RNA–Protein interactions for RNA: ENST00000482968.1

PHGDH-205, Transcript of phosphoglycerate dehydrogenase, humanhuman

TSL 2

Gene PHGDH, Length 1,754 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHGDH-205ENST00000482968 NISCHQ9Y2I1 1504 aa34.95■■■■□ 3.18
PHGDH-205ENST00000482968 CCDC180Q9P1Z9 1646 aa30.65■■■□□ 2.5
PHGDH-205ENST00000482968 ABCC9O60706 1549 aa29.46■■■□□ 2.31
PHGDH-205ENST00000482968 ZCCHC6Q5VYS8 1495 aaKnown RBP29.23■■■□□ 2.27
PHGDH-205ENST00000482968 DCAF8L2P0C7V8 631 aa29.14■■■□□ 2.26
PHGDH-205ENST00000482968 DCAF1Q9Y4B6 1507 aa28.86■■■□□ 2.21
PHGDH-205ENST00000482968 MYO15BQ96JP2 1530 aa28.69■■■□□ 2.18
PHGDH-205ENST00000482968 NACADO15069 1562 aa28.68■■■□□ 2.18
PHGDH-205ENST00000482968 RB1CC1Q8TDY2 1594 aa28.55■■■□□ 2.16
PHGDH-205ENST00000482968 SHROOM4Q9ULL8 1493 aa28.25■■■□□ 2.11
PHGDH-205ENST00000482968 SCRIBQ14160 1630 aa28.16■■■□□ 2.1
PHGDH-205ENST00000482968 UNC13AQ9UPW8 1703 aa27.96■■■□□ 2.07
PHGDH-205ENST00000482968 PABPN1Q86U42 306 aaKnown RBP eCLIP27.73■■■□□ 2.03
PHGDH-205ENST00000482968 BICRAQ9NZM4 1560 aa27.68■■■□□ 2.02
PHGDH-205ENST00000482968 CECR2Q9BXF3 1484 aa27.21■■□□□ 1.95
PHGDH-205ENST00000482968 BAZ1AQ9NRL2 1556 aaPredicted RBP27.01■■□□□ 1.91
PHGDH-205ENST00000482968 SUPT5HO00267 1087 aaKnown RBP26.99■■□□□ 1.91
PHGDH-205ENST00000482968 MROH2BQ7Z745 1585 aa26.99■■□□□ 1.91
PHGDH-205ENST00000482968 SMARCA4P51532 1647 aa26.95■■□□□ 1.9
PHGDH-205ENST00000482968 RSF1Q96T23 1441 aaPredicted RBP26.94■■□□□ 1.9
PHGDH-205ENST00000482968 EIF4G1Q04637 1599 aaKnown RBP26.9■■□□□ 1.9
PHGDH-205ENST00000482968 WIZO95785 1651 aa26.75■■□□□ 1.87
PHGDH-205ENST00000482968 ATAD2BQ9ULI0 1458 aa26.64■■□□□ 1.85
PHGDH-205ENST00000482968 CC2D2AQ9P2K1 1620 aa26.63■■□□□ 1.85
PHGDH-205ENST00000482968 PEG3Q9GZU2 1588 aa26.61■■□□□ 1.85
PHGDH-205ENST00000482968 SMARCA2P51531 1590 aa26.6■■□□□ 1.85
PHGDH-205ENST00000482968 NCAPD3P42695 1498 aa26.48■■□□□ 1.83
PHGDH-205ENST00000482968 BAZ1BQ9UIG0 1483 aaKnown RBP26.46■■□□□ 1.83
PHGDH-205ENST00000482968 DNAJC5BQ9UF47 199 aa26.44■■□□□ 1.82
PHGDH-205ENST00000482968 TOP2AP11388 1531 aaKnown RBP26.43■■□□□ 1.82
PHGDH-205ENST00000482968 HMGXB3Q12766 1538 aa26.38■■□□□ 1.81
PHGDH-205ENST00000482968 CCDC88BA6NC98 1476 aa26.19■■□□□ 1.78
PHGDH-205ENST00000482968 CADPSQ9ULU8 1353 aa25.8■■□□□ 1.72
PHGDH-205ENST00000482968 CFTRP13569 1480 aa25.77■■□□□ 1.72
PHGDH-205ENST00000482968 NESP48681 1621 aa25.72■■□□□ 1.71
PHGDH-205ENST00000482968 LAMC3Q9Y6N6 1575 aa25.65■■□□□ 1.7
PHGDH-205ENST00000482968 PRDM2Q13029 1718 aa25.59■■□□□ 1.69
PHGDH-205ENST00000482968 CHIC1Q5VXU3 224 aa25.56■■□□□ 1.68
PHGDH-205ENST00000482968 PDS5BQ9NTI5 1447 aa25.5■■□□□ 1.67
PHGDH-205ENST00000482968 FANCD2Q9BXW9 1451 aa25.49■■□□□ 1.67
PHGDH-205ENST00000482968 ABCC8Q09428 1581 aa25.49■■□□□ 1.67
PHGDH-205ENST00000482968 TRIM41Q8WV44 630 aa25.4■■□□□ 1.66
PHGDH-205ENST00000482968 KIF21AQ7Z4S6 1674 aa25.38■■□□□ 1.65
PHGDH-205ENST00000482968 WRNQ14191 1432 aaPredicted RBP eCLIP25.38■■□□□ 1.65
PHGDH-205ENST00000482968 CEP164Q9UPV0 1460 aa25.38■■□□□ 1.65
PHGDH-205ENST00000482968 ERCC6Q03468 1493 aa25.31■■□□□ 1.64
PHGDH-205ENST00000482968 SYNJ1O43426 1573 aa25.27■■□□□ 1.64
PHGDH-205ENST00000482968 CUX1P39880 1505 aa25.25■■□□□ 1.63
PHGDH-205ENST00000482968 TOP2BQ02880 1626 aa25.2■■□□□ 1.63
PHGDH-205ENST00000482968 URB2Q14146 1524 aaKnown RBP25.19■■□□□ 1.62
PHGDH-205ENST00000482968 BIVM-ERCC5R4GMW8 1640 aa25.18■■□□□ 1.62
PHGDH-205ENST00000482968 MRC2Q9UBG0 1479 aa25.17■■□□□ 1.62
PHGDH-205ENST00000482968 TOPBP1Q92547 1522 aa25.16■■□□□ 1.62
PHGDH-205ENST00000482968 DNMBPQ6XZF7 1577 aa25.16■■□□□ 1.62
PHGDH-205ENST00000482968 FGD5Q6ZNL6 1462 aa25.06■■□□□ 1.6
PHGDH-205ENST00000482968 THOC2Q8NI27 1593 aaKnown RBP25.06■■□□□ 1.6
PHGDH-205ENST00000482968 WDR62O43379 1518 aa25.04■■□□□ 1.6
PHGDH-205ENST00000482968 POLA1P09884 1462 aaPredicted RBP25■■□□□ 1.59
PHGDH-205ENST00000482968 SOGA1O94964 1423 aa24.96■■□□□ 1.59
PHGDH-205ENST00000482968 RAD54L2Q9Y4B4 1467 aa24.94■■□□□ 1.58
PHGDH-205ENST00000482968 FAM9AQ8IZU1 332 aaPredicted RBP24.94■■□□□ 1.58
PHGDH-205ENST00000482968 CUX2O14529 1486 aa24.87■■□□□ 1.57
PHGDH-205ENST00000482968 RUSC2Q8N2Y8 1516 aa24.87■■□□□ 1.57
PHGDH-205ENST00000482968 ABCA10Q8WWZ4 1543 aa24.81■■□□□ 1.56
PHGDH-205ENST00000482968 TARBP1Q13395 1621 aaKnown RBP24.81■■□□□ 1.56
PHGDH-205ENST00000482968 IFT140Q96RY7 1462 aa24.79■■□□□ 1.56
PHGDH-205ENST00000482968 KIF27Q86VH2 1401 aa24.78■■□□□ 1.56
PHGDH-205ENST00000482968 TDRD9Q8NDG6 1382 aaKnown RBP24.76■■□□□ 1.55
PHGDH-205ENST00000482968 EEA1Q15075 1411 aa24.75■■□□□ 1.55
PHGDH-205ENST00000482968 WDR97A6NE52 1622 aa24.75■■□□□ 1.55
PHGDH-205ENST00000482968 CSRNP3Q8WYN3 585 aa24.73■■□□□ 1.55
PHGDH-205ENST00000482968 ZNF608Q9ULD9 1512 aaPredicted RBP24.69■■□□□ 1.54
PHGDH-205ENST00000482968 AQRO60306 1485 aaKnown RBP eCLIP24.68■■□□□ 1.541e-6■■■■□ 20.3
PHGDH-205ENST00000482968 GAPVD1Q14C86 1478 aa24.66■■□□□ 1.54
PHGDH-205ENST00000482968 ABCA5Q8WWZ7 1642 aa24.63■■□□□ 1.53
PHGDH-205ENST00000482968 IGF1RP08069 1367 aa24.63■■□□□ 1.53
PHGDH-205ENST00000482968 EHMT2Q96KQ7 1210 aa24.63■■□□□ 1.53
PHGDH-205ENST00000482968 LOC105371045A0A1W2PR82 267 aa24.61■■□□□ 1.53
PHGDH-205ENST00000482968 EIF4G3O43432 1585 aaKnown RBP24.57■■□□□ 1.52
PHGDH-205ENST00000482968 GRIN2BQ13224 1484 aa24.52■■□□□ 1.52
PHGDH-205ENST00000482968 PBRM1Q86U86 1689 aa24.52■■□□□ 1.52
PHGDH-205ENST00000482968 ERICH3Q5RHP9 1530 aa24.51■■□□□ 1.51
PHGDH-205ENST00000482968 CARMIL1Q5VZK9 1371 aa24.5■■□□□ 1.51
PHGDH-205ENST00000482968 PRXQ9BXM0 1461 aa24.48■■□□□ 1.51
PHGDH-205ENST00000482968 KIF21BO75037 1637 aa24.44■■□□□ 1.5
PHGDH-205ENST00000482968 CUL7Q14999 1698 aa24.43■■□□□ 1.5
PHGDH-205ENST00000482968 RAPGEF2Q9Y4G8 1499 aa24.43■■□□□ 1.5
PHGDH-205ENST00000482968 UBTFP17480 764 aaKnown RBP24.41■■□□□ 1.5
PHGDH-205ENST00000482968 SNAPC4Q5SXM2 1469 aa24.41■■□□□ 1.5
PHGDH-205ENST00000482968 GOLGA3Q08378 1498 aa24.4■■□□□ 1.5
PHGDH-205ENST00000482968 FHAD1B1AJZ9 1412 aa24.37■■□□□ 1.49
PHGDH-205ENST00000482968 MAGI1Q96QZ7 1491 aaPredicted RBP24.35■■□□□ 1.49
PHGDH-205ENST00000482968 ADAMTS12P58397 1594 aa24.34■■□□□ 1.49
PHGDH-205ENST00000482968 FBLN2P98095 1184 aa24.32■■□□□ 1.48
PHGDH-205ENST00000482968 CHMP7Q8WUX9 453 aaPredicted RBP24.31■■□□□ 1.48
PHGDH-205ENST00000482968 SYNJ2O15056 1496 aa24.27■■□□□ 1.48
PHGDH-205ENST00000482968 TNIKQ9UKE5 1360 aa24.25■■□□□ 1.47
PHGDH-205ENST00000482968 GRIN2AQ12879 1464 aa24.21■■□□□ 1.47
PHGDH-205ENST00000482968 RANGAP1P46060 587 aaPredicted RBP24.17■■□□□ 1.46
PHGDH-205ENST00000482968 CHD1O14646 1710 aa24.14■■□□□ 1.46
Retrieved 100 of 20,778 RNA–protein pairs in 7.5 ms