Protein–RNA interactions for Protein: Q8N3C7

CLIP4, CAP-Gly domain-containing linker protein 4, humanhuman

Predictions only

Length 705 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP4Q8N3C7 SLFNL1-204ENST00000372613 2654 ntTSL 2 BASIC14.15□□□□□ -0.14
CLIP4Q8N3C7 PIK3R5-216ENST00000584803 2653 ntAPPRIS ALT1 TSL 5 BASIC14.15□□□□□ -0.14
CLIP4Q8N3C7 C19orf57-201ENST00000346736 2489 ntAPPRIS P2 TSL 2 BASIC14.15□□□□□ -0.14
CLIP4Q8N3C7 RNPS1-216ENST00000565678 2298 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
CLIP4Q8N3C7 CISH-202ENST00000443053 2167 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
CLIP4Q8N3C7 VAC14-202ENST00000536184 2161 ntTSL 2 BASIC14.15□□□□□ -0.14
CLIP4Q8N3C7 KIAA0513-207ENST00000567328 1873 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
CLIP4Q8N3C7 TMEM150A-203ENST00000409668 1776 ntAPPRIS P1 TSL 2 BASIC14.15□□□□□ -0.14
CLIP4Q8N3C7 EHF-210ENST00000531794 1481 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
CLIP4Q8N3C7 CBX2-201ENST00000269399 1061 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
CLIP4Q8N3C7 AC008443.3-201ENST00000412295 549 ntTSL 4 BASIC14.15□□□□□ -0.14
CLIP4Q8N3C7 AC018685.2-201ENST00000414065 547 ntTSL 4 BASIC14.15□□□□□ -0.14
CLIP4Q8N3C7 AC016876.1-201ENST00000415124 352 ntTSL 3 BASIC14.15□□□□□ -0.14
CLIP4Q8N3C7 DIRC3-201ENST00000423123 552 ntAPPRIS P1 TSL 4 BASIC14.15□□□□□ -0.14
CLIP4Q8N3C7 AC007405.3-202ENST00000426475 660 ntTSL 3 BASIC14.15□□□□□ -0.14
CLIP4Q8N3C7 AC004890.2-204ENST00000481968 304 ntBASIC14.15□□□□□ -0.14
CLIP4Q8N3C7 RCHY1-210ENST00000513257 759 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
CLIP4Q8N3C7 MSC-AS1-206ENST00000519751 596 ntTSL 4 BASIC14.15□□□□□ -0.14
CLIP4Q8N3C7 PXN-AS1-204ENST00000542265 854 ntTSL 2 BASIC14.15□□□□□ -0.14
CLIP4Q8N3C7 AJ003147.2-201ENST00000576468 629 ntTSL 3 BASIC14.15□□□□□ -0.14
CLIP4Q8N3C7 CUEDC1-207ENST00000577840 875 ntTSL 5 BASIC14.15□□□□□ -0.14
CLIP4Q8N3C7 PRR29-204ENST00000577953 565 ntTSL 4 BASIC14.15□□□□□ -0.14
CLIP4Q8N3C7 SRD5A3P1-201ENST00000603021 949 ntBASIC14.15□□□□□ -0.14
CLIP4Q8N3C7 ACYP2-209ENST00000607452 831 ntTSL 2 BASIC14.15□□□□□ -0.14
CLIP4Q8N3C7 AL391069.4-201ENST00000609583 481 ntBASIC14.15□□□□□ -0.14
CLIP4Q8N3C7 GRIA3-205ENST00000611689 936 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
CLIP4Q8N3C7 AC093512.1-201ENST00000617969 520 ntBASIC14.15□□□□□ -0.14
CLIP4Q8N3C7 ITGB2-203ENST00000355153 2913 ntAPPRIS P1 TSL 2 BASIC14.15□□□□□ -0.14
CLIP4Q8N3C7 AFDN-205ENST00000392108 6812 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
CLIP4Q8N3C7 MLLT11-201ENST00000368921 4075 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
CLIP4Q8N3C7 RADIL-201ENST00000399583 3689 ntAPPRIS P1 TSL 5 BASIC14.15□□□□□ -0.14
CLIP4Q8N3C7 WDR33-201ENST00000322313 9471 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
CLIP4Q8N3C7 ARMCX2-201ENST00000328766 2762 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
CLIP4Q8N3C7 MYOZ1-201ENST00000359322 1541 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
CLIP4Q8N3C7 ATP6V0E1-203ENST00000519374 1433 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
CLIP4Q8N3C7 SIGLEC5-201ENST00000534261 2360 ntAPPRIS P1 TSL 5 BASIC14.15□□□□□ -0.14
CLIP4Q8N3C7 RTF1-201ENST00000389629 5021 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
CLIP4Q8N3C7 IGHA1-202ENST00000641837 1310 ntAPPRIS P5 BASIC14.15□□□□□ -0.15
CLIP4Q8N3C7 PRRT2-201ENST00000300797 3002 ntTSL 2 BASIC14.15□□□□□ -0.15
CLIP4Q8N3C7 TNFRSF1B-201ENST00000376259 3683 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
CLIP4Q8N3C7 TSC2-203ENST00000382538 5264 ntAPPRIS ALT2 TSL 2 BASIC14.14□□□□□ -0.15
CLIP4Q8N3C7 STK3-201ENST00000419617 2826 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
CLIP4Q8N3C7 PDLIM5-202ENST00000318007 1960 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
CLIP4Q8N3C7 SPRY2-201ENST00000377102 2708 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
CLIP4Q8N3C7 PXYLP1-201ENST00000286353 3281 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
CLIP4Q8N3C7 PRF1-202ENST00000441259 2533 ntAPPRIS P1 TSL 5 BASIC14.14□□□□□ -0.15
CLIP4Q8N3C7 RSPH6A-203ENST00000600188 1751 ntAPPRIS ALT2 TSL 2 BASIC14.14□□□□□ -0.15
CLIP4Q8N3C7 ANKRD35-201ENST00000355594 3342 ntAPPRIS P1 TSL 2 BASIC14.14□□□□□ -0.15
CLIP4Q8N3C7 RAB43-202ENST00000393304 4230 ntAPPRIS P1 TSL 4 BASIC14.14□□□□□ -0.15
CLIP4Q8N3C7 ZFPL1-201ENST00000294258 1371 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
CLIP4Q8N3C7 RERG-209ENST00000546331 1383 ntTSL 2 BASIC14.14□□□□□ -0.15
CLIP4Q8N3C7 ARHGAP45-206ENST00000586866 4120 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
CLIP4Q8N3C7 AC097359.2-201ENST00000604992 2389 ntBASIC14.14□□□□□ -0.15
CLIP4Q8N3C7 NEK11-205ENST00000507910 1841 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
CLIP4Q8N3C7 CORO7-222ENST00000574025 2826 ntTSL 2 BASIC14.14□□□□□ -0.15
CLIP4Q8N3C7 CLTA-203ENST00000396603 1090 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
CLIP4Q8N3C7 SYS1-203ENST00000414310 795 ntTSL 3 BASIC14.14□□□□□ -0.15
CLIP4Q8N3C7 MIPEPP3-202ENST00000424756 347 ntTSL 3 BASIC14.14□□□□□ -0.15
CLIP4Q8N3C7 ARHGAP11B-201ENST00000428041 1017 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
CLIP4Q8N3C7 PTPRG-AS1-205ENST00000475371 733 ntTSL 3 BASIC14.14□□□□□ -0.15
CLIP4Q8N3C7 TSC22D3-213ENST00000506081 956 ntTSL 5 BASIC14.14□□□□□ -0.15
CLIP4Q8N3C7 AC114956.2-201ENST00000512498 572 ntTSL 4 BASIC14.14□□□□□ -0.15
CLIP4Q8N3C7 STOM-203ENST00000538954 1257 ntTSL 5 BASIC14.14□□□□□ -0.15
CLIP4Q8N3C7 AC135586.1-201ENST00000539323 574 ntBASIC14.14□□□□□ -0.15
CLIP4Q8N3C7 AL583722.3-202ENST00000554954 486 ntTSL 4 BASIC14.14□□□□□ -0.15
CLIP4Q8N3C7 SDR39U1-212ENST00000555365 976 ntTSL 3 BASIC14.14□□□□□ -0.15
CLIP4Q8N3C7 SAMD11P1-201ENST00000571429 661 ntBASIC14.14□□□□□ -0.15
CLIP4Q8N3C7 SHBG-212ENST00000575314 1146 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
CLIP4Q8N3C7 SMCO4-206ENST00000596676 180 ntAPPRIS P1 BASIC14.14□□□□□ -0.15
CLIP4Q8N3C7 AL390955.2-201ENST00000603032 514 ntBASIC14.14□□□□□ -0.15
CLIP4Q8N3C7 ANKRD44-203ENST00000409153 2724 ntTSL 2 BASIC14.14□□□□□ -0.15
CLIP4Q8N3C7 GNAI2-201ENST00000266027 2169 ntTSL 2 BASIC14.14□□□□□ -0.15
CLIP4Q8N3C7 AFDN-203ENST00000366806 5962 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
CLIP4Q8N3C7 AC018529.2-202ENST00000611482 3087 ntBASIC14.14□□□□□ -0.15
CLIP4Q8N3C7 ETNPPL-201ENST00000296486 2099 ntAPPRIS P3 TSL 1 (best) BASIC14.14□□□□□ -0.15
CLIP4Q8N3C7 NFATC2-203ENST00000414705 2974 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
CLIP4Q8N3C7 GCFC2-211ENST00000541687 4318 ntTSL 2 BASIC14.14□□□□□ -0.15
CLIP4Q8N3C7 ARAP1-203ENST00000393605 4778 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
CLIP4Q8N3C7 RPS6KC1-207ENST00000543470 4227 ntTSL 2 BASIC14.14□□□□□ -0.15
CLIP4Q8N3C7 TEX28-203ENST00000617225 1525 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
CLIP4Q8N3C7 MLXIPL-203ENST00000354613 3215 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
CLIP4Q8N3C7 AFAP1L1-205ENST00000515000 2319 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
CLIP4Q8N3C7 FAN1-207ENST00000565466 2304 ntTSL 2 BASIC14.14□□□□□ -0.15
CLIP4Q8N3C7 NLRP13-201ENST00000342929 3132 ntAPPRIS P3 TSL 1 (best) BASIC14.14□□□□□ -0.15
CLIP4Q8N3C7 CSNK1A1P1-201ENST00000430593 2147 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
CLIP4Q8N3C7 NDRG2-226ENST00000554104 2146 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
CLIP4Q8N3C7 PTGES3L-AARSD1-202ENST00000409103 1670 ntTSL 5 BASIC14.14□□□□□ -0.15
CLIP4Q8N3C7 SNPH-203ENST00000614659 5354 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
CLIP4Q8N3C7 UGT3A2-201ENST00000282507 2355 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
CLIP4Q8N3C7 PANX2-202ENST00000395842 3051 ntAPPRIS P1 TSL 2 BASIC14.13□□□□□ -0.15
CLIP4Q8N3C7 TMUB2-202ENST00000357984 1921 ntAPPRIS P3 TSL 1 (best) BASIC14.13□□□□□ -0.15
CLIP4Q8N3C7 GLB1L3-201ENST00000389887 3566 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
CLIP4Q8N3C7 PCDHA5-201ENST00000529619 4157 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
CLIP4Q8N3C7 TTLL4-212ENST00000457313 3723 ntTSL 2 BASIC14.13□□□□□ -0.15
CLIP4Q8N3C7 AGAP1-201ENST00000304032 10832 ntAPPRIS ALT2 TSL 5 BASIC14.13□□□□□ -0.15
CLIP4Q8N3C7 SEZ6-203ENST00000360295 4306 ntAPPRIS ALT2 TSL 5 BASIC14.13□□□□□ -0.15
CLIP4Q8N3C7 DNAJC22-201ENST00000395069 2059 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
CLIP4Q8N3C7 PRMT3-202ENST00000331079 2653 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
CLIP4Q8N3C7 FGF7P3-202ENST00000640245 1707 ntTSL 4 BASIC14.13□□□□□ -0.15
CLIP4Q8N3C7 ESPN-201ENST00000377828 3531 ntAPPRIS P2 TSL 1 (best) BASIC14.13□□□□□ -0.15
Retrieved 100 of 98,524 protein–RNA pairs in 54 ms