Protein–RNA interactions for Protein: Q6ZMZ3

SYNE3, Nesprin-3, humanhuman

Predictions only

Length 975 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3Q6ZMZ3 SNRNP27-202ENST00000409116 1339 ntTSL 5 BASIC17.67■□□□□ 0.42
SYNE3Q6ZMZ3 TLX1NB-202ENST00000445873 1862 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
SYNE3Q6ZMZ3 TMEM40-204ENST00000435218 1547 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
SYNE3Q6ZMZ3 FAM149A-202ENST00000356371 2997 ntAPPRIS ALT2 TSL 5 BASIC17.67■□□□□ 0.42
SYNE3Q6ZMZ3 APBB1-219ENST00000608704 2095 ntTSL 5 BASIC17.67■□□□□ 0.42
SYNE3Q6ZMZ3 AL136379.1-201ENST00000623471 2642 ntBASIC17.67■□□□□ 0.42
SYNE3Q6ZMZ3 FDFT1-202ENST00000443614 1393 ntTSL 2 BASIC17.66■□□□□ 0.42
SYNE3Q6ZMZ3 CBLN4-201ENST00000064571 3024 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
SYNE3Q6ZMZ3 SPHK2-210ENST00000599748 2683 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
SYNE3Q6ZMZ3 RTKN-202ENST00000272430 2142 ntAPPRIS ALT1 TSL 1 (best) BASIC17.66■□□□□ 0.42
SYNE3Q6ZMZ3 TMEM41B-204ENST00000528080 3968 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
SYNE3Q6ZMZ3 PSMD13-215ENST00000621534 1572 ntTSL 5 BASIC17.66■□□□□ 0.42
SYNE3Q6ZMZ3 MFSD13A-201ENST00000238936 2852 ntAPPRIS P1 TSL 5 BASIC17.66■□□□□ 0.42
SYNE3Q6ZMZ3 TMEM170A-207ENST00000569540 2331 ntTSL 2 BASIC17.66■□□□□ 0.42
SYNE3Q6ZMZ3 CICP14-201ENST00000629111 2732 ntBASIC17.66■□□□□ 0.42
SYNE3Q6ZMZ3 ZMYND11-208ENST00000397962 2150 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
SYNE3Q6ZMZ3 ATP6AP2-211ENST00000636196 1403 ntAPPRIS ALT2 TSL 5 BASIC17.66■□□□□ 0.42
SYNE3Q6ZMZ3 TP73-213ENST00000604479 1623 ntTSL 5 BASIC17.66■□□□□ 0.42
SYNE3Q6ZMZ3 DDX49-201ENST00000247003 1830 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
SYNE3Q6ZMZ3 ERG28-201ENST00000256319 2633 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
SYNE3Q6ZMZ3 GABARAPL2-201ENST00000037243 1002 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
SYNE3Q6ZMZ3 NGDN-202ENST00000408901 1143 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
SYNE3Q6ZMZ3 KRT43P-201ENST00000434019 910 ntBASIC17.66■□□□□ 0.42
SYNE3Q6ZMZ3 SIRPB2-203ENST00000444444 884 ntTSL 2 BASIC17.66■□□□□ 0.42
SYNE3Q6ZMZ3 AC095060.1-201ENST00000502455 549 ntTSL 4 BASIC17.66■□□□□ 0.42
SYNE3Q6ZMZ3 USP32P1-208ENST00000506594 1164 ntBASIC17.66■□□□□ 0.42
SYNE3Q6ZMZ3 AC106760.1-201ENST00000508690 800 ntBASIC17.66■□□□□ 0.42
SYNE3Q6ZMZ3 LINC01595-201ENST00000555406 639 ntTSL 3 BASIC17.66■□□□□ 0.42
SYNE3Q6ZMZ3 AP000439.4-201ENST00000567742 664 ntTSL 3 BASIC17.66■□□□□ 0.42
SYNE3Q6ZMZ3 EGLN2-209ENST00000594140 991 ntTSL 2 BASIC17.66■□□□□ 0.42
SYNE3Q6ZMZ3 FAM66A-202ENST00000602658 546 ntTSL 5 BASIC17.66■□□□□ 0.42
SYNE3Q6ZMZ3 ANXA2R-202ENST00000616064 1265 ntAPPRIS P1 BASIC17.66■□□□□ 0.42
SYNE3Q6ZMZ3 FAM32A-201ENST00000263384 1455 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
SYNE3Q6ZMZ3 OTUD6A-201ENST00000338352 1689 ntAPPRIS P1 BASIC17.66■□□□□ 0.42
SYNE3Q6ZMZ3 ZNF485-201ENST00000361807 2054 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
SYNE3Q6ZMZ3 WDR25-204ENST00000554175 2055 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
SYNE3Q6ZMZ3 CDC42EP4-202ENST00000439510 2879 ntTSL 2 BASIC17.66■□□□□ 0.42
SYNE3Q6ZMZ3 EFHC1-212ENST00000635984 3293 ntTSL 5 BASIC17.66■□□□□ 0.42
SYNE3Q6ZMZ3 PCNX4-203ENST00000406854 4666 ntAPPRIS ALT2 TSL 5 BASIC17.66■□□□□ 0.42
SYNE3Q6ZMZ3 KLC4-204ENST00000453940 1945 ntTSL 2 BASIC17.66■□□□□ 0.42
SYNE3Q6ZMZ3 OXA1L-201ENST00000285848 1719 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
SYNE3Q6ZMZ3 CKMT2-201ENST00000254035 1512 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
SYNE3Q6ZMZ3 OXTR-201ENST00000316793 4364 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
SYNE3Q6ZMZ3 PPP6R1-203ENST00000587283 2953 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
SYNE3Q6ZMZ3 IMPDH1-203ENST00000354269 2580 ntTSL 2 BASIC17.66■□□□□ 0.42
SYNE3Q6ZMZ3 LINC00552-201ENST00000625151 2579 ntBASIC17.66■□□□□ 0.42
SYNE3Q6ZMZ3 HVCN1-202ENST00000356742 2189 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
SYNE3Q6ZMZ3 TBRG4-215ENST00000494076 2190 ntAPPRIS P1 TSL 2 BASIC17.66■□□□□ 0.42
SYNE3Q6ZMZ3 LINC00937-207ENST00000544461 3033 ntTSL 2 BASIC17.66■□□□□ 0.42
SYNE3Q6ZMZ3 DNAJC7-202ENST00000426588 1774 ntTSL 2 BASIC17.66■□□□□ 0.42
SYNE3Q6ZMZ3 AC018665.1-201ENST00000622927 1362 ntBASIC17.66■□□□□ 0.42
SYNE3Q6ZMZ3 HTR3A-202ENST00000355556 2331 ntTSL 2 BASIC17.65■□□□□ 0.42
SYNE3Q6ZMZ3 ZNF18-201ENST00000322748 2767 ntAPPRIS P3 TSL 2 BASIC17.65■□□□□ 0.42
SYNE3Q6ZMZ3 KNDC1-201ENST00000304613 6793 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
SYNE3Q6ZMZ3 KIF7-201ENST00000394412 4551 ntAPPRIS P1 TSL 5 BASIC17.65■□□□□ 0.42
SYNE3Q6ZMZ3 CCNE1-203ENST00000444983 1680 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
SYNE3Q6ZMZ3 SPPL2B-207ENST00000610743 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
SYNE3Q6ZMZ3 TMEM132E-203ENST00000631683 4379 ntAPPRIS P2 TSL 5 BASIC17.65■□□□□ 0.42
SYNE3Q6ZMZ3 AC097374.1-201ENST00000568768 6624 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
SYNE3Q6ZMZ3 PLEKHD1-201ENST00000322564 4865 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
SYNE3Q6ZMZ3 RPP40-202ENST00000380051 1483 ntAPPRIS P1 TSL 5 BASIC17.65■□□□□ 0.42
SYNE3Q6ZMZ3 CYB5R3-203ENST00000402438 1050 ntTSL 5 BASIC17.65■□□□□ 0.42
SYNE3Q6ZMZ3 ECSIT-203ENST00000417981 970 ntTSL 2 BASIC17.65■□□□□ 0.42
SYNE3Q6ZMZ3 TMEM14DP-201ENST00000422205 345 ntBASIC17.65■□□□□ 0.42
SYNE3Q6ZMZ3 RPUSD3-204ENST00000424438 1005 ntTSL 2 BASIC17.65■□□□□ 0.42
SYNE3Q6ZMZ3 AL157832.1-201ENST00000428273 495 ntTSL 2 BASIC17.65■□□□□ 0.42
SYNE3Q6ZMZ3 PNKD-204ENST00000436005 978 ntTSL 5 BASIC17.65■□□□□ 0.42
SYNE3Q6ZMZ3 AP000552.1-208ENST00000452952 576 ntTSL 4 BASIC17.65■□□□□ 0.42
SYNE3Q6ZMZ3 AL353747.3-201ENST00000454185 579 ntTSL 3 BASIC17.65■□□□□ 0.42
SYNE3Q6ZMZ3 FO681548.1-201ENST00000455617 1132 ntBASIC17.65■□□□□ 0.42
SYNE3Q6ZMZ3 CD4-210ENST00000541982 1187 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
SYNE3Q6ZMZ3 TROAP-207ENST00000548311 623 ntAPPRIS ALT2 TSL 2 BASIC17.65■□□□□ 0.42
SYNE3Q6ZMZ3 TMEM170A-203ENST00000566980 547 ntTSL 5 BASIC17.65■□□□□ 0.42
SYNE3Q6ZMZ3 RN7SL48P-201ENST00000579283 293 ntBASIC17.65■□□□□ 0.42
SYNE3Q6ZMZ3 AC073389.2-202ENST00000607450 441 ntTSL 5 BASIC17.65■□□□□ 0.42
SYNE3Q6ZMZ3 AC132938.4-201ENST00000623835 848 ntBASIC17.65■□□□□ 0.42
SYNE3Q6ZMZ3 MVB12B-206ENST00000489637 2666 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
SYNE3Q6ZMZ3 ZNF664-204ENST00000538932 4321 ntAPPRIS P1 TSL 3 BASIC17.65■□□□□ 0.42
SYNE3Q6ZMZ3 GLG1-203ENST00000447066 3626 ntAPPRIS ALT2 TSL 2 BASIC17.65■□□□□ 0.42
SYNE3Q6ZMZ3 FECH-201ENST00000262093 3853 ntAPPRIS P3 TSL 1 (best) BASIC17.65■□□□□ 0.42
SYNE3Q6ZMZ3 GRM7-215ENST00000486284 4241 ntAPPRIS ALT2 TSL 5 BASIC17.65■□□□□ 0.42
SYNE3Q6ZMZ3 ELF2-202ENST00000379549 3005 ntTSL 2 BASIC17.65■□□□□ 0.42
SYNE3Q6ZMZ3 AC018442.1-201ENST00000421439 2061 ntBASIC17.65■□□□□ 0.42
SYNE3Q6ZMZ3 AMPD3-203ENST00000396554 3806 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
SYNE3Q6ZMZ3 RNF135-202ENST00000328381 2892 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
SYNE3Q6ZMZ3 F8-201ENST00000330287 2620 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
SYNE3Q6ZMZ3 C20orf202-201ENST00000400633 1604 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
SYNE3Q6ZMZ3 CSF2RB-202ENST00000403662 4863 ntAPPRIS P2 TSL 5 BASIC17.65■□□□□ 0.42
SYNE3Q6ZMZ3 NHEG1-202ENST00000432330 1357 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
SYNE3Q6ZMZ3 SH3PXD2B-203ENST00000519643 1394 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
SYNE3Q6ZMZ3 AGAP4-208ENST00000618171 2387 ntTSL 5 BASIC17.65■□□□□ 0.42
SYNE3Q6ZMZ3 ADCY6-201ENST00000307885 6464 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
SYNE3Q6ZMZ3 AC025674.2-201ENST00000522622 2971 ntTSL 1 (best) BASIC17.64■□□□□ 0.42
SYNE3Q6ZMZ3 DUS4L-201ENST00000265720 2220 ntAPPRIS P1 TSL 2 BASIC17.64■□□□□ 0.42
SYNE3Q6ZMZ3 ARHGEF16-201ENST00000378371 2219 ntTSL 1 (best) BASIC17.64■□□□□ 0.42
SYNE3Q6ZMZ3 KDELC2-201ENST00000323468 4312 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.42
SYNE3Q6ZMZ3 IRF8-201ENST00000268638 3030 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
SYNE3Q6ZMZ3 PTPN9-206ENST00000618819 7813 ntAPPRIS P2 TSL 1 (best) BASIC17.64■□□□□ 0.41
SYNE3Q6ZMZ3 HEY1-202ENST00000354724 2293 ntAPPRIS P3 TSL 1 (best) BASIC17.64■□□□□ 0.41
SYNE3Q6ZMZ3 TNRC18-203ENST00000399537 10572 ntAPPRIS ALT2 TSL 5 BASIC17.64■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 34.7 ms