Protein–RNA interactions for Protein: P49761

CLK3, Dual specificity protein kinase CLK3, humanhuman

Known RBP Predictions only

Length 638 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3P49761 KCNK13-201ENST00000282146 2522 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
CLK3P49761 CT47A7-201ENST00000434883 1288 ntAPPRIS P1 TSL 2 BASIC21.56■■□□□ 1.04
CLK3P49761 C1orf122-202ENST00000373043 2229 ntAPPRIS ALT2 TSL 1 (best) BASIC21.56■■□□□ 1.04
CLK3P49761 NPAS3-210ENST00000551492 2817 ntAPPRIS ALT2 TSL 5 BASIC21.56■■□□□ 1.04
CLK3P49761 SOS2-201ENST00000216373 5498 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
CLK3P49761 C7orf25-206ENST00000447342 1823 ntTSL 2 BASIC21.55■■□□□ 1.04
CLK3P49761 PTH1R-206ENST00000430002 1947 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
CLK3P49761 PARD3-209ENST00000374790 5825 ntTSL 5 BASIC21.55■■□□□ 1.04
CLK3P49761 IL17RE-201ENST00000383814 2704 ntAPPRIS P2 TSL 1 (best) BASIC21.55■■□□□ 1.04
CLK3P49761 NDEL1-219ENST00000585098 454 ntTSL 3 BASIC21.55■■□□□ 1.04
CLK3P49761 FP236240.1-201ENST00000619537 1116 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
CLK3P49761 HOMER2-201ENST00000304231 1990 ntAPPRIS P4 TSL 5 BASIC21.55■■□□□ 1.04
CLK3P49761 PTGES2-202ENST00000338961 2331 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
CLK3P49761 TANGO2-204ENST00000401833 1920 ntTSL 5 BASIC21.55■■□□□ 1.04
CLK3P49761 SLC25A1-202ENST00000451283 1514 ntTSL 2 BASIC21.55■■□□□ 1.04
CLK3P49761 SLC30A2-201ENST00000374276 2494 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
CLK3P49761 CACNA1H-210ENST00000638323 8048 ntAPPRIS ALT2 TSL 5 BASIC21.54■■□□□ 1.04
CLK3P49761 NDUFA10-204ENST00000407129 699 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
CLK3P49761 MIR4508-201ENST00000584178 70 ntBASIC21.54■■□□□ 1.04
CLK3P49761 REPS2-202ENST00000357277 7953 ntAPPRIS P3 TSL 1 (best) BASIC21.54■■□□□ 1.04
CLK3P49761 YWHAH-201ENST00000248975 1825 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
CLK3P49761 HAS1-201ENST00000222115 2087 ntAPPRIS P3 TSL 1 (best) BASIC21.54■■□□□ 1.04
CLK3P49761 CHODL-201ENST00000299295 2548 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
CLK3P49761 RBMXL2-201ENST00000306904 1874 ntAPPRIS P1 BASIC21.54■■□□□ 1.04
CLK3P49761 PRMT5-213ENST00000553897 1857 ntTSL 2 BASIC21.54■■□□□ 1.04
CLK3P49761 ONECUT3-201ENST00000382349 8318 ntAPPRIS P1 TSL 5 BASIC21.53■■□□□ 1.04
CLK3P49761 NKX6-3-202ENST00000524115 1683 ntTSL 2 BASIC21.53■■□□□ 1.04
CLK3P49761 ZNF74-204ENST00000405993 1839 ntAPPRIS ALT2 TSL 5 BASIC21.53■■□□□ 1.04
CLK3P49761 SRP68-201ENST00000307877 2649 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
CLK3P49761 MAGED2-206ENST00000375068 2189 ntAPPRIS P2 TSL 1 (best) BASIC21.53■■□□□ 1.04
CLK3P49761 PDIA6-207ENST00000540494 2509 ntAPPRIS ALT1 TSL 2 BASIC21.53■■□□□ 1.04
CLK3P49761 AK8-201ENST00000298545 2072 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
CLK3P49761 PVT1_1.1-201ENST00000615125 194 ntBASIC21.53■■□□□ 1.04
CLK3P49761 P2RX5-201ENST00000225328 2309 ntAPPRIS P3 TSL 1 (best) BASIC21.53■■□□□ 1.04
CLK3P49761 AFDN-AS1-201ENST00000359760 2238 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
CLK3P49761 MAP6D1-201ENST00000318631 2111 ntAPPRIS P2 TSL 1 (best) BASIC21.53■■□□□ 1.04
CLK3P49761 GPR160-201ENST00000355897 2039 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
CLK3P49761 AKT1-201ENST00000349310 2866 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
CLK3P49761 PCYT2-201ENST00000331285 2147 ntTSL 2 BASIC21.52■■□□□ 1.04
CLK3P49761 PNKP-201ENST00000322344 2041 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
CLK3P49761 RAB11FIP3-201ENST00000262305 4831 ntAPPRIS P2 TSL 1 (best) BASIC21.52■■□□□ 1.04
CLK3P49761 CFAP77-202ENST00000393215 901 ntAPPRIS ALT2 TSL 5 BASIC21.52■■□□□ 1.04
CLK3P49761 TMEM238-201ENST00000444469 1000 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
CLK3P49761 GPRC5B-202ENST00000535671 1215 ntAPPRIS ALT2 TSL 1 (best) BASIC21.52■■□□□ 1.04
CLK3P49761 LHX2-201ENST00000373615 2554 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
CLK3P49761 C1QL3-201ENST00000298943 2493 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
CLK3P49761 CLDN5-201ENST00000403084 2357 ntBASIC21.52■■□□□ 1.04
CLK3P49761 SHD-204ENST00000599689 1729 ntTSL 5 BASIC21.52■■□□□ 1.03
CLK3P49761 PCMT1-202ENST00000367380 1628 ntTSL 2 BASIC21.51■■□□□ 1.03
CLK3P49761 PCMT1-211ENST00000544496 1628 ntTSL 2 BASIC21.51■■□□□ 1.03
CLK3P49761 DONSON-210ENST00000453626 2332 ntTSL 5 BASIC21.51■■□□□ 1.03
CLK3P49761 ASRGL1-202ENST00000415229 2270 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
CLK3P49761 MOB4-204ENST00000409360 1447 ntTSL 5 BASIC21.51■■□□□ 1.03
CLK3P49761 KRT8P33-201ENST00000508125 1423 ntBASIC21.51■■□□□ 1.03
CLK3P49761 FHL2-203ENST00000358129 1578 ntTSL 5 BASIC21.51■■□□□ 1.03
CLK3P49761 CITED4-201ENST00000372638 1316 ntAPPRIS P1 BASIC21.51■■□□□ 1.03
CLK3P49761 PDSS1-201ENST00000376215 1626 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
CLK3P49761 CCDC151-203ENST00000591179 1943 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
CLK3P49761 PCSK6-215ENST00000611967 3336 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
CLK3P49761 NFE2L3P1-201ENST00000588207 1959 ntBASIC21.5■■□□□ 1.03
CLK3P49761 CAPNS1-216ENST00000628306 1389 ntTSL 5 BASIC21.5■■□□□ 1.03
CLK3P49761 DLL3-201ENST00000205143 2332 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
CLK3P49761 CAMK2N1-201ENST00000375078 2336 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
CLK3P49761 CST6-201ENST00000312134 759 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
CLK3P49761 C5orf38-202ENST00000397835 681 ntAPPRIS ALT2 TSL 5 BASIC21.5■■□□□ 1.03
CLK3P49761 AC078883.1-201ENST00000442417 950 ntTSL 3 BASIC21.5■■□□□ 1.03
CLK3P49761 ZNF606-203ENST00000547121 1196 ntTSL 2 BASIC21.5■■□□□ 1.03
CLK3P49761 AC011551.1-201ENST00000614101 683 ntBASIC21.5■■□□□ 1.03
CLK3P49761 FAHD1-204ENST00000615972 757 ntTSL 5 BASIC21.5■■□□□ 1.03
CLK3P49761 PPP1R12C-201ENST00000263433 2924 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
CLK3P49761 STOML1-201ENST00000316900 2169 ntTSL 2 BASIC21.5■■□□□ 1.03
CLK3P49761 LINGO3-201ENST00000585527 2241 ntAPPRIS P1 BASIC21.49■■□□□ 1.03
CLK3P49761 GRK4-202ENST00000398051 2068 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
CLK3P49761 ZBTB22-208ENST00000431845 2651 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
CLK3P49761 TMEM260-202ENST00000538838 1638 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
CLK3P49761 DMRT2-209ENST00000635183 2190 ntTSL 5 BASIC21.49■■□□□ 1.03
CLK3P49761 LRRC45-201ENST00000306688 2701 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
CLK3P49761 TSPAN10-204ENST00000611590 1068 ntAPPRIS ALT2 TSL 1 (best) BASIC21.49■■□□□ 1.03
CLK3P49761 DENND1A-201ENST00000373618 3003 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
CLK3P49761 TMUB1-203ENST00000462940 1549 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
CLK3P49761 LSR-205ENST00000427250 1606 ntTSL 2 BASIC21.48■■□□□ 1.03
CLK3P49761 BDH1-207ENST00000441275 1605 ntTSL 5 BASIC21.48■■□□□ 1.03
CLK3P49761 R3HCC1-202ENST00000411463 1467 ntAPPRIS P5 TSL 5 BASIC21.48■■□□□ 1.03
CLK3P49761 FAM162B-201ENST00000368557 1036 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
CLK3P49761 THA1P-201ENST00000590384 1145 ntBASIC21.48■■□□□ 1.03
CLK3P49761 AC093390.2-201ENST00000638628 1007 ntTSL 5 BASIC21.48■■□□□ 1.03
CLK3P49761 ZNF444-211ENST00000592949 1906 ntAPPRIS ALT2 TSL 1 (best) BASIC21.48■■□□□ 1.03
CLK3P49761 PHACTR2-208ENST00000440869 2569 ntAPPRIS ALT2 TSL 2 BASIC21.48■■□□□ 1.03
CLK3P49761 SLC2A8-203ENST00000373371 2172 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
CLK3P49761 AC099805.1-201ENST00000523987 1797 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
CLK3P49761 DLK2-202ENST00000372485 1572 ntAPPRIS ALT1 TSL 5 BASIC21.48■■□□□ 1.03
CLK3P49761 AC090877.2-201ENST00000558441 1738 ntBASIC21.47■■□□□ 1.03
CLK3P49761 SPNS1-207ENST00000565975 1979 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
CLK3P49761 NAXE-203ENST00000368235 1125 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
CLK3P49761 MIR6089-201ENST00000616698 64 ntBASIC21.47■■□□□ 1.03
CLK3P49761 LTB4R2-205ENST00000543919 1560 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
CLK3P49761 RYK-208ENST00000620660 2942 ntAPPRIS P3 TSL 1 (best) BASIC21.47■■□□□ 1.03
CLK3P49761 IQCD-203ENST00000546692 1872 ntTSL 5 BASIC21.47■■□□□ 1.03
CLK3P49761 PPP1CC-206ENST00000550991 1882 ntTSL 2 BASIC21.47■■□□□ 1.03
CLK3P49761 KCNAB3-201ENST00000303790 2458 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
Retrieved 100 of 98,524 protein–RNA pairs in 24.2 ms