RNA–Protein interactions for RNA: ENST00000483922.1

UBR4-213, Transcript of ubiquitin protein ligase E3 component n-recognin 4, humanhuman

TSL 5

Gene UBR4, Length 543 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR4-213ENST00000483922 NISCHQ9Y2I1 1504 aa32.97■■■□□ 2.87
UBR4-213ENST00000483922 ABCC9O60706 1549 aa30.04■■■□□ 2.4
UBR4-213ENST00000483922 CCDC180Q9P1Z9 1646 aa29.59■■■□□ 2.33
UBR4-213ENST00000483922 DNAJC5BQ9UF47 199 aa28.66■■■□□ 2.18
UBR4-213ENST00000483922 RB1CC1Q8TDY2 1594 aa28.33■■■□□ 2.13
UBR4-213ENST00000483922 NACADO15069 1562 aa28.09■■■□□ 2.09
UBR4-213ENST00000483922 PABPN1Q86U42 306 aaKnown RBP eCLIP27.99■■■□□ 2.071e-7■■■■□ 20.9
UBR4-213ENST00000483922 DCAF8L2P0C7V8 631 aa27.98■■■□□ 2.07
UBR4-213ENST00000483922 UNC13AQ9UPW8 1703 aa27.77■■■□□ 2.04
UBR4-213ENST00000483922 BICRAQ9NZM4 1560 aa27.68■■■□□ 2.02
UBR4-213ENST00000483922 MYO15BQ96JP2 1530 aa27.62■■■□□ 2.01
UBR4-213ENST00000483922 ZCCHC6Q5VYS8 1495 aaKnown RBP27.23■■□□□ 1.95
UBR4-213ENST00000483922 DCAF1Q9Y4B6 1507 aa27.16■■□□□ 1.94
UBR4-213ENST00000483922 CC2D2AQ9P2K1 1620 aa27.08■■□□□ 1.93
UBR4-213ENST00000483922 SHROOM4Q9ULL8 1493 aa27.06■■□□□ 1.92
UBR4-213ENST00000483922 CECR2Q9BXF3 1484 aa27.06■■□□□ 1.92
UBR4-213ENST00000483922 SCRIBQ14160 1630 aa27.02■■□□□ 1.92
UBR4-213ENST00000483922 EIF4G1Q04637 1599 aaKnown RBP26.94■■□□□ 1.9
UBR4-213ENST00000483922 DNAJC5Q9H3Z4 198 aa26.4■■□□□ 1.82
UBR4-213ENST00000483922 NCAPD3P42695 1498 aa26.02■■□□□ 1.76
UBR4-213ENST00000483922 CUX2O14529 1486 aa25.91■■□□□ 1.74
UBR4-213ENST00000483922 ATAD2BQ9ULI0 1458 aa25.91■■□□□ 1.74
UBR4-213ENST00000483922 ERCC6Q03468 1493 aa25.84■■□□□ 1.73
UBR4-213ENST00000483922 NESP48681 1621 aa25.77■■□□□ 1.72
UBR4-213ENST00000483922 SMARCA4P51532 1647 aa25.74■■□□□ 1.71
UBR4-213ENST00000483922 HMGXB3Q12766 1538 aa25.71■■□□□ 1.71
UBR4-213ENST00000483922 SMARCA2P51531 1590 aa25.69■■□□□ 1.7
UBR4-213ENST00000483922 BAZ1BQ9UIG0 1483 aaKnown RBP25.55■■□□□ 1.68
UBR4-213ENST00000483922 BAZ1AQ9NRL2 1556 aaPredicted RBP25.53■■□□□ 1.68
UBR4-213ENST00000483922 PEG3Q9GZU2 1588 aa25.5■■□□□ 1.67
UBR4-213ENST00000483922 THOC2Q8NI27 1593 aaKnown RBP25.48■■□□□ 1.67
UBR4-213ENST00000483922 MROH2BQ7Z745 1585 aa25.45■■□□□ 1.66
UBR4-213ENST00000483922 LAMC3Q9Y6N6 1575 aa25.39■■□□□ 1.65
UBR4-213ENST00000483922 KIF21AQ7Z4S6 1674 aa25.32■■□□□ 1.64
UBR4-213ENST00000483922 PDS5BQ9NTI5 1447 aa25.27■■□□□ 1.64
UBR4-213ENST00000483922 CADPSQ9ULU8 1353 aa25.2■■□□□ 1.63
UBR4-213ENST00000483922 WIZO95785 1651 aa25.1■■□□□ 1.61
UBR4-213ENST00000483922 MRC2Q9UBG0 1479 aa25.08■■□□□ 1.6
UBR4-213ENST00000483922 TRIM41Q8WV44 630 aa25.06■■□□□ 1.6
UBR4-213ENST00000483922 WDR62O43379 1518 aa25.04■■□□□ 1.6
UBR4-213ENST00000483922 CEP164Q9UPV0 1460 aa24.89■■□□□ 1.58
UBR4-213ENST00000483922 FANCD2Q9BXW9 1451 aa24.89■■□□□ 1.57
UBR4-213ENST00000483922 CFTRP13569 1480 aa24.85■■□□□ 1.57
UBR4-213ENST00000483922 RSF1Q96T23 1441 aaPredicted RBP24.8■■□□□ 1.56
UBR4-213ENST00000483922 URB2Q14146 1524 aaKnown RBP24.76■■□□□ 1.55
UBR4-213ENST00000483922 OSCARQ8IYS5 282 aa24.75■■□□□ 1.55
UBR4-213ENST00000483922 TOP2AP11388 1531 aaKnown RBP24.69■■□□□ 1.54
UBR4-213ENST00000483922 ZNF608Q9ULD9 1512 aaPredicted RBP24.54■■□□□ 1.52
UBR4-213ENST00000483922 CCDC88BA6NC98 1476 aa24.51■■□□□ 1.51
UBR4-213ENST00000483922 RIMBP3CA6NJZ7 1639 aa24.45■■□□□ 1.5
UBR4-213ENST00000483922 RIMBP3BA6NNM3 1639 aa24.45■■□□□ 1.5
UBR4-213ENST00000483922 RIMBP3Q9UFD9 1639 aa24.45■■□□□ 1.5
UBR4-213ENST00000483922 PRDM2Q13029 1718 aa24.43■■□□□ 1.5
UBR4-213ENST00000483922 IFT140Q96RY7 1462 aa24.43■■□□□ 1.5
UBR4-213ENST00000483922 TOPBP1Q92547 1522 aa24.4■■□□□ 1.5
UBR4-213ENST00000483922 ARHGEF11O15085 1522 aa24.34■■□□□ 1.49
UBR4-213ENST00000483922 AQRO60306 1485 aaKnown RBP eCLIP24.27■■□□□ 1.482e-7■■■■■ 34.6
UBR4-213ENST00000483922 EIF4G3O43432 1585 aaKnown RBP24.27■■□□□ 1.48
UBR4-213ENST00000483922 CYB5RLQ6IPT4 315 aa24.24■■□□□ 1.47
UBR4-213ENST00000483922 DNMBPQ6XZF7 1577 aa24.24■■□□□ 1.47
UBR4-213ENST00000483922 ABCC8Q09428 1581 aa24.23■■□□□ 1.47
UBR4-213ENST00000483922 TARBP1Q13395 1621 aaKnown RBP24.23■■□□□ 1.47
UBR4-213ENST00000483922 POLA1P09884 1462 aaPredicted RBP24.14■■□□□ 1.46
UBR4-213ENST00000483922 CHD1O14646 1710 aa24.14■■□□□ 1.45
UBR4-213ENST00000483922 ARAP1Q96P48 1450 aa24.12■■□□□ 1.45
UBR4-213ENST00000483922 RAD54L2Q9Y4B4 1467 aa24.12■■□□□ 1.45
UBR4-213ENST00000483922 FBLN2P98095 1184 aa24.11■■□□□ 1.45
UBR4-213ENST00000483922 TDRD9Q8NDG6 1382 aaKnown RBP24.07■■□□□ 1.44
UBR4-213ENST00000483922 SOGA1O94964 1423 aa24.03■■□□□ 1.44
UBR4-213ENST00000483922 TRHP20396 242 aaPredicted RBP23.99■■□□□ 1.43
UBR4-213ENST00000483922 SNAPC4Q5SXM2 1469 aa23.94■■□□□ 1.42
UBR4-213ENST00000483922 FGD5Q6ZNL6 1462 aa23.94■■□□□ 1.42
UBR4-213ENST00000483922 CLASP1Q7Z460 1538 aa23.91■■□□□ 1.42
UBR4-213ENST00000483922 CUX1P39880 1505 aa23.89■■□□□ 1.42
UBR4-213ENST00000483922 CHMP7Q8WUX9 453 aaPredicted RBP23.86■■□□□ 1.41
UBR4-213ENST00000483922 WDR97A6NE52 1622 aa23.81■■□□□ 1.4
UBR4-213ENST00000483922 GRIN2BQ13224 1484 aa23.81■■□□□ 1.4
UBR4-213ENST00000483922 MAGI1Q96QZ7 1491 aaPredicted RBP23.81■■□□□ 1.4
UBR4-213ENST00000483922 SYNJ1O43426 1573 aa23.77■■□□□ 1.4
UBR4-213ENST00000483922 SYNJ2O15056 1496 aa23.76■■□□□ 1.39
UBR4-213ENST00000483922 GAPVD1Q14C86 1478 aa23.69■■□□□ 1.38
UBR4-213ENST00000483922 PBRM1Q86U86 1689 aa23.65■■□□□ 1.38
UBR4-213ENST00000483922 ABCA10Q8WWZ4 1543 aa23.64■■□□□ 1.37
UBR4-213ENST00000483922 ABCA5Q8WWZ7 1642 aa23.62■■□□□ 1.37
UBR4-213ENST00000483922 ERCC6L2Q5T890 1561 aa23.61■■□□□ 1.37
UBR4-213ENST00000483922 GRIN2AQ12879 1464 aa23.51■■□□□ 1.35
UBR4-213ENST00000483922 CEP170Q5SW79 1584 aa23.48■■□□□ 1.35
UBR4-213ENST00000483922 NUP160Q12769 1436 aa23.48■■□□□ 1.35
UBR4-213ENST00000483922 SUPT5HO00267 1087 aaKnown RBP23.47■■□□□ 1.35
UBR4-213ENST00000483922 AEBP2Q6ZN18 517 aaPredicted RBP23.46■■□□□ 1.35
UBR4-213ENST00000483922 WRNQ14191 1432 aaPredicted RBP eCLIP23.45■■□□□ 1.34
UBR4-213ENST00000483922 ADAMTS12P58397 1594 aa23.44■■□□□ 1.34
UBR4-213ENST00000483922 SHROOM2Q13796 1616 aa23.38■■□□□ 1.33
UBR4-213ENST00000483922 TOP2BQ02880 1626 aa23.37■■□□□ 1.33
UBR4-213ENST00000483922 FHAD1B1AJZ9 1412 aa23.37■■□□□ 1.33
UBR4-213ENST00000483922 BIVM-ERCC5R4GMW8 1640 aa23.37■■□□□ 1.33
UBR4-213ENST00000483922 ERICH3Q5RHP9 1530 aa23.29■■□□□ 1.32
UBR4-213ENST00000483922 PRG4Q92954 1404 aaPredicted RBP23.27■■□□□ 1.32
UBR4-213ENST00000483922 JPH4Q96JJ6 628 aa23.27■■□□□ 1.32
UBR4-213ENST00000483922 KIF13AQ9H1H9 1805 aa23.24■■□□□ 1.31
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms