Protein–RNA interactions for Protein: P07384

CAPN1, Calpain-1 catalytic subunit, humanhuman

Predictions only

Length 714 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CAPN1P07384 TMEM209-202ENST00000462753 2322 ntAPPRIS ALT1 TSL 5 BASIC14.72□□□□□ -0.05
CAPN1P07384 R3HDM2P2-201ENST00000401880 2116 ntBASIC14.72□□□□□ -0.05
CAPN1P07384 SHC1-204ENST00000368450 3059 ntAPPRIS ALT1 TSL 1 (best) BASIC14.72□□□□□ -0.05
CAPN1P07384 SHC1-205ENST00000368453 3062 ntAPPRIS P3 TSL 1 (best) BASIC14.72□□□□□ -0.05
CAPN1P07384 HNF4G-201ENST00000354370 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC14.72□□□□□ -0.05
CAPN1P07384 ZCCHC17-206ENST00000616393 1534 ntTSL 5 BASIC14.72□□□□□ -0.05
CAPN1P07384 AC093525.8-201ENST00000624099 1342 ntBASIC14.72□□□□□ -0.05
CAPN1P07384 AP001267.2-201ENST00000532619 2086 ntBASIC14.72□□□□□ -0.05
CAPN1P07384 CYTH3-201ENST00000350796 4505 ntAPPRIS P2 TSL 1 (best) BASIC14.72□□□□□ -0.05
CAPN1P07384 CYTH3-202ENST00000396741 4508 ntAPPRIS ALT1 TSL 5 BASIC14.72□□□□□ -0.05
CAPN1P07384 ZC3HAV1-204ENST00000471652 3182 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
CAPN1P07384 HTR3A-205ENST00000504030 2432 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
CAPN1P07384 MYCN-202ENST00000638417 1693 ntTSL 2 BASIC14.72□□□□□ -0.05
CAPN1P07384 PCDHA9-202ENST00000532602 6293 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
CAPN1P07384 NR1H3-203ENST00000405853 1480 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
CAPN1P07384 IL9R-202ENST00000369423 2032 ntAPPRIS ALT2 TSL 1 (best) BASIC14.72□□□□□ -0.05
CAPN1P07384 ADGRE2-208ENST00000595839 2046 ntTSL 5 BASIC14.72□□□□□ -0.05
CAPN1P07384 ATXN10-202ENST00000381061 3135 ntTSL 2 BASIC14.72□□□□□ -0.05
CAPN1P07384 POLR2J-201ENST00000292614 932 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
CAPN1P07384 IFITM3-201ENST00000399808 808 ntAPPRIS P2 TSL 1 (best) BASIC14.72□□□□□ -0.05
CAPN1P07384 AC243836.1-201ENST00000416696 438 ntTSL 3 BASIC14.72□□□□□ -0.05
CAPN1P07384 TREX1-201ENST00000433541 1105 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
CAPN1P07384 KRT223P-202ENST00000449164 1292 ntBASIC14.72□□□□□ -0.05
CAPN1P07384 CXorf40A-211ENST00000450602 1204 ntAPPRIS P3 TSL 3 BASIC14.72□□□□□ -0.05
CAPN1P07384 AP000345.1-201ENST00000454863 569 ntTSL 4 BASIC14.72□□□□□ -0.05
CAPN1P07384 AC097717.1-202ENST00000457577 740 ntTSL 3 BASIC14.72□□□□□ -0.05
CAPN1P07384 MTX3-202ENST00000512528 1280 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
CAPN1P07384 AP001889.1-201ENST00000525414 633 ntBASIC14.72□□□□□ -0.05
CAPN1P07384 MIF4GD-206ENST00000579119 856 ntTSL 3 BASIC14.72□□□□□ -0.05
CAPN1P07384 PIGL-212ENST00000581006 554 ntTSL 4 BASIC14.72□□□□□ -0.05
CAPN1P07384 ZNF180-204ENST00000586637 1023 ntTSL 5 BASIC14.72□□□□□ -0.05
CAPN1P07384 AC107373.2-201ENST00000607735 490 ntBASIC14.72□□□□□ -0.05
CAPN1P07384 AC005252.2-201ENST00000624630 1141 ntBASIC14.72□□□□□ -0.05
CAPN1P07384 AC092506.1-204ENST00000634888 1066 ntTSL 5 BASIC14.72□□□□□ -0.05
CAPN1P07384 AL590132.1-202ENST00000638983 4184 ntTSL 5 BASIC14.72□□□□□ -0.05
CAPN1P07384 ZPBP2-202ENST00000377940 2177 ntAPPRIS ALT2 TSL 1 (best) BASIC14.72□□□□□ -0.05
CAPN1P07384 ZNF655-212ENST00000424881 4666 ntAPPRIS ALT2 TSL 2 BASIC14.72□□□□□ -0.05
CAPN1P07384 EIF3J-AS1-201ENST00000313807 2863 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
CAPN1P07384 TGFB1I1-201ENST00000361773 1773 ntAPPRIS P3 TSL 1 (best) BASIC14.72□□□□□ -0.05
CAPN1P07384 FRMD5-201ENST00000402883 4091 ntTSL 5 BASIC14.72□□□□□ -0.05
CAPN1P07384 PIDD1-201ENST00000347755 2998 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
CAPN1P07384 COX10-AS1-202ENST00000449363 1944 ntTSL 2 BASIC14.72□□□□□ -0.05
CAPN1P07384 POLR2B-205ENST00000441246 3839 ntTSL 2 BASIC14.72□□□□□ -0.05
CAPN1P07384 HOXA3-201ENST00000317201 2761 ntAPPRIS P1 TSL 5 BASIC14.72□□□□□ -0.05
CAPN1P07384 ZMYND15-201ENST00000269289 2448 ntTSL 5 BASIC14.72□□□□□ -0.05
CAPN1P07384 TFAP2A-213ENST00000482890 2071 ntAPPRIS P3 TSL 5 BASIC14.72□□□□□ -0.05
CAPN1P07384 ZNF890P-201ENST00000422060 1352 ntTSL 2 BASIC14.72□□□□□ -0.05
CAPN1P07384 FDFT1-202ENST00000443614 1393 ntTSL 2 BASIC14.72□□□□□ -0.05
CAPN1P07384 CCDC88A-201ENST00000263630 9667 ntAPPRIS P3 TSL 1 (best) BASIC14.71□□□□□ -0.05
CAPN1P07384 CYB561D2-202ENST00000418577 1533 ntAPPRIS P1 TSL 2 BASIC14.71□□□□□ -0.05
CAPN1P07384 TRIM13-202ENST00000378182 7249 ntAPPRIS P3 TSL 1 (best) BASIC14.71□□□□□ -0.05
CAPN1P07384 MFRP-201ENST00000360167 1663 ntTSL 2 BASIC14.71□□□□□ -0.05
CAPN1P07384 SLC7A4-202ENST00000403586 2307 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
CAPN1P07384 PPP1R13L-202ENST00000418234 3118 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
CAPN1P07384 APOBEC3A-202ENST00000402255 1478 ntAPPRIS P1 TSL 5 BASIC14.71□□□□□ -0.05
CAPN1P07384 VIPAS39-202ENST00000343765 2761 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
CAPN1P07384 ST20-AS1-201ENST00000560255 4223 ntBASIC14.71□□□□□ -0.05
CAPN1P07384 PLA1A-201ENST00000273371 1786 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
CAPN1P07384 TC2N-206ENST00000556018 1770 ntTSL 2 BASIC14.71□□□□□ -0.05
CAPN1P07384 USE1-206ENST00000595101 1776 ntTSL 2 BASIC14.71□□□□□ -0.05
CAPN1P07384 ARHGAP4-203ENST00000370028 3372 ntAPPRIS ALT2 TSL 1 (best) BASIC14.71□□□□□ -0.05
CAPN1P07384 HLA-K-203ENST00000430151 1046 ntBASIC14.71□□□□□ -0.05
CAPN1P07384 RPL28-204ENST00000431533 590 ntTSL 2 BASIC14.71□□□□□ -0.05
CAPN1P07384 KRT43P-201ENST00000434019 910 ntBASIC14.71□□□□□ -0.05
CAPN1P07384 AL731661.1-201ENST00000438217 758 ntTSL 5 BASIC14.71□□□□□ -0.05
CAPN1P07384 ZNF589-204ENST00000440261 917 ntTSL 2 BASIC14.71□□□□□ -0.05
CAPN1P07384 TMEM147-AS1-201ENST00000444728 487 ntTSL 3 BASIC14.71□□□□□ -0.05
CAPN1P07384 LINC01939-201ENST00000445279 694 ntTSL 5 BASIC14.71□□□□□ -0.05
CAPN1P07384 TIMM8B-201ENST00000504148 819 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
CAPN1P07384 AC026410.3-201ENST00000514280 936 ntBASIC14.71□□□□□ -0.05
CAPN1P07384 AC104989.1-201ENST00000519711 778 ntBASIC14.71□□□□□ -0.05
CAPN1P07384 AC090735.1-201ENST00000523881 488 ntTSL 4 BASIC14.71□□□□□ -0.05
CAPN1P07384 ZNF7-206ENST00000528130 1134 ntTSL 5 BASIC14.71□□□□□ -0.05
CAPN1P07384 IL32-232ENST00000552356 623 ntAPPRIS ALT2 TSL 3 BASIC14.71□□□□□ -0.05
CAPN1P07384 RPL28-206ENST00000558752 671 ntTSL 3 BASIC14.71□□□□□ -0.05
CAPN1P07384 RAB11B-202ENST00000594216 894 ntTSL 2 BASIC14.71□□□□□ -0.05
CAPN1P07384 AGRN-201ENST00000379370 7323 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
CAPN1P07384 ZBTB7C-213ENST00000588982 4949 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
CAPN1P07384 PRKD2-202ENST00000433867 3321 ntAPPRIS P3 TSL 5 BASIC14.71□□□□□ -0.05
CAPN1P07384 BEND6-203ENST00000370748 3497 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
CAPN1P07384 PLTP-201ENST00000354050 1731 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
CAPN1P07384 RNASEH1-201ENST00000315212 1887 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
CAPN1P07384 PRPSAP2-216ENST00000536323 1872 ntTSL 2 BASIC14.71□□□□□ -0.05
CAPN1P07384 AL137783.1-201ENST00000623494 1896 ntBASIC14.71□□□□□ -0.05
CAPN1P07384 CTTN-202ENST00000346329 3272 ntAPPRIS P3 TSL 1 (best) BASIC14.71□□□□□ -0.05
CAPN1P07384 RSPH3-201ENST00000252655 2175 ntAPPRIS P2 TSL 1 (best) BASIC14.71□□□□□ -0.05
CAPN1P07384 SYP-201ENST00000263233 2498 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
CAPN1P07384 UBQLN1-202ENST00000376395 4118 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.06
CAPN1P07384 CREB3L3-204ENST00000602147 1382 ntTSL 1 (best) BASIC14.71□□□□□ -0.06
CAPN1P07384 PDIA3P1-201ENST00000471856 1510 ntBASIC14.71□□□□□ -0.06
CAPN1P07384 AL138799.1-201ENST00000448213 1675 ntBASIC14.71□□□□□ -0.06
CAPN1P07384 SLC26A11-201ENST00000361193 2885 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.06
CAPN1P07384 BBS2-201ENST00000245157 2963 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
CAPN1P07384 UBE2D1-201ENST00000373910 2659 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
CAPN1P07384 SEZ6L-209ENST00000529632 6534 ntAPPRIS ALT2 TSL 1 (best) BASIC14.7□□□□□ -0.06
CAPN1P07384 TP73-213ENST00000604479 1623 ntTSL 5 BASIC14.7□□□□□ -0.06
CAPN1P07384 TTLL10-AS1-201ENST00000379317 3532 ntTSL 2 BASIC14.7□□□□□ -0.06
CAPN1P07384 PRPH-201ENST00000257860 3245 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
CAPN1P07384 COMP-201ENST00000222271 2461 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
CAPN1P07384 TRMT1-201ENST00000221504 2179 ntAPPRIS ALT2 TSL 1 (best) BASIC14.7□□□□□ -0.06
Retrieved 100 of 98,524 protein–RNA pairs in 32.6 ms