Protein–RNA interactions for Protein: O75533

SF3B1, Splicing factor 3B subunit 1, humanhuman

Known RBP eCLIP

Length 1,304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1O75533 G3BP2-219ENST00000515457 560 ntTSL 416.3■□□□□ 0.24e-7■■■■■ 86.2
SF3B1O75533 G3BP2-205ENST00000502654 546 ntTSL 416.3■□□□□ 0.24e-7■■■■■ 86.2
SF3B1O75533 BRAP-201ENST00000327551 1947 ntTSL 1 (best) BASIC16.29■□□□□ 0.24e-7■■■■■ 86.2
SF3B1O75533 DNAAF5-201ENST00000297440 3410 ntAPPRIS P2 TSL 1 (best) BASIC16.22■□□□□ 0.198e-6■■■■■ 86.2
SF3B1O75533 ATG16L1-216ENST00000485623 568 ntTSL 216.18■□□□□ 0.184e-7■■■■■ 86.2
SF3B1O75533 NDUFB5-202ENST00000359944 1054 ntTSL 1 (best)16.13■□□□□ 0.177e-7■■■■■ 86.2
SF3B1O75533 VANGL2-201ENST00000368061 5340 ntAPPRIS P1 TSL 2 BASIC16.12■□□□□ 0.174e-7■■■■■ 86.2
SF3B1O75533 NCK1-202ENST00000460960 577 ntTSL 216.09■□□□□ 0.174e-7■■■■■ 86.2
SF3B1O75533 DNAJC10-210ENST00000616986 5783 ntTSL 1 (best) BASIC16.07■□□□□ 0.164e-7■■■■■ 86.2
SF3B1O75533 MYRF-208ENST00000546247 645 ntTSL 316.02■□□□□ 0.164e-7■■■■■ 86.2
SF3B1O75533 NUP93-203ENST00000562496 583 ntTSL 416■□□□□ 0.154e-7■■■■■ 86.2
SF3B1O75533 STARD3-220ENST00000581894 591 ntTSL 316■□□□□ 0.154e-7■■■■■ 86.2
SF3B1O75533 PHGDH-205ENST00000482968 1754 ntTSL 215.99■□□□□ 0.153e-8■■■■■ 86.2
SF3B1O75533 PRPF40A-201ENST00000354363 1622 ntTSL 215.96■□□□□ 0.154e-7■■■■■ 86.2
SF3B1O75533 GTPBP3-216ENST00000598038 2917 ntTSL 515.96■□□□□ 0.143e-13■■■■■ 86.2
SF3B1O75533 RFWD3-204ENST00000572337 586 ntTSL 415.94■□□□□ 0.144e-7■■■■■ 86.2
SF3B1O75533 SIRT6-208ENST00000597896 827 ntTSL 315.94■□□□□ 0.144e-7■■■■■ 86.2
SF3B1O75533 SLC38A5-213ENST00000620913 1993 ntAPPRIS P1 TSL 5 BASIC15.93■□□□□ 0.144e-7■■■■■ 86.2
SF3B1O75533 SSFA2-205ENST00000431877 5150 ntAPPRIS ALT2 TSL 1 (best) BASIC15.93■□□□□ 0.144e-7■■■■■ 86.2
SF3B1O75533 PRPF40A-211ENST00000493468 1043 ntTSL 1 (best)15.89■□□□□ 0.134e-7■■■■■ 86.2
SF3B1O75533 RASA3-202ENST00000542651 975 ntTSL 515.87■□□□□ 0.134e-7■■■■■ 86.2
SF3B1O75533 RASGEF1A-205ENST00000472864 753 ntTSL 315.86■□□□□ 0.134e-7■■■■■ 86.2
SF3B1O75533 RASGEF1A-204ENST00000395810 3235 ntAPPRIS P3 TSL 1 (best) BASIC15.85■□□□□ 0.134e-7■■■■■ 86.2
SF3B1O75533 NDUFB5-203ENST00000468210 824 ntTSL 215.84■□□□□ 0.137e-7■■■■■ 86.2
SF3B1O75533 TBRG1-210ENST00000531667 552 ntTSL 415.84■□□□□ 0.134e-7■■■■■ 86.2
SF3B1O75533 PCK2-203ENST00000545054 2505 ntTSL 2 BASIC15.82■□□□□ 0.124e-7■■■■■ 86.2
SF3B1O75533 RPL4-216ENST00000569438 565 ntTSL 515.82■□□□□ 0.124e-7■■■■■ 86.2
SF3B1O75533 GIT1-213ENST00000583413 546 ntTSL 415.81■□□□□ 0.124e-7■■■■■ 86.2
SF3B1O75533 SSFA2-202ENST00000409001 4987 ntAPPRIS ALT2 TSL 1 (best) BASIC15.78■□□□□ 0.124e-7■■■■■ 86.2
SF3B1O75533 MYADM-202ENST00000391768 1492 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.114e-7■■■■■ 86.2
SF3B1O75533 NDUFB5-216ENST00000611971 951 ntTSL 2 BASIC15.76■□□□□ 0.117e-7■■■■■ 86.2
SF3B1O75533 ANKS3-213ENST00000589065 561 ntTSL 515.75■□□□□ 0.114e-7■■■■■ 86.2
SF3B1O75533 FOXRED2-204ENST00000397224 4967 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.114e-7■■■■■ 86.2
SF3B1O75533 ARF1-204ENST00000470670 712 ntTSL 315.72■□□□□ 0.114e-7■■■■■ 86.2
SF3B1O75533 ITGA9-AS1-213ENST00000614028 913 ntTSL 5 BASIC15.64■□□□□ 0.094e-7■■■■■ 86.2
SF3B1O75533 USP11-212ENST00000497179 900 ntTSL 515.6■□□□□ 0.094e-7■■■■■ 86.2
SF3B1O75533 CCNL1-202ENST00000295926 2388 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.093e-8■■■■■ 86.2
SF3B1O75533 CCNL1-217ENST00000476367 1603 ntTSL 1 (best)15.56■□□□□ 0.083e-8■■■■■ 86.2
SF3B1O75533 RPLP0-206ENST00000546990 770 ntTSL 315.56■□□□□ 0.084e-7■■■■■ 86.2
SF3B1O75533 ZBTB38-213ENST00000512276 821 ntTSL 415.53■□□□□ 0.084e-6■■■■■ 86.2
SF3B1O75533 SNX1-214ENST00000625244 324 ntTSL 5 BASIC15.52■□□□□ 0.084e-7■■■■■ 86.2
SF3B1O75533 TALDO1-203ENST00000528097 1231 ntTSL 1 (best) BASIC15.51■□□□□ 0.072e-7■■■■■ 86.2
SF3B1O75533 MYADM-206ENST00000414489 592 ntTSL 515.51■□□□□ 0.074e-7■■■■■ 86.2
SF3B1O75533 SLC38A5-209ENST00000497336 493 ntTSL 515.51■□□□□ 0.074e-7■■■■■ 86.2
SF3B1O75533 DVL2-205ENST00000574143 992 ntTSL 315.44■□□□□ 0.063e-8■■■■■ 86.2
SF3B1O75533 CIPC-203ENST00000554658 584 ntTSL 415.43■□□□□ 0.064e-7■■■■■ 86.2
SF3B1O75533 TOP3B-206ENST00000436282 2890 ntTSL 215.43■□□□□ 0.067e-6■■■■■ 86.2
SF3B1O75533 NACC1-201ENST00000292431 4445 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.063e-13■■■■■ 86.2
SF3B1O75533 FAM114A2-215ENST00000522858 3379 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.057e-6■■■■■ 86.2
SF3B1O75533 SEC13-211ENST00000431352 832 ntTSL 515.38■□□□□ 0.054e-7■■■■■ 86.2
SF3B1O75533 SLC38A5-214ENST00000622196 2100 ntTSL 5 BASIC15.38■□□□□ 0.054e-7■■■■■ 86.2
SF3B1O75533 SLC38A5-212ENST00000619100 2100 ntTSL 2 BASIC15.38■□□□□ 0.054e-7■■■■■ 86.2
SF3B1O75533 CIPC-207ENST00000556863 538 ntTSL 315.37■□□□□ 0.054e-7■■■■■ 86.2
SF3B1O75533 PHYKPL-206ENST00000476487 2251 ntTSL 215.36■□□□□ 0.055e-6■■■■■ 86.2
SF3B1O75533 AC215219.1-201ENST00000400706 1817 ntBASIC15.35■□□□□ 0.054e-7■■■■■ 86.2
SF3B1O75533 ATL3-203ENST00000538786 1920 ntAPPRIS ALT2 TSL 2 BASIC15.34■□□□□ 0.054e-7■■■■■ 86.2
SF3B1O75533 GSR-203ENST00000523295 913 ntTSL 315.33■□□□□ 0.044e-7■■■■■ 86.2
SF3B1O75533 SEC13-204ENST00000397099 555 ntTSL 415.3■□□□□ 0.044e-7■■■■■ 86.2
SF3B1O75533 ARPC1A-202ENST00000432786 1516 ntTSL 515.29■□□□□ 0.044e-7■■■■■ 86.2
SF3B1O75533 MYADM-205ENST00000391771 3111 ntAPPRIS P1 TSL 2 BASIC15.21■□□□□ 0.034e-7■■■■■ 86.2
SF3B1O75533 INO80-201ENST00000361937 6439 ntAPPRIS P1 TSL 5 BASIC15.2■□□□□ 0.024e-7■■■■■ 86.2
SF3B1O75533 MYADM-208ENST00000439000 841 ntTSL 315.19■□□□□ 0.024e-7■■■■■ 86.2
SF3B1O75533 MYADM-209ENST00000448420 777 ntTSL 215.17■□□□□ 0.024e-7■■■■■ 86.2
SF3B1O75533 ARPC1A-201ENST00000262942 1565 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.024e-7■■■■■ 86.2
SF3B1O75533 AC007388.1-205ENST00000445520 499 ntTSL 215.15■□□□□ 0.024e-7■■■■■ 86.2
SF3B1O75533 RGS5-216ENST00000449680 788 ntTSL 3 BASIC15.15■□□□□ 0.024e-7■■■■■ 86.2
SF3B1O75533 MINPP1-202ENST00000371996 2415 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.014e-7■■■■■ 86.2
SF3B1O75533 CUL7-203ENST00000535468 5504 ntAPPRIS ALT2 TSL 2 BASIC15.12■□□□□ 0.013e-6■■■■■ 86.2
SF3B1O75533 KCNJ11-204ENST00000528731 2146 ntTSL 1 (best) BASIC15.11■□□□□ 0.014e-7■■■■■ 86.2
SF3B1O75533 KIAA0391-204ENST00000557404 789 ntTSL 315.09■□□□□ 0.014e-7■■■■■ 86.2
SF3B1O75533 AC007388.1-204ENST00000449569 2517 ntTSL 2 BASIC15.09■□□□□ 0.014e-7■■■■■ 86.2
SF3B1O75533 RPL4-212ENST00000566622 817 ntTSL 215.05■□□□□ -04e-7■■■■■ 86.2
SF3B1O75533 PLCG1-209ENST00000483175 1084 ntTSL 215.03■□□□□ -04e-7■■■■■ 86.2
SF3B1O75533 ARHGDIA-215ENST00000583868 815 ntTSL 315.02■□□□□ -04e-7■■■■■ 86.2
SF3B1O75533 SEC13-205ENST00000397101 592 ntTSL 215□□□□□ -0.014e-7■■■■■ 86.2
SF3B1O75533 AMFR-203ENST00000563285 486 ntTSL 214.98□□□□□ -0.014e-7■■■■■ 86.2
SF3B1O75533 SMG9-211ENST00000601170 2387 ntTSL 2 BASIC14.84□□□□□ -0.033e-13■■■■■ 86.2
SF3B1O75533 MYADM-203ENST00000391769 3186 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.034e-7■■■■■ 86.2
SF3B1O75533 FOXRED2-201ENST00000216187 3933 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.044e-7■■■■■ 86.2
SF3B1O75533 ZMIZ2-211ENST00000480964 890 ntTSL 214.81□□□□□ -0.044e-7■■■■■ 86.2
SF3B1O75533 PEX5-207ENST00000455147 2689 ntAPPRIS P1 TSL 2 BASIC14.81□□□□□ -0.044e-7■■■■■ 86.2
SF3B1O75533 ZMIZ1-AS1-202ENST00000440151 814 ntTSL 3 BASIC14.79□□□□□ -0.044e-7■■■■■ 86.2
SF3B1O75533 H6PD-203ENST00000602477 5590 ntTSL 1 (best) BASIC14.78□□□□□ -0.044e-7■■■■■ 86.2
SF3B1O75533 SUMF1-204ENST00000448413 3150 ntTSL 214.78□□□□□ -0.044e-7■■■■■ 86.2
SF3B1O75533 RASGEF1A-202ENST00000374459 3264 ntAPPRIS ALT2 TSL 2 BASIC14.77□□□□□ -0.054e-7■■■■■ 86.2
SF3B1O75533 DIS3L2-205ENST00000409401 2048 ntTSL 1 (best) BASIC14.77□□□□□ -0.054e-7■■■■■ 86.2
SF3B1O75533 CCNL1-219ENST00000477127 1464 ntTSL 514.76□□□□□ -0.053e-8■■■■■ 86.2
SF3B1O75533 TBRG1-204ENST00000452080 730 ntTSL 314.74□□□□□ -0.054e-7■■■■■ 86.2
SF3B1O75533 TOP3B-214ENST00000457270 2956 ntTSL 514.7□□□□□ -0.067e-6■■■■■ 86.2
SF3B1O75533 PCK2-208ENST00000559250 1804 ntTSL 5 BASIC14.7□□□□□ -0.064e-7■■■■■ 86.2
SF3B1O75533 PI4KA-207ENST00000466772 3109 ntTSL 214.69□□□□□ -0.064e-7■■■■■ 86.2
SF3B1O75533 ACTR1B-202ENST00000451664 1151 ntTSL 514.68□□□□□ -0.064e-7■■■■■ 86.2
SF3B1O75533 PI4KA-206ENST00000466394 782 ntTSL 514.68□□□□□ -0.064e-7■■■■■ 86.2
SF3B1O75533 GIT1-211ENST00000581348 2827 ntAPPRIS ALT2 TSL 2 BASIC14.65□□□□□ -0.064e-7■■■■■ 86.2
SF3B1O75533 RILPL1-201ENST00000340724 2389 ntTSL 514.63□□□□□ -0.074e-7■■■■■ 86.2
SF3B1O75533 ARF1-211ENST00000490705 881 ntTSL 314.63□□□□□ -0.074e-7■■■■■ 86.2
SF3B1O75533 SLC38A5-210ENST00000595796 2659 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.094e-7■■■■■ 86.2
SF3B1O75533 AP2A2-213ENST00000528815 3072 ntTSL 214.49□□□□□ -0.091e-6■■■■■ 86.2
SF3B1O75533 ARF1-205ENST00000473546 291 ntTSL 214.48□□□□□ -0.094e-7■■■■■ 86.2
SF3B1O75533 PCK2-216ENST00000561286 2012 ntTSL 2 BASIC14.44□□□□□ -0.14e-7■■■■■ 86.2
Retrieved 100 of 46,956 protein–RNA pairs in 1541.7 ms