Protein–RNA interactions for Protein: Q7Z6J0

SH3RF1, E3 ubiquitin-protein ligase SH3RF1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1Q7Z6J0 RPP38-201ENST00000378197 1457 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.81
SH3RF1Q7Z6J0 EEF1D-203ENST00000419152 1452 ntAPPRIS ALT2 TSL 5 BASIC26.33■■□□□ 1.81
SH3RF1Q7Z6J0 ZFYVE28-202ENST00000503000 1874 ntTSL 1 (best) BASIC26.33■■□□□ 1.81
SH3RF1Q7Z6J0 R3HDM4-201ENST00000361574 1815 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
SH3RF1Q7Z6J0 ST3GAL5-269ENST00000640992 2292 ntAPPRIS ALT2 TSL 5 BASIC26.32■■□□□ 1.8
SH3RF1Q7Z6J0 FOXO3B-201ENST00000395675 1928 ntBASIC26.32■■□□□ 1.8
SH3RF1Q7Z6J0 AP000802.1-201ENST00000500537 1934 ntTSL 1 (best) BASIC26.32■■□□□ 1.8
SH3RF1Q7Z6J0 CIRBP-216ENST00000588090 1459 ntAPPRIS P3 TSL 3 BASIC26.32■■□□□ 1.8
SH3RF1Q7Z6J0 NPW-201ENST00000329610 498 ntAPPRIS P2 TSL 1 (best) BASIC26.32■■□□□ 1.8
SH3RF1Q7Z6J0 CLTA-204ENST00000433436 1235 ntAPPRIS ALT1 TSL 1 (best) BASIC26.32■■□□□ 1.8
SH3RF1Q7Z6J0 CLTA-209ENST00000538225 1181 ntTSL 2 BASIC26.32■■□□□ 1.8
SH3RF1Q7Z6J0 CLTA-210ENST00000540080 989 ntTSL 2 BASIC26.32■■□□□ 1.8
SH3RF1Q7Z6J0 AC142381.2-201ENST00000566120 298 ntBASIC26.32■■□□□ 1.8
SH3RF1Q7Z6J0 MCRIP1-210ENST00000576431 577 ntTSL 5 BASIC26.32■■□□□ 1.8
SH3RF1Q7Z6J0 P4HA3-201ENST00000331597 2274 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
SH3RF1Q7Z6J0 SUMF1-202ENST00000383843 1447 ntTSL 2 BASIC26.31■■□□□ 1.8
SH3RF1Q7Z6J0 BSPRY-201ENST00000374183 2339 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
SH3RF1Q7Z6J0 RASGEF1B-208ENST00000510780 539 ntTSL 3 BASIC26.31■■□□□ 1.8
SH3RF1Q7Z6J0 RASGEF1B-209ENST00000512343 498 ntTSL 3 BASIC26.31■■□□□ 1.8
SH3RF1Q7Z6J0 RAX2-202ENST00000555978 2145 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
SH3RF1Q7Z6J0 GAK-223ENST00000628912 497 ntTSL 5 BASIC26.31■■□□□ 1.8
SH3RF1Q7Z6J0 SLC35A2-209ENST00000452555 1563 ntTSL 2 BASIC26.31■■□□□ 1.8
SH3RF1Q7Z6J0 GALNT12-201ENST00000375011 2735 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
SH3RF1Q7Z6J0 TSPAN4-202ENST00000397396 1332 ntTSL 5 BASIC26.31■■□□□ 1.8
SH3RF1Q7Z6J0 GOLGA7-201ENST00000357743 2027 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
SH3RF1Q7Z6J0 AC141586.4-201ENST00000624558 1573 ntBASIC26.3■■□□□ 1.8
SH3RF1Q7Z6J0 LRRC1-201ENST00000370882 808 ntTSL 3 BASIC26.3■■□□□ 1.8
SH3RF1Q7Z6J0 SSR2-210ENST00000480567 895 ntAPPRIS P1 TSL 2 BASIC26.3■■□□□ 1.8
SH3RF1Q7Z6J0 LINC01632-201ENST00000615763 496 ntTSL 3 BASIC26.3■■□□□ 1.8
SH3RF1Q7Z6J0 ID2-201ENST00000234091 2041 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
SH3RF1Q7Z6J0 CDH23-206ENST00000398842 1759 ntTSL 5 BASIC26.3■■□□□ 1.8
SH3RF1Q7Z6J0 RNPEP-202ENST00000367286 2282 ntTSL 5 BASIC26.3■■□□□ 1.8
SH3RF1Q7Z6J0 PSKH1-202ENST00000570631 1509 ntTSL 1 (best) BASIC26.29■■□□□ 1.8
SH3RF1Q7Z6J0 CCND3-223ENST00000616010 2047 ntTSL 5 BASIC26.29■■□□□ 1.8
SH3RF1Q7Z6J0 BDH1-207ENST00000441275 1605 ntTSL 5 BASIC26.29■■□□□ 1.8
SH3RF1Q7Z6J0 LURAP1L-201ENST00000319264 1753 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
SH3RF1Q7Z6J0 CLPSL2-201ENST00000360454 488 ntAPPRIS ALT2 TSL 1 (best) BASIC26.29■■□□□ 1.8
SH3RF1Q7Z6J0 YPEL1-202ENST00000403503 466 ntTSL 3 BASIC26.29■■□□□ 1.8
SH3RF1Q7Z6J0 ZNRF1-205ENST00000566250 1069 ntTSL 1 (best) BASIC26.29■■□□□ 1.8
SH3RF1Q7Z6J0 ZNRF1-206ENST00000567962 1234 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
SH3RF1Q7Z6J0 AC135279.3-201ENST00000610945 1311 ntBASIC26.29■■□□□ 1.8
SH3RF1Q7Z6J0 CYP4V2-201ENST00000378802 2042 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
SH3RF1Q7Z6J0 ESR2-202ENST00000341099 2060 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
SH3RF1Q7Z6J0 RFC2-201ENST00000055077 1695 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
SH3RF1Q7Z6J0 TMEM51-205ENST00000434578 1861 ntTSL 1 (best) BASIC26.28■■□□□ 1.8
SH3RF1Q7Z6J0 DOK3-205ENST00000501403 1872 ntAPPRIS P1 TSL 5 BASIC26.28■■□□□ 1.8
SH3RF1Q7Z6J0 CD72-202ENST00000378430 585 ntTSL 3 BASIC26.28■■□□□ 1.8
SH3RF1Q7Z6J0 FGD5-AS1-204ENST00000430166 1184 ntTSL 2 BASIC26.28■■□□□ 1.8
SH3RF1Q7Z6J0 AP006621.1-201ENST00000532946 536 ntTSL 5 BASIC26.28■■□□□ 1.8
SH3RF1Q7Z6J0 RPRD1A-207ENST00000588737 1264 ntTSL 2 BASIC26.28■■□□□ 1.8
SH3RF1Q7Z6J0 TMEM80-207ENST00000608174 800 ntTSL 5 BASIC26.28■■□□□ 1.8
SH3RF1Q7Z6J0 ACBD4-216ENST00000619916 1276 ntTSL 5 BASIC26.28■■□□□ 1.8
SH3RF1Q7Z6J0 EPM2A-209ENST00000638262 2679 ntTSL 1 (best) BASIC26.28■■□□□ 1.8
SH3RF1Q7Z6J0 LRRC24-201ENST00000529415 1758 ntAPPRIS P2 TSL 1 (best) BASIC26.28■■□□□ 1.8
SH3RF1Q7Z6J0 RFNG-201ENST00000310496 1828 ntAPPRIS P1 TSL 2 BASIC26.28■■□□□ 1.8
SH3RF1Q7Z6J0 FZD9-201ENST00000344575 2338 ntAPPRIS P1 BASIC26.27■■□□□ 1.8
SH3RF1Q7Z6J0 SPAG16-201ENST00000272898 1059 ntTSL 5 BASIC26.27■■□□□ 1.8
SH3RF1Q7Z6J0 EIF6-201ENST00000374436 1252 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
SH3RF1Q7Z6J0 MIR17HG-201ENST00000400282 931 ntTSL 1 (best) BASIC26.27■■□□□ 1.8
SH3RF1Q7Z6J0 AL031432.3-201ENST00000607698 485 ntBASIC26.27■■□□□ 1.8
SH3RF1Q7Z6J0 RARA-AS1-201ENST00000581080 1790 ntTSL 1 (best) BASIC26.27■■□□□ 1.8
SH3RF1Q7Z6J0 HEXDC-202ENST00000337014 2285 ntTSL 1 (best) BASIC26.26■■□□□ 1.79
SH3RF1Q7Z6J0 AGTR1-203ENST00000404754 2252 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
SH3RF1Q7Z6J0 GBX2-201ENST00000306318 2123 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
SH3RF1Q7Z6J0 MYL5-208ENST00000511290 781 ntTSL 1 (best) BASIC26.26■■□□□ 1.79
SH3RF1Q7Z6J0 KLF15-201ENST00000296233 2574 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
SH3RF1Q7Z6J0 SNF8-202ENST00000502492 2319 ntAPPRIS P3 TSL 1 (best) BASIC26.26■■□□□ 1.79
SH3RF1Q7Z6J0 ATG16L2-205ENST00000534905 1614 ntTSL 1 (best) BASIC26.25■■□□□ 1.79
SH3RF1Q7Z6J0 TMEM256-PLSCR3-204ENST00000573331 2557 ntAPPRIS P5 TSL 2 BASIC26.25■■□□□ 1.79
SH3RF1Q7Z6J0 BCKDHB-202ENST00000356489 1514 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
SH3RF1Q7Z6J0 HOXA11-AS1_1.1-201ENST00000613939 98 ntBASIC26.25■■□□□ 1.79
SH3RF1Q7Z6J0 CLPTM1-201ENST00000337392 2604 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
SH3RF1Q7Z6J0 DVL1-201ENST00000378888 3239 ntAPPRIS ALT1 TSL 5 BASIC26.25■■□□□ 1.79
SH3RF1Q7Z6J0 DYRK3-203ENST00000367109 2163 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
SH3RF1Q7Z6J0 RAB20-201ENST00000267328 1518 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
SH3RF1Q7Z6J0 LTBP3-212ENST00000529189 1997 ntTSL 2 BASIC26.24■■□□□ 1.79
SH3RF1Q7Z6J0 MADCAM1-202ENST00000346144 1309 ntAPPRIS ALT2 TSL 1 (best) BASIC26.24■■□□□ 1.79
SH3RF1Q7Z6J0 IL20RA-202ENST00000367746 1244 ntTSL 2 BASIC26.24■■□□□ 1.79
SH3RF1Q7Z6J0 LGR4-203ENST00000480977 492 ntTSL 2 BASIC26.24■■□□□ 1.79
SH3RF1Q7Z6J0 SUDS3P1-201ENST00000505831 966 ntBASIC26.24■■□□□ 1.79
SH3RF1Q7Z6J0 NDUFS3-206ENST00000528192 561 ntTSL 5 BASIC26.24■■□□□ 1.79
SH3RF1Q7Z6J0 EIF3J-203ENST00000535391 925 ntTSL 2 BASIC26.24■■□□□ 1.79
SH3RF1Q7Z6J0 AC104564.3-201ENST00000582367 638 ntBASIC26.24■■□□□ 1.79
SH3RF1Q7Z6J0 SLC9A3-201ENST00000264938 2584 ntAPPRIS P3 TSL 1 (best) BASIC26.24■■□□□ 1.79
SH3RF1Q7Z6J0 ARG2-201ENST00000261783 2045 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
SH3RF1Q7Z6J0 ATP5A1-220ENST00000593152 2258 ntTSL 2 BASIC26.23■■□□□ 1.79
SH3RF1Q7Z6J0 TRIM7-202ENST00000334421 1228 ntTSL 1 (best) BASIC26.23■■□□□ 1.79
SH3RF1Q7Z6J0 RALB-203ENST00000420510 1252 ntAPPRIS P1 TSL 2 BASIC26.23■■□□□ 1.79
SH3RF1Q7Z6J0 CDKN2A-210ENST00000530628 748 ntAPPRIS P1 TSL 5 BASIC26.23■■□□□ 1.79
SH3RF1Q7Z6J0 NRL-205ENST00000560550 788 ntTSL 1 (best) BASIC26.23■■□□□ 1.79
SH3RF1Q7Z6J0 AC011551.1-201ENST00000614101 683 ntBASIC26.23■■□□□ 1.79
SH3RF1Q7Z6J0 GNPTG-201ENST00000204679 1983 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
SH3RF1Q7Z6J0 HSD11B2-201ENST00000326152 1900 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
SH3RF1Q7Z6J0 MCUB-201ENST00000394650 2278 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
SH3RF1Q7Z6J0 C5orf58-204ENST00000521850 2113 ntAPPRIS ALT2 TSL 1 (best) BASIC26.23■■□□□ 1.79
SH3RF1Q7Z6J0 HLA-L-211ENST00000482052 1765 ntBASIC26.23■■□□□ 1.79
SH3RF1Q7Z6J0 ZDHHC1-201ENST00000348579 2047 ntAPPRIS P2 TSL 1 (best) BASIC26.22■■□□□ 1.79
SH3RF1Q7Z6J0 ATAD3B-201ENST00000308647 2448 ntAPPRIS P1 TSL 1 (best) BASIC26.22■■□□□ 1.79
SH3RF1Q7Z6J0 UNC93B3-201ENST00000308076 687 ntBASIC26.22■■□□□ 1.79
SH3RF1Q7Z6J0 CDKN2D-201ENST00000335766 1086 ntAPPRIS P1 TSL 1 (best) BASIC26.22■■□□□ 1.79
Retrieved 100 of 98,524 protein–RNA pairs in 16 ms