Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 MYBL1-204ENST00000522677 5192 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
CDX1P47902 REPIN1-214ENST00000489432 2058 ntAPPRIS ALT2 TSL 2 BASIC18.46■□□□□ 0.55
CDX1P47902 USP2-204ENST00000525735 1704 ntAPPRIS ALT1 TSL 1 (best) BASIC18.46■□□□□ 0.55
CDX1P47902 ANKHD1-204ENST00000394722 2035 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
CDX1P47902 SOS2-201ENST00000216373 5498 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
CDX1P47902 FAM83D-201ENST00000619304 2475 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
CDX1P47902 FBXO25-203ENST00000352684 2360 ntTSL 5 BASIC18.45■□□□□ 0.54
CDX1P47902 CST6-201ENST00000312134 759 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
CDX1P47902 AL590094.1-201ENST00000635581 706 ntTSL 2 BASIC18.45■□□□□ 0.54
CDX1P47902 RABL6-204ENST00000371671 1580 ntAPPRIS ALT2 TSL 1 (best) BASIC18.45■□□□□ 0.54
CDX1P47902 TMUB1-202ENST00000392818 1563 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
CDX1P47902 SERF1A-202ENST00000354833 1889 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
CDX1P47902 SERF1B-201ENST00000380750 1889 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
CDX1P47902 TNIP2-206ENST00000510267 2006 ntAPPRIS ALT2 TSL 2 BASIC18.45■□□□□ 0.54
CDX1P47902 KLHDC9-203ENST00000392192 1333 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
CDX1P47902 SKIDA1-201ENST00000444772 2667 ntAPPRIS ALT2 TSL 5 BASIC18.45■□□□□ 0.54
CDX1P47902 AMZ2-202ENST00000359904 2402 ntAPPRIS P1 TSL 2 BASIC18.44■□□□□ 0.54
CDX1P47902 WAS-201ENST00000376701 1849 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
CDX1P47902 JMJD8-201ENST00000412368 2038 ntAPPRIS P2 TSL 1 (best) BASIC18.44■□□□□ 0.54
CDX1P47902 NKX2-4-201ENST00000351817 2238 ntAPPRIS P1 TSL 5 BASIC18.44■□□□□ 0.54
CDX1P47902 CARNMT1-201ENST00000376830 1012 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
CDX1P47902 EPM2A-202ENST00000435470 1278 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
CDX1P47902 FP236240.1-201ENST00000619537 1116 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
CDX1P47902 AL035685.1-201ENST00000636663 812 ntBASIC18.44■□□□□ 0.54
CDX1P47902 RARA-201ENST00000254066 2414 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
CDX1P47902 NEURL4-201ENST00000315614 5182 ntAPPRIS ALT2 TSL 1 (best) BASIC18.44■□□□□ 0.54
CDX1P47902 C5orf58-204ENST00000521850 2113 ntAPPRIS ALT2 TSL 1 (best) BASIC18.44■□□□□ 0.54
CDX1P47902 CITED4-201ENST00000372638 1316 ntAPPRIS P1 BASIC18.44■□□□□ 0.54
CDX1P47902 TGFBR1-202ENST00000374994 6516 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
CDX1P47902 PPM1J-201ENST00000309276 1863 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
CDX1P47902 AC011511.4-201ENST00000586529 1850 ntAPPRIS P1 TSL 5 BASIC18.43■□□□□ 0.54
CDX1P47902 EBF4-202ENST00000380648 2910 ntAPPRIS P2 TSL 5 BASIC18.43■□□□□ 0.54
CDX1P47902 MEIS3-204ENST00000558555 1715 ntAPPRIS ALT2 TSL 5 BASIC18.43■□□□□ 0.54
CDX1P47902 RDH14-201ENST00000381249 1587 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
CDX1P47902 GAS1-201ENST00000298743 2827 ntAPPRIS P1 BASIC18.43■□□□□ 0.54
CDX1P47902 ARSB-202ENST00000396151 2316 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
CDX1P47902 SLAIN1-206ENST00000418532 2855 ntAPPRIS ALT2 TSL 5 BASIC18.43■□□□□ 0.54
CDX1P47902 AL592295.1-201ENST00000400984 884 ntBASIC18.43■□□□□ 0.54
CDX1P47902 YPEL1-202ENST00000403503 466 ntTSL 3 BASIC18.43■□□□□ 0.54
CDX1P47902 CSNK1G2-201ENST00000255641 2918 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
CDX1P47902 ARHGEF35-201ENST00000378115 2431 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
CDX1P47902 KCNS1-202ENST00000537075 2136 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
CDX1P47902 CCDC106-202ENST00000586790 2162 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
CDX1P47902 AC022211.4-201ENST00000625094 2161 ntBASIC18.42■□□□□ 0.54
CDX1P47902 WRNIP1-203ENST00000380771 2595 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
CDX1P47902 SOHLH1-202ENST00000425225 1411 ntAPPRIS ALT2 TSL 5 BASIC18.42■□□□□ 0.54
CDX1P47902 CIDEB-201ENST00000258807 2294 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
CDX1P47902 PEX26-202ENST00000399744 1672 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
CDX1P47902 SH3GLB2-203ENST00000372564 2982 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
CDX1P47902 SDHAF1-201ENST00000378887 1117 ntAPPRIS P1 BASIC18.42■□□□□ 0.54
CDX1P47902 NDUFA10-204ENST00000407129 699 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
CDX1P47902 TWF2-201ENST00000305533 1718 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
CDX1P47902 UPF3A-202ENST00000375299 2387 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
CDX1P47902 PLEK2-201ENST00000216446 1549 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
CDX1P47902 TTBK2-205ENST00000567274 1777 ntTSL 5 BASIC18.42■□□□□ 0.54
CDX1P47902 TMEM200B-202ENST00000521452 2501 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
CDX1P47902 LGALS9C-201ENST00000328114 1730 ntAPPRIS P2 TSL 1 (best) BASIC18.41■□□□□ 0.54
CDX1P47902 EVA1C-201ENST00000300255 1998 ntAPPRIS P3 TSL 1 (best) BASIC18.41■□□□□ 0.54
CDX1P47902 PNKP-201ENST00000322344 2041 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
CDX1P47902 KRT18P24-201ENST00000344739 1156 ntBASIC18.41■□□□□ 0.54
CDX1P47902 AC009299.2-201ENST00000482477 511 ntBASIC18.41■□□□□ 0.54
CDX1P47902 TK2-216ENST00000564917 1156 ntTSL 3 BASIC18.41■□□□□ 0.54
CDX1P47902 RAET1E-AS1-203ENST00000606915 1210 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
CDX1P47902 AC093323.1-201ENST00000307533 2311 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
CDX1P47902 MLST8-219ENST00000565250 1588 ntAPPRIS P3 TSL 3 BASIC18.41■□□□□ 0.54
CDX1P47902 LINGO3-201ENST00000585527 2241 ntAPPRIS P1 BASIC18.41■□□□□ 0.54
CDX1P47902 NKX2-3-202ENST00000622383 1986 ntTSL 5 BASIC18.41■□□□□ 0.54
CDX1P47902 LHX2-201ENST00000373615 2554 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CDX1P47902 ZNF74-204ENST00000405993 1839 ntAPPRIS ALT2 TSL 5 BASIC18.4■□□□□ 0.54
CDX1P47902 FBXO7-206ENST00000452138 1535 ntTSL 2 BASIC18.4■□□□□ 0.54
CDX1P47902 VGLL2-201ENST00000326274 2212 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CDX1P47902 PRTG-204ENST00000561292 833 ntTSL 3 BASIC18.4■□□□□ 0.54
CDX1P47902 TMEM170A-202ENST00000561878 1072 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CDX1P47902 AC009163.4-201ENST00000567194 530 ntAPPRIS P1 TSL 2 BASIC18.4■□□□□ 0.54
CDX1P47902 AL121906.1-201ENST00000606866 440 ntTSL 3 BASIC18.4■□□□□ 0.54
CDX1P47902 FBXL20-203ENST00000577399 1620 ntTSL 5 BASIC18.4■□□□□ 0.54
CDX1P47902 YWHAZ-205ENST00000395956 2974 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CDX1P47902 EGFL8-219ENST00000333845 1310 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CDX1P47902 STK25-234ENST00000535007 2459 ntTSL 2 BASIC18.4■□□□□ 0.54
CDX1P47902 TST-202ENST00000403892 1797 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CDX1P47902 SLC52A2-208ENST00000527078 1790 ntAPPRIS P1 TSL 5 BASIC18.4■□□□□ 0.54
CDX1P47902 LONP1-203ENST00000585374 2882 ntTSL 5 BASIC18.4■□□□□ 0.54
CDX1P47902 NFU1-203ENST00000410022 1467 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.54
CDX1P47902 R3HCC1-202ENST00000411463 1467 ntAPPRIS P5 TSL 5 BASIC18.39■□□□□ 0.54
CDX1P47902 TRIR-205ENST00000592273 783 ntTSL 3 BASIC18.39■□□□□ 0.53
CDX1P47902 TOMM40-203ENST00000426677 1725 ntAPPRIS P2 TSL 1 (best) BASIC18.39■□□□□ 0.53
CDX1P47902 DONSON-201ENST00000303071 2170 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CDX1P47902 SAV1-201ENST00000324679 3063 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CDX1P47902 ADGRB1-202ENST00000517894 6241 ntAPPRIS P1 TSL 5 BASIC18.39■□□□□ 0.53
CDX1P47902 HOMER3-201ENST00000221222 1384 ntAPPRIS ALT1 TSL 5 BASIC18.39■□□□□ 0.53
CDX1P47902 CRHR1-201ENST00000293493 2621 ntTSL 5 BASIC18.38■□□□□ 0.53
CDX1P47902 OSBPL10-204ENST00000438237 2624 ntAPPRIS ALT2 TSL 2 BASIC18.38■□□□□ 0.53
CDX1P47902 CTF1-201ENST00000279804 1664 ntAPPRIS P3 TSL 1 (best) BASIC18.38■□□□□ 0.53
CDX1P47902 TDRKH-206ENST00000440583 2296 ntTSL 5 BASIC18.38■□□□□ 0.53
CDX1P47902 SLC22A31-206ENST00000614943 1860 ntTSL 5 BASIC18.38■□□□□ 0.53
CDX1P47902 MXRA7-201ENST00000355797 5661 ntAPPRIS P4 TSL 2 BASIC18.38■□□□□ 0.53
CDX1P47902 CTAG1B-201ENST00000328435 748 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CDX1P47902 CTAG1A-202ENST00000599837 748 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CDX1P47902 MEIS2-207ENST00000557796 2666 ntTSL 5 BASIC18.38■□□□□ 0.53
CDX1P47902 ZNF837-201ENST00000427624 2038 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 20.9 ms