Protein–RNA interactions for Protein: O00203

AP3B1, AP-3 complex subunit beta-1, humanhuman

Predictions only

Length 1,094 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AP3B1O00203 DYRK1A-203ENST00000398956 1590 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
AP3B1O00203 CYB5R2-204ENST00000524790 1338 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
AP3B1O00203 FGFR3-203ENST00000352904 3733 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
AP3B1O00203 CSGALNACT1-211ENST00000522854 1990 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
AP3B1O00203 POU5F1-204ENST00000471529 1723 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
AP3B1O00203 SPRED1-201ENST00000299084 7780 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
AP3B1O00203 POU2F2-207ENST00000529067 2657 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
AP3B1O00203 ZNF74-209ENST00000611540 3714 ntAPPRIS P2 TSL 2 BASIC15.14■□□□□ 0.01
AP3B1O00203 ARAP1-203ENST00000393605 4778 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
AP3B1O00203 ENOSF1-209ENST00000580982 1397 ntTSL 5 BASIC15.14■□□□□ 0.01
AP3B1O00203 CCT3-201ENST00000295688 2150 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
AP3B1O00203 TBC1D24-205ENST00000567020 6673 ntAPPRIS P3 TSL 1 (best) BASIC15.14■□□□□ 0.01
AP3B1O00203 EVC2-201ENST00000310917 4828 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
AP3B1O00203 HSPA7-201ENST00000445535 1927 ntBASIC15.14■□□□□ 0.01
AP3B1O00203 ATL3-203ENST00000538786 1920 ntAPPRIS ALT2 TSL 2 BASIC15.14■□□□□ 0.01
AP3B1O00203 VEZF1-202ENST00000581208 2321 ntAPPRIS P3 TSL 1 (best) BASIC15.14■□□□□ 0.01
AP3B1O00203 PWP2-201ENST00000291576 3297 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
AP3B1O00203 ZFP41-203ENST00000520584 3284 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
AP3B1O00203 SLC2A13-201ENST00000280871 7003 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
AP3B1O00203 GSTCD-206ENST00000507281 2091 ntTSL 5 BASIC15.14■□□□□ 0.01
AP3B1O00203 CCDC140-201ENST00000295226 1699 ntAPPRIS P2 TSL 1 (best) BASIC15.14■□□□□ 0.01
AP3B1O00203 RTN4IP1-201ENST00000369063 1682 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
AP3B1O00203 LINC01864-201ENST00000587218 1661 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
AP3B1O00203 RAB41-201ENST00000276066 1071 ntAPPRIS P2 TSL 1 (best) BASIC15.14■□□□□ 0.01
AP3B1O00203 TMEM41A-201ENST00000296254 1060 ntTSL 2 BASIC15.14■□□□□ 0.01
AP3B1O00203 RAB41-202ENST00000374473 1074 ntAPPRIS ALT2 TSL 5 BASIC15.14■□□□□ 0.01
AP3B1O00203 XAGE1A-203ENST00000375602 614 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
AP3B1O00203 XAGE1B-203ENST00000375616 614 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
AP3B1O00203 AC098850.1-201ENST00000419919 790 ntBASIC15.14■□□□□ 0.01
AP3B1O00203 PRAP1-201ENST00000433452 971 ntAPPRIS P3 TSL 1 (best) BASIC15.14■□□□□ 0.01
AP3B1O00203 CR769775.1-201ENST00000443347 931 ntTSL 3 BASIC15.14■□□□□ 0.01
AP3B1O00203 HMGB2-203ENST00000446922 1175 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
AP3B1O00203 HYAL1-208ENST00000457214 1084 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
AP3B1O00203 SHF-202ENST00000458022 1163 ntAPPRIS ALT2 TSL 2 BASIC15.14■□□□□ 0.01
AP3B1O00203 CDK4-206ENST00000549606 558 ntTSL 2 BASIC15.14■□□□□ 0.01
AP3B1O00203 AC140912.1-201ENST00000577171 1054 ntBASIC15.14■□□□□ 0.01
AP3B1O00203 ZNF180-204ENST00000586637 1023 ntTSL 5 BASIC15.14■□□□□ 0.01
AP3B1O00203 LINC02560-201ENST00000596379 459 ntBASIC15.14■□□□□ 0.01
AP3B1O00203 ATF5-205ENST00000600336 682 ntTSL 2 BASIC15.14■□□□□ 0.01
AP3B1O00203 TPTE2P2-205ENST00000606711 505 ntTSL 5 BASIC15.14■□□□□ 0.01
AP3B1O00203 AL096865.1-201ENST00000606796 927 ntBASIC15.14■□□□□ 0.01
AP3B1O00203 MIR6074-201ENST00000612054 107 ntBASIC15.14■□□□□ 0.01
AP3B1O00203 TRIM25-201ENST00000316881 5734 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
AP3B1O00203 HNRNPR-212ENST00000606561 1837 ntTSL 2 BASIC15.14■□□□□ 0.01
AP3B1O00203 ZNF655-212ENST00000424881 4666 ntAPPRIS ALT2 TSL 2 BASIC15.14■□□□□ 0.01
AP3B1O00203 UBE2D1-201ENST00000373910 2659 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
AP3B1O00203 SLC6A20-204ENST00000456124 2662 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
AP3B1O00203 YTHDC1-202ENST00000355665 3244 ntAPPRIS P3 TSL 1 (best) BASIC15.14■□□□□ 0.01
AP3B1O00203 DNAJB1-201ENST00000254322 2264 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
AP3B1O00203 MCM3AP-AS1-203ENST00000421927 2280 ntTSL 2 BASIC15.14■□□□□ 0.01
AP3B1O00203 PUS1-202ENST00000376649 4094 ntAPPRIS P3 TSL 1 (best) BASIC15.14■□□□□ 0.01
AP3B1O00203 DMTN-201ENST00000265800 2554 ntTSL 5 BASIC15.14■□□□□ 0.01
AP3B1O00203 DMTN-207ENST00000517305 2551 ntTSL 5 BASIC15.14■□□□□ 0.01
AP3B1O00203 SLC22A12-203ENST00000377572 2887 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
AP3B1O00203 EID3-201ENST00000527879 1467 ntAPPRIS P1 BASIC15.14■□□□□ 0.01
AP3B1O00203 AC003102.2-201ENST00000589195 1469 ntBASIC15.14■□□□□ 0.01
AP3B1O00203 UNC5B-202ENST00000373192 6451 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
AP3B1O00203 CTBP1-AS2-205ENST00000578730 2757 ntTSL 2 BASIC15.13■□□□□ 0.01
AP3B1O00203 PDPK1-202ENST00000342085 7241 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
AP3B1O00203 RIOX2-202ENST00000360258 2232 ntAPPRIS P3 TSL 1 (best) BASIC15.13■□□□□ 0.01
AP3B1O00203 SLC25A3-217ENST00000552981 1351 ntAPPRIS ALT1 TSL 1 (best) BASIC15.13■□□□□ 0.01
AP3B1O00203 BCS1L-203ENST00000392110 1525 ntAPPRIS P1 TSL 2 BASIC15.13■□□□□ 0.01
AP3B1O00203 EIF4G1-218ENST00000434061 5026 ntTSL 2 BASIC15.13■□□□□ 0.01
AP3B1O00203 LINC00094-204ENST00000599836 1689 ntAPPRIS P5 BASIC15.13■□□□□ 0.01
AP3B1O00203 SRSF8-201ENST00000587424 4028 ntAPPRIS P1 BASIC15.13■□□□□ 0.01
AP3B1O00203 VPS36-207ENST00000611132 4607 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
AP3B1O00203 SELPLG-201ENST00000228463 1704 ntAPPRIS ALT2 TSL 2 BASIC15.13■□□□□ 0.01
AP3B1O00203 SPIDR-201ENST00000297423 3988 ntAPPRIS P3 TSL 1 (best) BASIC15.13■□□□□ 0.01
AP3B1O00203 NCR3-201ENST00000340027 1042 ntAPPRIS P3 TSL 1 (best) BASIC15.13■□□□□ 0.01
AP3B1O00203 SYCE1-202ENST00000343131 1113 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
AP3B1O00203 EPHA2-201ENST00000358432 3964 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
AP3B1O00203 FANK1-204ENST00000368695 1296 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
AP3B1O00203 PTTG1-202ENST00000393964 1070 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
AP3B1O00203 PSMD13-203ENST00000431206 1591 ntTSL 2 BASIC15.13■□□□□ 0.01
AP3B1O00203 ELK1P1-201ENST00000485699 580 ntBASIC15.13■□□□□ 0.01
AP3B1O00203 TCF7-218ENST00000520958 1408 ntTSL 2 BASIC15.13■□□□□ 0.01
AP3B1O00203 API5-211ENST00000534695 560 ntTSL 5 BASIC15.13■□□□□ 0.01
AP3B1O00203 VPS18-202ENST00000558474 873 ntTSL 3 BASIC15.13■□□□□ 0.01
AP3B1O00203 CHCHD2P3-201ENST00000603038 451 ntBASIC15.13■□□□□ 0.01
AP3B1O00203 ATP8B3-201ENST00000310127 5095 ntAPPRIS P3 TSL 1 (best) BASIC15.13■□□□□ 0.01
AP3B1O00203 TPGS2-201ENST00000334295 4030 ntAPPRIS P3 TSL 1 (best) BASIC15.13■□□□□ 0.01
AP3B1O00203 MUM1-201ENST00000415183 2837 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
AP3B1O00203 CEP295NL-201ENST00000322630 2090 ntTSL 2 BASIC15.13■□□□□ 0.01
AP3B1O00203 EDIL3-201ENST00000296591 4727 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
AP3B1O00203 SRRT-217ENST00000618411 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
AP3B1O00203 TLN1-201ENST00000314888 8823 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
AP3B1O00203 CDK2AP1-205ENST00000542174 1812 ntTSL 2 BASIC15.13■□□□□ 0.01
AP3B1O00203 PYGM-202ENST00000377432 2611 ntTSL 2 BASIC15.13■□□□□ 0.01
AP3B1O00203 ILF2-201ENST00000361891 1659 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
AP3B1O00203 NDOR1-202ENST00000371521 2497 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
AP3B1O00203 SLC7A4-202ENST00000403586 2307 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
AP3B1O00203 GOPC-201ENST00000052569 4590 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
AP3B1O00203 FKBP5-201ENST00000357266 3772 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
AP3B1O00203 KIAA1191-201ENST00000298569 2991 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
AP3B1O00203 UNQ6494-202ENST00000617436 2163 ntTSL 2 BASIC15.12■□□□□ 0.01
AP3B1O00203 SLC35G3-201ENST00000297307 2004 ntAPPRIS P1 BASIC15.12■□□□□ 0.01
AP3B1O00203 ARHGEF3-212ENST00000495373 2024 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
AP3B1O00203 P2RX5-207ENST00000551178 1863 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
AP3B1O00203 COQ8A-203ENST00000366779 5523 ntAPPRIS P1 TSL 2 BASIC15.12■□□□□ 0.01
AP3B1O00203 TMEM132E-203ENST00000631683 4379 ntAPPRIS P2 TSL 5 BASIC15.12■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 64.9 ms