Protein–RNA interactions for Protein: Q6NUP7

PPP4R4, Serine/threonine-protein phosphatase 4 regulatory subunit 4, humanhuman

Predictions only

Length 873 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PPP4R4Q6NUP7 TRMT112-206ENST00000544844 1106 ntAPPRIS P3 TSL 1 (best) BASIC14.43□□□□□ -0.1
PPP4R4Q6NUP7 AL079307.3-201ENST00000556114 283 ntBASIC14.43□□□□□ -0.1
PPP4R4Q6NUP7 NDRG4-247ENST00000568640 1281 ntTSL 2 BASIC14.43□□□□□ -0.1
PPP4R4Q6NUP7 PRR29-209ENST00000582540 967 ntTSL 2 BASIC14.43□□□□□ -0.1
PPP4R4Q6NUP7 AC008481.3-201ENST00000585656 727 ntAPPRIS P1 TSL 5 BASIC14.43□□□□□ -0.1
PPP4R4Q6NUP7 AC008894.2-201ENST00000597983 2987 ntTSL 2 BASIC14.43□□□□□ -0.1
PPP4R4Q6NUP7 AL136531.2-202ENST00000617804 573 ntAPPRIS P1 TSL 4 BASIC14.43□□□□□ -0.1
PPP4R4Q6NUP7 SIMC1-205ENST00000443967 3572 ntAPPRIS ALT2 TSL 1 (best) BASIC14.43□□□□□ -0.1
PPP4R4Q6NUP7 GPC6-201ENST00000377047 6467 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
PPP4R4Q6NUP7 RAP1GAP-211ENST00000495204 2489 ntAPPRIS ALT2 TSL 1 (best) BASIC14.43□□□□□ -0.1
PPP4R4Q6NUP7 REPS1-221ENST00000626459 3665 ntTSL 5 BASIC14.43□□□□□ -0.1
PPP4R4Q6NUP7 ORMDL3-202ENST00000394169 2230 ntAPPRIS P1 TSL 2 BASIC14.43□□□□□ -0.1
PPP4R4Q6NUP7 GFAP-214ENST00000588735 6538 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
PPP4R4Q6NUP7 IKZF1-202ENST00000343574 5925 ntTSL 5 BASIC14.43□□□□□ -0.1
PPP4R4Q6NUP7 BLOC1S6-212ENST00000566753 1996 ntTSL 2 BASIC14.43□□□□□ -0.1
PPP4R4Q6NUP7 UBE3A-228ENST00000638155 9131 ntAPPRIS P3 TSL 5 BASIC14.43□□□□□ -0.1
PPP4R4Q6NUP7 PDGFRB-201ENST00000261799 5717 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
PPP4R4Q6NUP7 DNAJC7-201ENST00000316603 1468 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
PPP4R4Q6NUP7 CMTR2-201ENST00000338099 4869 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
PPP4R4Q6NUP7 HDAC9-208ENST00000417496 2524 ntTSL 2 BASIC14.43□□□□□ -0.1
PPP4R4Q6NUP7 KCNC2-202ENST00000350228 3344 ntAPPRIS ALT2 TSL 2 BASIC14.43□□□□□ -0.1
PPP4R4Q6NUP7 PEX5L-215ENST00000485199 2992 ntAPPRIS ALT2 TSL 1 (best) BASIC14.43□□□□□ -0.1
PPP4R4Q6NUP7 FGR-203ENST00000374005 2729 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
PPP4R4Q6NUP7 PDE4A-209ENST00000592685 2707 ntAPPRIS ALT2 TSL 1 (best) BASIC14.43□□□□□ -0.1
PPP4R4Q6NUP7 AC105206.1-202ENST00000314927 2368 ntBASIC14.42□□□□□ -0.1
PPP4R4Q6NUP7 C1orf228-219ENST00000535358 1685 ntAPPRIS P2 TSL 5 BASIC14.42□□□□□ -0.1
PPP4R4Q6NUP7 AC138894.1-201ENST00000635887 2824 ntTSL 5 BASIC14.42□□□□□ -0.1
PPP4R4Q6NUP7 RASGEF1A-202ENST00000374459 3264 ntAPPRIS ALT2 TSL 2 BASIC14.42□□□□□ -0.1
PPP4R4Q6NUP7 AC090099.1-203ENST00000527059 2945 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
PPP4R4Q6NUP7 SCUBE2-201ENST00000309263 3727 ntTSL 5 BASIC14.42□□□□□ -0.1
PPP4R4Q6NUP7 SAMD4A-201ENST00000251091 6565 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
PPP4R4Q6NUP7 ACKR3-201ENST00000272928 2203 ntAPPRIS P1 TSL 2 BASIC14.42□□□□□ -0.1
PPP4R4Q6NUP7 DTD2-202ENST00000356180 1400 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
PPP4R4Q6NUP7 CASQ1-201ENST00000368078 1897 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
PPP4R4Q6NUP7 FOXD4L5-201ENST00000377420 3109 ntAPPRIS P1 BASIC14.42□□□□□ -0.1
PPP4R4Q6NUP7 AC109583.3-201ENST00000641183 3128 ntAPPRIS P1 BASIC14.42□□□□□ -0.1
PPP4R4Q6NUP7 SLC4A7-212ENST00000446700 4000 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
PPP4R4Q6NUP7 CASC2-202ENST00000426021 3232 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
PPP4R4Q6NUP7 POLL-204ENST00000370168 1536 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
PPP4R4Q6NUP7 DDX17-202ENST00000396821 4791 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
PPP4R4Q6NUP7 C7orf57-203ENST00000430738 2056 ntTSL 5 BASIC14.42□□□□□ -0.1
PPP4R4Q6NUP7 ARFGAP1-212ENST00000519604 3191 ntTSL 2 BASIC14.42□□□□□ -0.1
PPP4R4Q6NUP7 AL136982.4-201ENST00000437689 1740 ntBASIC14.42□□□□□ -0.1
PPP4R4Q6NUP7 THUMPD3-AS1-202ENST00000468186 3253 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
PPP4R4Q6NUP7 DKKL1-201ENST00000221498 1222 ntAPPRIS P2 TSL 1 (best) BASIC14.42□□□□□ -0.1
PPP4R4Q6NUP7 DUPD1-201ENST00000338487 663 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
PPP4R4Q6NUP7 PDSS2-201ENST00000369031 1236 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
PPP4R4Q6NUP7 CIB3-202ENST00000379859 467 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
PPP4R4Q6NUP7 EVA1A-203ENST00000410010 696 ntAPPRIS ALT2 TSL 5 BASIC14.42□□□□□ -0.1
PPP4R4Q6NUP7 RN7SL618P-201ENST00000477850 296 ntBASIC14.42□□□□□ -0.1
PPP4R4Q6NUP7 TIMM17B-208ENST00000495490 939 ntTSL 5 BASIC14.42□□□□□ -0.1
PPP4R4Q6NUP7 AC136601.1-201ENST00000521803 666 ntTSL 3 BASIC14.42□□□□□ -0.1
PPP4R4Q6NUP7 BANF1P1-201ENST00000553684 263 ntBASIC14.42□□□□□ -0.1
PPP4R4Q6NUP7 GZMH-203ENST00000557220 520 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
PPP4R4Q6NUP7 COQ9-214ENST00000567933 882 ntTSL 3 BASIC14.42□□□□□ -0.1
PPP4R4Q6NUP7 ZNF586-205ENST00000598885 578 ntTSL 4 BASIC14.42□□□□□ -0.1
PPP4R4Q6NUP7 R3HDM2-204ENST00000402412 4372 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
PPP4R4Q6NUP7 BAG2-201ENST00000370693 6651 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
PPP4R4Q6NUP7 TARBP2-203ENST00000456234 1368 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
PPP4R4Q6NUP7 MCC-201ENST00000302475 8257 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
PPP4R4Q6NUP7 ADAMTS13-205ENST00000371916 4330 ntTSL 5 BASIC14.42□□□□□ -0.1
PPP4R4Q6NUP7 CREB3L4-202ENST00000368600 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
PPP4R4Q6NUP7 AC023090.2-201ENST00000625182 2110 ntBASIC14.42□□□□□ -0.1
PPP4R4Q6NUP7 NCKAP5L-201ENST00000335999 4900 ntAPPRIS P1 TSL 5 BASIC14.42□□□□□ -0.1
PPP4R4Q6NUP7 CLCN7-201ENST00000262318 3717 ntTSL 5 BASIC14.42□□□□□ -0.1
PPP4R4Q6NUP7 CBFA2T3-201ENST00000268679 4477 ntAPPRIS P4 TSL 1 (best) BASIC14.42□□□□□ -0.1
PPP4R4Q6NUP7 NEU3-201ENST00000294064 6728 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
PPP4R4Q6NUP7 AC055811.4-201ENST00000624039 1754 ntBASIC14.42□□□□□ -0.1
PPP4R4Q6NUP7 ANO9-201ENST00000332826 2542 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
PPP4R4Q6NUP7 CHD1-212ENST00000614616 8095 ntAPPRIS P1 TSL 5 BASIC14.42□□□□□ -0.1
PPP4R4Q6NUP7 C9orf152-201ENST00000400613 2717 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
PPP4R4Q6NUP7 GFOD2-203ENST00000602377 1991 ntTSL 4 BASIC14.42□□□□□ -0.1
PPP4R4Q6NUP7 ZMYM3-206ENST00000373988 6021 ntAPPRIS ALT1 TSL 5 BASIC14.42□□□□□ -0.1
PPP4R4Q6NUP7 NFATC1-205ENST00000427363 2832 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
PPP4R4Q6NUP7 RAD51C-215ENST00000583539 1319 ntAPPRIS ALT2 TSL 2 BASIC14.41□□□□□ -0.1
PPP4R4Q6NUP7 TMCC3-201ENST00000261226 5877 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
PPP4R4Q6NUP7 SFSWAP-201ENST00000261674 3246 ntAPPRIS P3 TSL 1 (best) BASIC14.41□□□□□ -0.1
PPP4R4Q6NUP7 ZNF397-201ENST00000261333 1419 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
PPP4R4Q6NUP7 MDM2-209ENST00000393412 1404 ntTSL 5 BASIC14.41□□□□□ -0.1
PPP4R4Q6NUP7 FBXL16-201ENST00000324361 3411 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
PPP4R4Q6NUP7 TBX10-201ENST00000335385 1548 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
PPP4R4Q6NUP7 CLCNKB-204ENST00000619181 1544 ntTSL 5 BASIC14.41□□□□□ -0.1
PPP4R4Q6NUP7 FP325330.2-201ENST00000624219 5630 ntBASIC14.41□□□□□ -0.1
PPP4R4Q6NUP7 PRNP-201ENST00000379440 2657 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
PPP4R4Q6NUP7 PAPSS2-201ENST00000361175 3949 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
PPP4R4Q6NUP7 SLC25A29-208ENST00000554912 5169 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
PPP4R4Q6NUP7 ZNF32-AS3-201ENST00000458063 1932 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
PPP4R4Q6NUP7 ARMCX6-208ENST00000539247 1928 ntAPPRIS P1 TSL 4 BASIC14.41□□□□□ -0.1
PPP4R4Q6NUP7 RIC8B-202ENST00000392837 5135 ntAPPRIS ALT2 TSL 5 BASIC14.41□□□□□ -0.1
PPP4R4Q6NUP7 ZBTB7B-207ENST00000535420 3777 ntAPPRIS P3 TSL 5 BASIC14.41□□□□□ -0.1
PPP4R4Q6NUP7 ITGB2-208ENST00000397857 2813 ntAPPRIS P1 TSL 5 BASIC14.41□□□□□ -0.1
PPP4R4Q6NUP7 ZCCHC7-209ENST00000534928 2828 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
PPP4R4Q6NUP7 ITPK1-207ENST00000555495 3035 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
PPP4R4Q6NUP7 MAP2K1-201ENST00000307102 3410 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
PPP4R4Q6NUP7 LANCL3-202ENST00000378621 10298 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
PPP4R4Q6NUP7 CBX2-201ENST00000269399 1061 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
PPP4R4Q6NUP7 CHIA-203ENST00000353665 1214 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
PPP4R4Q6NUP7 C1orf43-203ENST00000368516 872 ntTSL 2 BASIC14.41□□□□□ -0.1
PPP4R4Q6NUP7 GUK1-210ENST00000391865 990 ntAPPRIS ALT1 TSL 1 (best) BASIC14.41□□□□□ -0.1
PPP4R4Q6NUP7 RPL37AP1-201ENST00000412502 279 ntBASIC14.41□□□□□ -0.1
Retrieved 100 of 98,524 protein–RNA pairs in 31.4 ms