Protein–RNA interactions for Protein: Q92889

ERCC4, DNA repair endonuclease XPF, humanhuman

Predicted RBP Predictions only

Length 916 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC4Q92889 XPNPEP1-201ENST00000322238 2467 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
ERCC4Q92889 SRPX-206ENST00000544439 1842 ntAPPRIS ALT2 TSL 2 BASIC17.03■□□□□ 0.32
ERCC4Q92889 KCNH4-201ENST00000264661 3920 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
ERCC4Q92889 ARHGEF1-202ENST00000347545 3091 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
ERCC4Q92889 NMRAL1-201ENST00000283429 1376 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
ERCC4Q92889 FAM174A-201ENST00000312637 1356 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
ERCC4Q92889 ING4-202ENST00000396807 1393 ntAPPRIS ALT1 TSL 1 (best) BASIC17.02■□□□□ 0.32
ERCC4Q92889 ADAM33-201ENST00000350009 3480 ntAPPRIS ALT2 TSL 5 BASIC17.02■□□□□ 0.32
ERCC4Q92889 FAM103A1-201ENST00000304191 1568 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
ERCC4Q92889 TBC1D26-206ENST00000579428 1583 ntTSL 2 BASIC17.02■□□□□ 0.32
ERCC4Q92889 PLEKHD1-201ENST00000322564 4865 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
ERCC4Q92889 SUOX-201ENST00000266971 2364 ntAPPRIS P1 TSL 2 BASIC17.02■□□□□ 0.32
ERCC4Q92889 ZNF576-201ENST00000336564 2566 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
ERCC4Q92889 HCG27-201ENST00000383331 1720 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
ERCC4Q92889 SLC41A3-204ENST00000383598 2330 ntAPPRIS P3 TSL 2 BASIC17.02■□□□□ 0.32
ERCC4Q92889 ENDOV-206ENST00000518901 2549 ntTSL 2 BASIC17.02■□□□□ 0.32
ERCC4Q92889 ZBTB17-202ENST00000375743 2745 ntAPPRIS P3 TSL 1 (best) BASIC17.02■□□□□ 0.32
ERCC4Q92889 ATP6V0A4-201ENST00000310018 3135 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
ERCC4Q92889 RET-201ENST00000340058 4149 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.32
ERCC4Q92889 PLIN4-202ENST00000633942 6484 ntAPPRIS ALT2 TSL 5 BASIC17.02■□□□□ 0.32
ERCC4Q92889 FARP2-201ENST00000264042 4051 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
ERCC4Q92889 MBD1-201ENST00000269468 3259 ntAPPRIS P3 TSL 5 BASIC17.02■□□□□ 0.32
ERCC4Q92889 DBNDD1-203ENST00000392973 2689 ntTSL 2 BASIC17.02■□□□□ 0.32
ERCC4Q92889 SERINC2-206ENST00000536859 2072 ntTSL 2 BASIC17.02■□□□□ 0.32
ERCC4Q92889 RFX3-AS1-201ENST00000423112 552 ntTSL 3 BASIC17.02■□□□□ 0.32
ERCC4Q92889 AC241585.1-201ENST00000433527 519 ntBASIC17.02■□□□□ 0.32
ERCC4Q92889 IQCF3-204ENST00000446775 1241 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
ERCC4Q92889 AC006001.2-201ENST00000448096 393 ntTSL 3 BASIC17.02■□□□□ 0.32
ERCC4Q92889 PTPRG-AS1-205ENST00000475371 733 ntTSL 3 BASIC17.02■□□□□ 0.32
ERCC4Q92889 AC135586.1-201ENST00000539323 574 ntBASIC17.02■□□□□ 0.32
ERCC4Q92889 AJ003147.2-201ENST00000576468 629 ntTSL 3 BASIC17.02■□□□□ 0.32
ERCC4Q92889 INO80C-210ENST00000590757 595 ntTSL 2 BASIC17.02■□□□□ 0.32
ERCC4Q92889 AC107373.2-201ENST00000607735 490 ntBASIC17.02■□□□□ 0.32
ERCC4Q92889 SMTN-223ENST00000619644 3227 ntTSL 2 BASIC17.02■□□□□ 0.32
ERCC4Q92889 KBTBD12-202ENST00000405109 5727 ntAPPRIS P1 TSL 5 BASIC17.02■□□□□ 0.32
ERCC4Q92889 UBXN11-206ENST00000374222 2043 ntAPPRIS P4 TSL 5 BASIC17.02■□□□□ 0.32
ERCC4Q92889 KIF22-208ENST00000569382 2020 ntTSL 5 BASIC17.02■□□□□ 0.32
ERCC4Q92889 CDIP1-205ENST00000563332 2774 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
ERCC4Q92889 GLIS2-201ENST00000262366 4469 ntAPPRIS P1 TSL 2 BASIC17.02■□□□□ 0.31
ERCC4Q92889 SCGN-202ENST00000377961 1447 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
ERCC4Q92889 CAMSAP1-203ENST00000409386 5730 ntAPPRIS ALT2 TSL 5 BASIC17.02■□□□□ 0.31
ERCC4Q92889 AC097374.1-201ENST00000568768 6624 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
ERCC4Q92889 PRPF38B-202ENST00000370022 1591 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
ERCC4Q92889 GNAS-215ENST00000371102 3438 ntTSL 5 BASIC17.02■□□□□ 0.31
ERCC4Q92889 CDKN1A-208ENST00000615513 2102 ntAPPRIS P1 TSL 2 BASIC17.02■□□□□ 0.31
ERCC4Q92889 RSPO3-201ENST00000356698 2697 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
ERCC4Q92889 SGK1-205ENST00000413996 2686 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
ERCC4Q92889 ACAN-209ENST00000617301 8669 ntAPPRIS ALT2 TSL 5 BASIC17.02■□□□□ 0.31
ERCC4Q92889 GINS3-203ENST00000426538 1728 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
ERCC4Q92889 NAA60-203ENST00000414063 2619 ntAPPRIS P1 TSL 2 BASIC17.01■□□□□ 0.31
ERCC4Q92889 SLC35C2-201ENST00000243896 2447 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
ERCC4Q92889 ITGB2-206ENST00000397852 2769 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
ERCC4Q92889 HDAC11-213ENST00000437379 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
ERCC4Q92889 FLOT2-210ENST00000585169 2585 ntAPPRIS ALT1 TSL 5 BASIC17.01■□□□□ 0.31
ERCC4Q92889 AC093525.8-201ENST00000624099 1342 ntBASIC17.01■□□□□ 0.31
ERCC4Q92889 CSPG4P12-202ENST00000559989 7790 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
ERCC4Q92889 RBL1-201ENST00000344359 3225 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
ERCC4Q92889 EVL-201ENST00000392920 1978 ntAPPRIS P3 TSL 1 (best) BASIC17.01■□□□□ 0.31
ERCC4Q92889 HCST-201ENST00000246551 613 ntAPPRIS P3 TSL 1 (best) BASIC17.01■□□□□ 0.31
ERCC4Q92889 GGCT-205ENST00000409436 954 ntTSL 3 BASIC17.01■□□□□ 0.31
ERCC4Q92889 AC106886.2-201ENST00000483578 883 ntTSL 5 BASIC17.01■□□□□ 0.31
ERCC4Q92889 LSM1-203ENST00000520755 975 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
ERCC4Q92889 AC018558.2-201ENST00000566562 480 ntTSL 3 BASIC17.01■□□□□ 0.31
ERCC4Q92889 AC104794.3-201ENST00000566840 1248 ntBASIC17.01■□□□□ 0.31
ERCC4Q92889 AC087645.2-202ENST00000586583 643 ntTSL 4 BASIC17.01■□□□□ 0.31
ERCC4Q92889 LINC01703-202ENST00000602806 595 ntTSL 3 BASIC17.01■□□□□ 0.31
ERCC4Q92889 GOLGA2-212ENST00000609374 2973 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
ERCC4Q92889 AL662799.1-202ENST00000614205 422 ntBASIC17.01■□□□□ 0.31
ERCC4Q92889 ZFP28-204ENST00000591844 3475 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
ERCC4Q92889 ZMYND10-202ENST00000360165 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC17.01■□□□□ 0.31
ERCC4Q92889 STK32B-201ENST00000282908 3582 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
ERCC4Q92889 TPRX1-202ENST00000535759 2059 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
ERCC4Q92889 TBC1D24-207ENST00000627285 4382 ntAPPRIS P3 TSL 5 BASIC17.01■□□□□ 0.31
ERCC4Q92889 CNKSR2-203ENST00000425654 5668 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
ERCC4Q92889 TPGS2-202ENST00000383056 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
ERCC4Q92889 ITGB4-203ENST00000450894 5645 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
ERCC4Q92889 PCDHGA3-203ENST00000619750 2695 ntAPPRIS ALT2 BASIC17.01■□□□□ 0.31
ERCC4Q92889 AC018665.1-201ENST00000622927 1362 ntBASIC17.01■□□□□ 0.31
ERCC4Q92889 MEFV-201ENST00000219596 3499 ntAPPRIS P2 TSL 1 (best) BASIC17.01■□□□□ 0.31
ERCC4Q92889 SLC34A2-203ENST00000504570 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
ERCC4Q92889 SHROOM1-208ENST00000617339 3638 ntAPPRIS ALT2 TSL 5 BASIC17.01■□□□□ 0.31
ERCC4Q92889 WNT7B-201ENST00000339464 3919 ntAPPRIS P2 TSL 1 (best) BASIC17.01■□□□□ 0.31
ERCC4Q92889 ZNF785-201ENST00000395216 3282 ntAPPRIS P2 TSL 1 (best) BASIC17.01■□□□□ 0.31
ERCC4Q92889 DDX41-208ENST00000507955 2607 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
ERCC4Q92889 UMODL1-AS1-201ENST00000329015 2141 ntTSL 1 (best) BASIC17■□□□□ 0.31
ERCC4Q92889 KLHL13-207ENST00000540167 3396 ntTSL 2 BASIC17■□□□□ 0.31
ERCC4Q92889 TCAIM-201ENST00000342649 3687 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
ERCC4Q92889 PPIL2-202ENST00000398831 2574 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
ERCC4Q92889 KRT18P28-201ENST00000453838 1332 ntBASIC17■□□□□ 0.31
ERCC4Q92889 STIP1-203ENST00000358794 2743 ntTSL 1 (best) BASIC17■□□□□ 0.31
ERCC4Q92889 MCHR1-201ENST00000249016 2851 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
ERCC4Q92889 ZNF362-205ENST00000539719 3106 ntAPPRIS P1 TSL 5 BASIC17■□□□□ 0.31
ERCC4Q92889 SLC2A11-223ENST00000611880 3264 ntTSL 2 BASIC17■□□□□ 0.31
ERCC4Q92889 EXTL1-201ENST00000374280 4015 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
ERCC4Q92889 POP5-202ENST00000357500 801 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
ERCC4Q92889 LBH-203ENST00000404397 543 ntTSL 4 BASIC17■□□□□ 0.31
ERCC4Q92889 PMS2P2-201ENST00000425039 1128 ntBASIC17■□□□□ 0.31
ERCC4Q92889 RNASE10-202ENST00000430083 1172 ntTSL 2 BASIC17■□□□□ 0.31
ERCC4Q92889 AL845321.1-202ENST00000432011 786 ntTSL 5 BASIC17■□□□□ 0.31
ERCC4Q92889 AL353779.1-201ENST00000434793 351 ntBASIC17■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 50.8 ms