Protein–RNA interactions for Protein: P16989

YBX3, Y-box-binding protein 3, humanhuman

Known RBP eCLIP

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3P16989 STX3-202ENST00000528805 615 ntTSL 1 (best)8.1□□□□□ -1.114e-9■□□□□ 9.2
YBX3P16989 ZNHIT3-201ENST00000612494 494 ntTSL 37.33□□□□□ -1.244e-9■□□□□ 9.2
YBX3P16989 ZNHIT3-211ENST00000622013 505 ntTSL 36.68□□□□□ -1.344e-9■□□□□ 9.2
YBX3P16989 STIP1-205ENST00000537479 601 ntTSL 26.27□□□□□ -1.414e-9■□□□□ 9.2
YBX3P16989 STIP1-206ENST00000538497 582 ntTSL 26.27□□□□□ -1.414e-9■□□□□ 9.2
YBX3P16989 ZNHIT3-205ENST00000617922 4420 ntTSL 26.2□□□□□ -1.424e-9■□□□□ 9.2
YBX3P16989 STIP1-212ENST00000544739 562 ntTSL 35.37□□□□□ -1.554e-9■□□□□ 9.2
YBX3P16989 PTBP3-203ENST00000343327 2755 ntTSL 2 BASIC9.47□□□□□ -0.893e-7■□□□□ 9.2
YBX3P16989 PTBP3-205ENST00000374257 7240 ntAPPRIS ALT1 TSL 2 BASIC9.07□□□□□ -0.963e-7■□□□□ 9.2
YBX3P16989 PTBP3-204ENST00000374255 3413 ntAPPRIS P3 TSL 5 BASIC8.3□□□□□ -1.083e-7■□□□□ 9.2
YBX3P16989 PTBP3-202ENST00000334318 7990 ntAPPRIS ALT1 TSL 1 (best) BASIC6.85□□□□□ -1.313e-7■□□□□ 9.2
YBX3P16989 PTBP3-207ENST00000458258 7995 ntTSL 1 (best) BASIC6.55□□□□□ -1.363e-7■□□□□ 9.2
YBX3P16989 UBR4-213ENST00000483922 543 ntTSL 518.34■□□□□ 0.539e-9■□□□□ 9.2
YBX3P16989 UBR4-211ENST00000467272 891 ntTSL 517.31■□□□□ 0.369e-9■□□□□ 9.2
YBX3P16989 ARMC1-205ENST00000523384 507 ntTSL 328.56■■■□□ 2.169e-9■□□□□ 9.2
YBX3P16989 ARMC1-204ENST00000519352 686 ntTSL 227.17■■□□□ 1.949e-9■□□□□ 9.2
YBX3P16989 ARMC1-203ENST00000518908 1050 ntTSL 324.71■■□□□ 1.559e-9■□□□□ 9.2
YBX3P16989 ARMC1-206ENST00000528721 887 ntTSL 222.98■■□□□ 1.279e-9■□□□□ 9.2
YBX3P16989 TRIM28-204ENST00000594806 861 ntTSL 532.85■■■□□ 2.856e-20■□□□□ 9.2
YBX3P16989 TRIM28-203ENST00000593582 533 ntTSL 320.21■□□□□ 0.836e-20■□□□□ 9.2
YBX3P16989 CAV2-201ENST00000222693 3301 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.824e-9■□□□□ 9.2
YBX3P16989 AP1B1-206ENST00000415756 519 ntTSL 318.7■□□□□ 0.584e-9■□□□□ 9.2
YBX3P16989 CAV2-202ENST00000343213 776 ntTSL 1 (best) BASIC16.93■□□□□ 0.34e-9■□□□□ 9.2
YBX3P16989 CAV2-214ENST00000495841 787 ntTSL 215.55■□□□□ 0.084e-9■□□□□ 9.2
YBX3P16989 DENND1A-207ENST00000474676 603 ntTSL 512.92□□□□□ -0.344e-9■□□□□ 9.2
YBX3P16989 CAV2-205ENST00000462876 1861 ntTSL 1 (best)10.88□□□□□ -0.674e-9■□□□□ 9.2
YBX3P16989 CAV2-211ENST00000484871 971 ntTSL 1 (best)10.34□□□□□ -0.754e-9■□□□□ 9.2
YBX3P16989 CAV2-215ENST00000498493 1561 ntTSL 59.95□□□□□ -0.824e-9■□□□□ 9.2
YBX3P16989 TMX2-203ENST00000524972 696 ntTSL 39.68□□□□□ -0.864e-9■□□□□ 9.2
YBX3P16989 CAV2-209ENST00000477018 1119 ntTSL 1 (best)9.49□□□□□ -0.894e-9■□□□□ 9.2
YBX3P16989 CAV2-207ENST00000467035 1200 ntTSL 1 (best)9.26□□□□□ -0.934e-9■□□□□ 9.2
YBX3P16989 CAV2-208ENST00000472470 857 ntTSL 1 (best)8.76□□□□□ -1.014e-9■□□□□ 9.2
YBX3P16989 CAV2-212ENST00000485561 577 ntTSL 1 (best)8.76□□□□□ -1.014e-9■□□□□ 9.2
YBX3P16989 TOP2B-207ENST00000491510 584 ntTSL 48.27□□□□□ -1.094e-9■□□□□ 9.2
YBX3P16989 TMX2-204ENST00000525035 703 ntTSL 37.4□□□□□ -1.224e-9■□□□□ 9.2
YBX3P16989 ETFA-209ENST00000559758 893 ntTSL 28.05□□□□□ -1.122e-9■□□□□ 9.2
YBX3P16989 SNCG-201ENST00000348795 684 ntTSL 2 BASIC21.41■■□□□ 1.022e-7■□□□□ 9.2
YBX3P16989 SNCG-203ENST00000465679 641 ntTSL 218.18■□□□□ 0.52e-7■□□□□ 9.2
YBX3P16989 SNCG-202ENST00000372017 701 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.182e-7■□□□□ 9.2
YBX3P16989 PIGT-240ENST00000639239 505 ntTSL 217.88■□□□□ 0.458e-9■□□□□ 9.2
YBX3P16989 PIGT-266ENST00000640649 536 ntTSL 214.16□□□□□ -0.148e-9■□□□□ 9.2
YBX3P16989 ASH2L-210ENST00000524247 575 ntTSL 53.99□□□□□ -1.773e-16■□□□□ 9.2
YBX3P16989 NUP214-214ENST00000525561 487 ntTSL 48.99□□□□□ -0.973e-40■□□□□ 9.2
YBX3P16989 DHRS2-205ENST00000553896 1352 ntTSL 1 (best)25.36■■□□□ 1.653e-6■□□□□ 9.2
YBX3P16989 NDUFB11-202ENST00000377811 1388 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.627e-15■□□□□ 9.2
YBX3P16989 NDUFB11-201ENST00000276062 948 ntTSL 1 (best) BASIC16.47■□□□□ 0.237e-15■□□□□ 9.2
YBX3P16989 YWHAH-206ENST00000479649 662 ntTSL 315.23■□□□□ 0.037e-11■□□□□ 9.2
YBX3P16989 AES-208ENST00000587083 458 ntTSL 217.08■□□□□ 0.327e-15■□□□□ 9.2
YBX3P16989 CERS2-207ENST00000457392 545 ntTSL 331.24■■■□□ 2.596e-10■□□□□ 9.1
YBX3P16989 USP20-204ENST00000472108 1811 ntTSL 218.83■□□□□ 0.68e-8■□□□□ 9.1
YBX3P16989 USP20-209ENST00000496927 646 ntTSL 515.95■□□□□ 0.148e-8■□□□□ 9.1
YBX3P16989 DCTN2-218ENST00000550954 892 ntTSL 513.51□□□□□ -0.258e-7■□□□□ 9.1
YBX3P16989 DCTN2-204ENST00000546670 580 ntTSL 37.69□□□□□ -1.188e-7■□□□□ 9.1
YBX3P16989 TMOD1-202ENST00000375175 2516 ntTSL 2 BASIC13.38□□□□□ -0.272e-6■□□□□ 9.1
YBX3P16989 HM13-202ENST00000340852 1606 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.863e-7■□□□□ 9.1
YBX3P16989 HM13-203ENST00000344042 847 ntTSL 518.53■□□□□ 0.563e-7■□□□□ 9.1
YBX3P16989 HM13-205ENST00000460225 443 ntTSL 518.33■□□□□ 0.523e-7■□□□□ 9.1
YBX3P16989 HM13-201ENST00000335574 1809 ntTSL 1 (best) BASIC16.42■□□□□ 0.223e-7■□□□□ 9.1
YBX3P16989 HM13-223ENST00000496438 699 ntTSL 515.28■□□□□ 0.043e-7■□□□□ 9.1
YBX3P16989 HM13-204ENST00000398174 3792 ntTSL 1 (best) BASIC11.08□□□□□ -0.633e-7■□□□□ 9.1
YBX3P16989 HUWE1-215ENST00000622887 688 ntTSL 530.46■■■□□ 2.471e-13■□□□□ 9.1
YBX3P16989 NAP1L1-222ENST00000551992 1074 ntTSL 531.55■■■□□ 2.642e-16■□□□□ 9.1
YBX3P16989 SHMT2-206ENST00000553529 562 ntTSL 424.47■■□□□ 1.519e-9■□□□□ 9.1
YBX3P16989 SHMT2-208ENST00000553868 941 ntTSL 220.06■□□□□ 0.89e-9■□□□□ 9.1
YBX3P16989 SHMT2-204ENST00000553324 566 ntTSL 419.97■□□□□ 0.799e-9■□□□□ 9.1
YBX3P16989 SHMT2-235ENST00000557740 569 ntTSL 419.81■□□□□ 0.769e-9■□□□□ 9.1
YBX3P16989 SHMT2-230ENST00000557427 569 ntTSL 418.05■□□□□ 0.489e-9■□□□□ 9.1
YBX3P16989 SHMT2-234ENST00000557703 542 ntTSL 417.23■□□□□ 0.359e-9■□□□□ 9.1
YBX3P16989 SHMT2-211ENST00000554310 579 ntTSL 417.12■□□□□ 0.339e-9■□□□□ 9.1
YBX3P16989 SHMT2-216ENST00000554975 780 ntTSL 315.48■□□□□ 0.079e-9■□□□□ 9.1
YBX3P16989 SHMT2-221ENST00000555773 600 ntTSL 215.27■□□□□ 0.049e-9■□□□□ 9.1
YBX3P16989 SHMT2-209ENST00000553949 552 ntTSL 315.2■□□□□ 0.029e-9■□□□□ 9.1
YBX3P16989 SHMT2-215ENST00000554656 817 ntTSL 314.56□□□□□ -0.089e-9■□□□□ 9.1
YBX3P16989 SHMT2-213ENST00000554600 837 ntTSL 213.97□□□□□ -0.179e-9■□□□□ 9.1
YBX3P16989 TNIP1-210ENST00000521423 926 ntTSL 513.75□□□□□ -0.219e-8■□□□□ 9.1
YBX3P16989 SHMT2-224ENST00000556737 572 ntTSL 213.74□□□□□ -0.219e-9■□□□□ 9.1
YBX3P16989 SHMT2-218ENST00000555213 611 ntTSL 313.63□□□□□ -0.239e-9■□□□□ 9.1
YBX3P16989 SNAP23-223ENST00000627440 210 ntTSL 5 BASIC10.95□□□□□ -0.669e-9■□□□□ 9.1
YBX3P16989 SNAP23-222ENST00000626061 237 ntTSL 5 BASIC10.95□□□□□ -0.669e-9■□□□□ 9.1
YBX3P16989 AL035458.2-201ENST00000512005 478 ntTSL 3 BASIC9.96□□□□□ -0.829e-9■□□□□ 9.1
YBX3P16989 SNAP23-206ENST00000563451 595 ntTSL 36.82□□□□□ -1.329e-9■□□□□ 9.1
YBX3P16989 SNAP23-215ENST00000568227 599 ntTSL 45.36□□□□□ -1.559e-9■□□□□ 9.1
YBX3P16989 SNAP23-219ENST00000568745 814 ntTSL 54.81□□□□□ -1.649e-9■□□□□ 9.1
YBX3P16989 ATF7IP-223ENST00000545723 577 ntTSL 419.32■□□□□ 0.682e-9■□□□□ 9.1
YBX3P16989 ATF7IP-211ENST00000538511 558 ntTSL 418.49■□□□□ 0.552e-9■□□□□ 9.1
YBX3P16989 ATF7IP-202ENST00000396279 1727 ntTSL 1 (best)9.8□□□□□ -0.842e-9■□□□□ 9.1
YBX3P16989 AP1M1-209ENST00000589991 625 ntTSL 220.98■□□□□ 0.951e-8■□□□□ 9.1
YBX3P16989 AP1M1-210ENST00000590263 546 ntTSL 519.73■□□□□ 0.751e-8■□□□□ 9.1
YBX3P16989 AP1M1-208ENST00000589822 562 ntTSL 417.32■□□□□ 0.361e-8■□□□□ 9.1
YBX3P16989 AP1M1-213ENST00000591775 564 ntTSL 414.44□□□□□ -0.11e-8■□□□□ 9.1
YBX3P16989 AP1M1-207ENST00000589782 436 ntTSL 513.1□□□□□ -0.311e-8■□□□□ 9.1
YBX3P16989 SEPT2-244ENST00000495463 501 ntTSL 435.7■■■■□ 3.313e-8■□□□□ 9.1
YBX3P16989 SEPT2-234ENST00000475474 749 ntTSL 233.91■■■■□ 3.023e-8■□□□□ 9.1
YBX3P16989 SEPT2-227ENST00000462147 576 ntTSL 432.75■■■□□ 2.833e-8■□□□□ 9.1
YBX3P16989 SEPT2-238ENST00000482304 740 ntTSL 232.63■■■□□ 2.813e-8■□□□□ 9.1
YBX3P16989 SEPT2-229ENST00000466211 584 ntTSL 331.89■■■□□ 2.73e-8■□□□□ 9.1
YBX3P16989 SEPT2-216ENST00000434955 480 ntTSL 331.6■■■□□ 2.653e-8■□□□□ 9.1
YBX3P16989 SEPT2-217ENST00000436795 775 ntTSL 530.7■■■□□ 2.513e-8■□□□□ 9.1
YBX3P16989 SEPT2-209ENST00000411484 561 ntTSL 430.31■■■□□ 2.443e-8■□□□□ 9.1
YBX3P16989 SEPT2-243ENST00000494824 565 ntTSL 530■■■□□ 2.393e-8■□□□□ 9.1
Retrieved 100 of 29,075 protein–RNA pairs in 106.6 ms