -0.16
RFX3P48380 AC111170.2-201ENST00000585369 768 ntTSL 3 BASIC14.04□□□□□ -0.16
RFX3P48380 RBP1-207ENST00000619087 516 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
RFX3P48380 AC006449.3-201ENST00000620144 563 ntTSL 4 BASIC14.04□□□□□ -0.16
RFX3P48380 VCX-203ENST00000620630 812 ntAPPRIS ALT2 TSL 5 BASIC14.04□□□□□ -0.16
RFX3P48380 ABBA01031660.1-201ENST00000635219 756 ntBASIC14.04□□□□□ -0.16
RFX3P48380 FAM214B-202ENST00000378557 3070 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
RFX3P48380 ASTN2-206ENST00000361477 4001 ntTSL 5 BASIC14.04□□□□□ -0.16
RFX3P48380 AP1B1-208ENST00000432560 4146 ntAPPRIS P1 TSL 5 BASIC14.04□□□□□ -0.16
RFX3P48380 CAMK2B-217ENST00000457475 4142 ntTSL 5 BASIC14.04□□□□□ -0.16
RFX3P48380 SLC25A3-217ENST00000552981 1351 ntAPPRIS ALT1 TSL 1 (best) BASIC14.04□□□□□ -0.16
RFX3P48380 SHTN1-204ENST00000392903 2400 ntAPPRIS ALT2 TSL 1 (best) BASIC14.04□□□□□ -0.16
RFX3P48380 KLHDC3-203ENST00000332245 1494 ntTSL 2 BASIC14.04□□□□□ -0.16
RFX3P48380 CATSPER2P1-203ENST00000429276 1466 ntTSL 2 BASIC14.04□□□□□ -0.16
RFX3P48380 AMT-204ENST00000427987 1646 ntTSL 5 BASIC14.04□□□□□ -0.16
RFX3P48380 AMPD2-218ENST00000528454 2728 ntTSL 2 BASIC14.04□□□□□ -0.16
RFX3P48380 FGFR1-201ENST00000326324 3816 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
RFX3P48380 SLC43A2-202ENST00000412517 1658 ntTSL 2 BASIC14.04□□□□□ -0.16
RFX3P48380 ITSN1-210ENST00000399353 3913 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
RFX3P48380 KLF4-201ENST00000374672 2813 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
RFX3P48380 SRSF5-203ENST00000553521 2815 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
RFX3P48380 MSTO2P-201ENST00000314835 1709 ntBASIC14.04□□□□□ -0.16
RFX3P48380 MOCS1-205ENST00000373195 2852 ntTSL 2 BASIC14.04□□□□□ -0.16
RFX3P48380 DTX4-204ENST00000532982 1708 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
RFX3P48380 SLC35A3-209ENST00000638338 2890 ntTSL 5 BASIC14.04□□□□□ -0.16
RFX3P48380 LINC00667-206ENST00000582363 2935 ntTSL 2 BASIC14.04□□□□□ -0.16
RFX3P48380 ADPRHL1-201ENST00000356501 1877 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
RFX3P48380 PIK3R5-219ENST00000616147 4377 ntTSL 5 BASIC14.04□□□□□ -0.16
RFX3P48380 ZNF485-201ENST00000361807 2054 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
RFX3P48380 ZNF84-215ENST00000543758 3501 ntAPPRIS ALT2 TSL 5 BASIC14.03□□□□□ -0.16
RFX3P48380 ST3GAL3-208ENST00000361392 2243 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
RFX3P48380 PARP1-203ENST00000366794 3958 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
RFX3P48380 ANKRD18A-201ENST00000399703 4041 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
RFX3P48380 PDGFRB-201ENST00000261799 5717 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
RFX3P48380 HTR7-202ENST00000336152 3126 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
RFX3P48380 TFE3-201ENST00000315869 3415 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
RFX3P48380 NEK9-201ENST00000238616 8310 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
RFX3P48380 EML4-203ENST00000402711 3568 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
RFX3P48380 RPS15-201ENST00000233609 534 ntTSL 2 BASIC14.03□□□□□ -0.16
RFX3P48380 APOA1-201ENST00000236850 1227 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
RFX3P48380 LINC01116-202ENST00000339037 838 ntTSL 3 BASIC14.03□□□□□ -0.16
Retrieved 100 of 98,524 protein–RNA pairs in 55.9 ms