Protein–RNA interactions for Protein: O60481

ZIC3, Zinc finger protein ZIC 3, humanhuman

Predictions only

Length 467 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZIC3O60481 CDK5RAP3-201ENST00000338399 1866 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
ZIC3O60481 STRA6-205ENST00000432245 1889 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
ZIC3O60481 LINC02076-201ENST00000577684 1871 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
ZIC3O60481 MFRP-201ENST00000360167 1663 ntTSL 2 BASIC13.32□□□□□ -0.28
ZIC3O60481 TRAPPC11-202ENST00000357207 4435 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
ZIC3O60481 KRTAP21-2-201ENST00000333892 440 ntAPPRIS P1 BASIC13.32□□□□□ -0.28
ZIC3O60481 CDKN1A-202ENST00000373711 793 ntAPPRIS P1 TSL 5 BASIC13.32□□□□□ -0.28
ZIC3O60481 PPP1R14B-202ENST00000392210 600 ntTSL 3 BASIC13.32□□□□□ -0.28
ZIC3O60481 CD8B-204ENST00000393759 1096 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
ZIC3O60481 THAP4-202ENST00000402136 785 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
ZIC3O60481 AC105362.1-201ENST00000511234 564 ntTSL 3 BASIC13.32□□□□□ -0.28
ZIC3O60481 AP003065.1-201ENST00000540912 562 ntTSL 4 BASIC13.32□□□□□ -0.28
ZIC3O60481 TMEM208-207ENST00000563953 887 ntTSL 2 BASIC13.32□□□□□ -0.28
ZIC3O60481 AL445483.1-201ENST00000568695 736 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
ZIC3O60481 AP005329.1-201ENST00000578800 1035 ntTSL 2 BASIC13.32□□□□□ -0.28
ZIC3O60481 TNNT1-209ENST00000587758 1016 ntAPPRIS ALT2 TSL 1 (best) BASIC13.32□□□□□ -0.28
ZIC3O60481 ZNF586-206ENST00000599802 581 ntTSL 3 BASIC13.32□□□□□ -0.28
ZIC3O60481 STPG3-204ENST00000611378 1015 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
ZIC3O60481 MIR6720-201ENST00000611664 98 ntBASIC13.32□□□□□ -0.28
ZIC3O60481 GPR182-203ENST00000622922 591 ntBASIC13.32□□□□□ -0.28
ZIC3O60481 CYP1B1-AS1-221ENST00000627172 995 ntTSL 5 BASIC13.32□□□□□ -0.28
ZIC3O60481 Z98259.2-201ENST00000641583 609 ntBASIC13.32□□□□□ -0.28
ZIC3O60481 SH3BP2-207ENST00000503393 9158 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
ZIC3O60481 DMTN-202ENST00000358242 2772 ntTSL 5 BASIC13.32□□□□□ -0.28
ZIC3O60481 CELF4-223ENST00000603232 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC13.32□□□□□ -0.28
ZIC3O60481 SYNRG-222ENST00000614941 3406 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
ZIC3O60481 SLC35A1-202ENST00000369556 1720 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
ZIC3O60481 HCG27-201ENST00000383331 1720 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
ZIC3O60481 INSC-208ENST00000530161 1702 ntAPPRIS ALT2 TSL 1 (best) BASIC13.32□□□□□ -0.28
ZIC3O60481 CYP4X1-201ENST00000371901 2357 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
ZIC3O60481 TNXB-208ENST00000611016 6083 ntTSL 5 BASIC13.32□□□□□ -0.28
ZIC3O60481 DDX1-202ENST00000381341 2817 ntAPPRIS P1 TSL 5 BASIC13.32□□□□□ -0.28
ZIC3O60481 NIPAL4-201ENST00000311946 3274 ntAPPRIS P3 TSL 1 (best) BASIC13.32□□□□□ -0.28
ZIC3O60481 SLC16A3-211ENST00000581287 4830 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
ZIC3O60481 UROD-201ENST00000246337 1300 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
ZIC3O60481 CASP6-202ENST00000352981 1347 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
ZIC3O60481 GRN-222ENST00000639447 1314 ntTSL 2 BASIC13.32□□□□□ -0.28
ZIC3O60481 ZFP36-203ENST00000597629 1786 ntAPPRIS P2 TSL 1 (best) BASIC13.32□□□□□ -0.28
ZIC3O60481 USP35-203ENST00000529308 4216 ntAPPRIS P1 TSL 5 BASIC13.32□□□□□ -0.28
ZIC3O60481 XPO1-201ENST00000401558 4915 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
ZIC3O60481 GLG1-202ENST00000422840 4748 ntAPPRIS ALT2 TSL 1 (best) BASIC13.32□□□□□ -0.28
ZIC3O60481 NR4A1-213ENST00000550082 2029 ntTSL 5 BASIC13.32□□□□□ -0.28
ZIC3O60481 CRK-201ENST00000300574 3880 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
ZIC3O60481 SLC35E2-202ENST00000355439 2078 ntAPPRIS ALT2 TSL 1 (best) BASIC13.32□□□□□ -0.28
ZIC3O60481 ZBTB32-202ENST00000392197 2068 ntAPPRIS P1 TSL 5 BASIC13.32□□□□□ -0.28
ZIC3O60481 MEIOC-201ENST00000409122 4604 ntAPPRIS P2 TSL 5 BASIC13.32□□□□□ -0.28
ZIC3O60481 ZNF334-202ENST00000457685 3487 ntTSL 2 BASIC13.32□□□□□ -0.28
ZIC3O60481 MAGEB2-201ENST00000378988 1610 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
ZIC3O60481 PODN-201ENST00000312553 3010 ntAPPRIS P3 TSL 1 (best) BASIC13.31□□□□□ -0.28
ZIC3O60481 POLR1E-202ENST00000377798 1868 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
ZIC3O60481 DUOXA1-216ENST00000613425 1867 ntTSL 5 BASIC13.31□□□□□ -0.28
ZIC3O60481 FKBP5-201ENST00000357266 3772 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
ZIC3O60481 ACOT7-203ENST00000377845 1432 ntAPPRIS ALT2 TSL 1 (best) BASIC13.31□□□□□ -0.28
ZIC3O60481 XK-201ENST00000378616 5206 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
ZIC3O60481 PLSCR4-204ENST00000446574 1442 ntAPPRIS P1 TSL 2 BASIC13.31□□□□□ -0.28
ZIC3O60481 DIDO1-201ENST00000266070 8574 ntAPPRIS ALT2 TSL 5 BASIC13.31□□□□□ -0.28
ZIC3O60481 STRA6-207ENST00000535552 2631 ntTSL 2 BASIC13.31□□□□□ -0.28
ZIC3O60481 NFYC-215ENST00000456393 1911 ntAPPRIS ALT1 TSL 1 (best) BASIC13.31□□□□□ -0.28
ZIC3O60481 FRMPD4-201ENST00000380682 8465 ntAPPRIS P2 TSL 1 (best) BASIC13.31□□□□□ -0.28
ZIC3O60481 ACTA1-202ENST00000366684 1491 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
ZIC3O60481 SOX30-202ENST00000311371 2716 ntAPPRIS ALT2 TSL 1 (best) BASIC13.31□□□□□ -0.28
ZIC3O60481 FGR-203ENST00000374005 2729 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
ZIC3O60481 NF2-209ENST00000403999 2999 ntAPPRIS ALT1 TSL 1 (best) BASIC13.31□□□□□ -0.28
ZIC3O60481 LINC02228-204ENST00000642115 2962 ntBASIC13.31□□□□□ -0.28
ZIC3O60481 BTBD11-204ENST00000420571 3478 ntTSL 5 BASIC13.31□□□□□ -0.28
ZIC3O60481 NANOS1-202ENST00000425699 4017 ntAPPRIS P2 BASIC13.31□□□□□ -0.28
ZIC3O60481 PAK1-201ENST00000278568 2543 ntTSL 2 BASIC13.31□□□□□ -0.28
ZIC3O60481 KHSRPP1-201ENST00000427983 1768 ntBASIC13.31□□□□□ -0.28
ZIC3O60481 MPV17-201ENST00000233545 998 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
ZIC3O60481 C8orf74-201ENST00000304519 1036 ntAPPRIS P2 TSL 1 (best) BASIC13.31□□□□□ -0.28
ZIC3O60481 GPR148-201ENST00000309926 1267 ntAPPRIS P1 BASIC13.31□□□□□ -0.28
ZIC3O60481 CLIC1-206ENST00000375779 1127 ntAPPRIS P1 TSL 5 BASIC13.31□□□□□ -0.28
ZIC3O60481 LINC00278-201ENST00000425031 528 ntTSL 2 BASIC13.31□□□□□ -0.28
ZIC3O60481 PTPA-215ENST00000432124 567 ntTSL 4 BASIC13.31□□□□□ -0.28
ZIC3O60481 AL157407.1-201ENST00000435784 904 ntBASIC13.31□□□□□ -0.28
ZIC3O60481 AC012441.2-201ENST00000444843 739 ntBASIC13.31□□□□□ -0.28
ZIC3O60481 MSC-AS1-204ENST00000518916 864 ntTSL 3 BASIC13.31□□□□□ -0.28
ZIC3O60481 AP001258.2-201ENST00000529891 490 ntBASIC13.31□□□□□ -0.28
ZIC3O60481 ANO1-AS2-202ENST00000533327 498 ntTSL 3 BASIC13.31□□□□□ -0.28
ZIC3O60481 ZNF385A-213ENST00000551771 1111 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
ZIC3O60481 LINC02332-201ENST00000557232 386 ntTSL 3 BASIC13.31□□□□□ -0.28
ZIC3O60481 LINC00658-206ENST00000600157 901 ntTSL 5 BASIC13.31□□□□□ -0.28
ZIC3O60481 THRA-203ENST00000450525 4895 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
ZIC3O60481 TFAP2A-213ENST00000482890 2071 ntAPPRIS P3 TSL 5 BASIC13.31□□□□□ -0.28
ZIC3O60481 ARHGAP39-201ENST00000276826 4697 ntAPPRIS ALT2 TSL 2 BASIC13.31□□□□□ -0.28
ZIC3O60481 HNRNPA1-202ENST00000340913 1842 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
ZIC3O60481 SRPK1-204ENST00000373825 4592 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
ZIC3O60481 AL513477.1-201ENST00000602865 2407 ntBASIC13.31□□□□□ -0.28
ZIC3O60481 PTBP1-203ENST00000356948 3598 ntAPPRIS ALT1 TSL 1 (best) BASIC13.31□□□□□ -0.28
ZIC3O60481 KRT8P28-201ENST00000433288 1390 ntBASIC13.31□□□□□ -0.28
ZIC3O60481 AC020907.1-201ENST00000616460 1350 ntBASIC13.31□□□□□ -0.28
ZIC3O60481 RALGAPA1-203ENST00000389698 7864 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
ZIC3O60481 HOGA1-203ENST00000370647 1999 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
ZIC3O60481 PDE9A-208ENST00000398225 1963 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
ZIC3O60481 SLC38A5-213ENST00000620913 1993 ntAPPRIS P1 TSL 5 BASIC13.31□□□□□ -0.28
ZIC3O60481 DNAI1-209ENST00000614641 2598 ntAPPRIS ALT2 TSL 5 BASIC13.3□□□□□ -0.28
ZIC3O60481 NMNAT3-203ENST00000413939 1711 ntTSL 2 BASIC13.3□□□□□ -0.28
ZIC3O60481 CDK16-211ENST00000518022 2022 ntAPPRIS P1 TSL 2 BASIC13.3□□□□□ -0.28
ZIC3O60481 MAGEA2-203ENST00000611557 2024 ntAPPRIS P1 TSL 5 BASIC13.3□□□□□ -0.28
ZIC3O60481 AC005264.1-201ENST00000587587 2319 ntTSL 2 BASIC13.3□□□□□ -0.28
Retrieved 100 of 98,524 protein–RNA pairs in 43.9 ms