Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 AJ239322.1-201ENST00000419362 2209 ntTSL 2 BASIC12.38□□□□□ -0.43
CDX1P47902 AL512306.2-201ENST00000444037 2219 ntTSL 2 BASIC12.38□□□□□ -0.43
CDX1P47902 SNX19-201ENST00000265909 6535 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
CDX1P47902 CELP-203ENST00000624767 2414 ntTSL 5 BASIC12.38□□□□□ -0.43
CDX1P47902 ERICH5-201ENST00000318528 1761 ntAPPRIS P3 TSL 1 (best) BASIC12.38□□□□□ -0.43
CDX1P47902 C9orf78-201ENST00000372447 1795 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
CDX1P47902 FIBCD1-202ENST00000372338 3253 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
CDX1P47902 PABPC1-201ENST00000318607 3485 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
CDX1P47902 SELENON-202ENST00000361547 4334 ntAPPRIS P4 TSL 1 (best) BASIC12.38□□□□□ -0.43
CDX1P47902 APC2-201ENST00000233607 10151 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
CDX1P47902 ZC3H4-201ENST00000253048 6119 ntAPPRIS P2 TSL 1 (best) BASIC12.38□□□□□ -0.43
CDX1P47902 LINC00174-204ENST00000421767 4702 ntTSL 5 BASIC12.37□□□□□ -0.43
CDX1P47902 ETV2-205ENST00000479824 1342 ntAPPRIS ALT2 TSL 1 (best) BASIC12.37□□□□□ -0.43
CDX1P47902 MAD1L1-203ENST00000402746 2355 ntTSL 2 BASIC12.37□□□□□ -0.43
CDX1P47902 TMEM220-202ENST00000455996 1402 ntAPPRIS ALT2 TSL 1 (best) BASIC12.37□□□□□ -0.43
CDX1P47902 COL1A2-201ENST00000297268 5411 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
CDX1P47902 FKBP6-202ENST00000413573 1507 ntTSL 5 BASIC12.37□□□□□ -0.43
CDX1P47902 LOX-206ENST00000639739 1626 ntTSL 5 BASIC12.37□□□□□ -0.43
CDX1P47902 TET3-201ENST00000305799 5174 ntTSL 5 BASIC12.37□□□□□ -0.43
CDX1P47902 SPDYE2B-203ENST00000507450 1742 ntAPPRIS P2 TSL 2 BASIC12.37□□□□□ -0.43
CDX1P47902 SPDYE2-203ENST00000507918 1742 ntAPPRIS P2 TSL 2 BASIC12.37□□□□□ -0.43
CDX1P47902 OXCT1-AS1-201ENST00000508458 1731 ntTSL 3 BASIC12.37□□□□□ -0.43
CDX1P47902 PAPOLA-201ENST00000216277 4519 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
CDX1P47902 GP6-202ENST00000333884 2210 ntAPPRIS ALT2 TSL 1 (best) BASIC12.37□□□□□ -0.43
CDX1P47902 AL031280.1-201ENST00000436991 2224 ntTSL 2 BASIC12.37□□□□□ -0.43
CDX1P47902 PNPLA5-205ENST00000597664 2537 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
CDX1P47902 MARK1-201ENST00000366917 2946 ntAPPRIS P3 TSL 1 (best) BASIC12.37□□□□□ -0.43
CDX1P47902 TGFBR3-204ENST00000465892 2908 ntAPPRIS ALT1 TSL 1 (best) BASIC12.37□□□□□ -0.43
CDX1P47902 ARID4B-201ENST00000264183 4995 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
CDX1P47902 SNX14-203ENST00000369627 3111 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
CDX1P47902 MRPL55-202ENST00000336300 722 ntAPPRIS P1 TSL 2 BASIC12.37□□□□□ -0.43
CDX1P47902 SYCE1-202ENST00000343131 1113 ntAPPRIS ALT2 TSL 1 (best) BASIC12.37□□□□□ -0.43
CDX1P47902 MRPL55-206ENST00000366732 722 ntTSL 3 BASIC12.37□□□□□ -0.43
CDX1P47902 CUTA-202ENST00000374496 762 ntAPPRIS P3 TSL 5 BASIC12.37□□□□□ -0.43
CDX1P47902 LRP5L-201ENST00000402785 1193 ntAPPRIS P2 TSL 1 (best) BASIC12.37□□□□□ -0.43
CDX1P47902 AC087499.6-201ENST00000411576 835 ntBASIC12.37□□□□□ -0.43
CDX1P47902 AC015922.1-201ENST00000421102 1152 ntBASIC12.37□□□□□ -0.43
CDX1P47902 RASL12-203ENST00000434605 982 ntTSL 2 BASIC12.37□□□□□ -0.43
CDX1P47902 CRB3P1-201ENST00000449338 276 ntBASIC12.37□□□□□ -0.43
CDX1P47902 PDCD6-202ENST00000505221 672 ntTSL 3 BASIC12.37□□□□□ -0.43
CDX1P47902 AC093004.1-201ENST00000508850 424 ntBASIC12.37□□□□□ -0.43
CDX1P47902 TIMM17BP1-201ENST00000545713 516 ntBASIC12.37□□□□□ -0.43
CDX1P47902 AL928654.4-206ENST00000551180 980 ntAPPRIS ALT2 TSL 5 BASIC12.37□□□□□ -0.43
CDX1P47902 PPHLN1-221ENST00000552761 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC12.37□□□□□ -0.43
CDX1P47902 NDUFA4L2-206ENST00000556732 883 ntTSL 3 BASIC12.37□□□□□ -0.43
CDX1P47902 TGIF2-C20orf24-201ENST00000558530 918 ntAPPRIS P1 TSL 3 BASIC12.37□□□□□ -0.43
CDX1P47902 AC025048.3-201ENST00000590609 569 ntBASIC12.37□□□□□ -0.43
CDX1P47902 ZNF324B-203ENST00000594214 564 ntTSL 2 BASIC12.37□□□□□ -0.43
CDX1P47902 MARCH2-206ENST00000601283 747 ntTSL 3 BASIC12.37□□□□□ -0.43
CDX1P47902 AC073263.1-201ENST00000616370 494 ntTSL 3 BASIC12.37□□□□□ -0.43
CDX1P47902 AC005702.4-201ENST00000618393 416 ntBASIC12.37□□□□□ -0.43
CDX1P47902 C11orf53-203ENST00000637637 1049 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
CDX1P47902 AL109936.8-201ENST00000641772 604 ntBASIC12.37□□□□□ -0.43
CDX1P47902 STXBP6-201ENST00000323944 4132 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
CDX1P47902 GLMP-213ENST00000612353 1365 ntAPPRIS ALT2 TSL 5 BASIC12.37□□□□□ -0.43
CDX1P47902 GLMP-215ENST00000622703 1364 ntAPPRIS ALT2 TSL 2 BASIC12.37□□□□□ -0.43
CDX1P47902 ACTL6A-203ENST00000450518 1750 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
CDX1P47902 CNGA4-201ENST00000379936 1863 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
CDX1P47902 SPDEF-202ENST00000544425 1866 ntAPPRIS ALT1 TSL 2 BASIC12.37□□□□□ -0.43
CDX1P47902 AL591623.1-201ENST00000417786 1960 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
CDX1P47902 ANO10-205ENST00000414522 2450 ntTSL 2 BASIC12.37□□□□□ -0.43
CDX1P47902 AC005523.2-201ENST00000601192 3568 ntTSL 4 BASIC12.37□□□□□ -0.43
CDX1P47902 PITPNM2-201ENST00000280562 6785 ntAPPRIS ALT2 TSL 5 BASIC12.37□□□□□ -0.43
CDX1P47902 MBOAT2-201ENST00000305997 7751 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
CDX1P47902 TNK2-202ENST00000381916 4223 ntTSL 2 BASIC12.37□□□□□ -0.43
CDX1P47902 RPS6KC1-207ENST00000543470 4227 ntTSL 2 BASIC12.37□□□□□ -0.43
CDX1P47902 AMPD2-219ENST00000528667 3134 ntAPPRIS P2 TSL 1 (best) BASIC12.37□□□□□ -0.43
CDX1P47902 ZNF618-207ENST00000615615 9289 ntAPPRIS ALT2 TSL 1 (best) BASIC12.37□□□□□ -0.43
CDX1P47902 WNT3A-201ENST00000284523 2932 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
CDX1P47902 STAT4-202ENST00000392320 2822 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
CDX1P47902 STEAP2-201ENST00000287908 6873 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
CDX1P47902 B4GALT6-201ENST00000237019 2128 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
CDX1P47902 PYROXD2-201ENST00000370575 2028 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
CDX1P47902 MROH1-209ENST00000534366 5092 ntAPPRIS ALT2 TSL 1 (best) BASIC12.37□□□□□ -0.43
CDX1P47902 HMGA2-204ENST00000403681 4473 ntAPPRIS P3 TSL 1 (best) BASIC12.37□□□□□ -0.43
CDX1P47902 LINC01301-205ENST00000531654 1347 ntTSL 5 BASIC12.37□□□□□ -0.43
CDX1P47902 RADIL-201ENST00000399583 3689 ntAPPRIS P1 TSL 5 BASIC12.36□□□□□ -0.43
CDX1P47902 CLEC16A-202ENST00000409552 3365 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
CDX1P47902 HNRNPU-226ENST00000640218 6858 ntAPPRIS ALT2 TSL 1 (best) BASIC12.36□□□□□ -0.43
CDX1P47902 AC015909.5-201ENST00000624336 2266 ntBASIC12.36□□□□□ -0.43
CDX1P47902 AC092535.1-201ENST00000417557 2165 ntTSL 2 BASIC12.36□□□□□ -0.43
CDX1P47902 PSMD13-212ENST00000532097 1991 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
CDX1P47902 HMGA1-204ENST00000401473 1887 ntAPPRIS ALT1 TSL 1 (best) BASIC12.36□□□□□ -0.43
CDX1P47902 ADCY3-202ENST00000405392 4397 ntAPPRIS ALT1 TSL 1 (best) BASIC12.36□□□□□ -0.43
CDX1P47902 ATF7-205ENST00000548446 1892 ntAPPRIS ALT1 TSL 2 BASIC12.36□□□□□ -0.43
CDX1P47902 MAP3K12-203ENST00000547035 2944 ntAPPRIS ALT2 TSL 5 BASIC12.36□□□□□ -0.43
CDX1P47902 PITX2-204ENST00000394595 1693 ntTSL 5 BASIC12.36□□□□□ -0.43
CDX1P47902 IMPACT-201ENST00000284202 3792 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
CDX1P47902 PML-201ENST00000268058 4508 ntAPPRIS P4 TSL 1 (best) BASIC12.36□□□□□ -0.43
CDX1P47902 AC007541.1-201ENST00000570282 1469 ntBASIC12.36□□□□□ -0.43
CDX1P47902 POLN-210ENST00000511885 3253 ntAPPRIS P1 TSL 5 BASIC12.36□□□□□ -0.43
CDX1P47902 AFAP1-201ENST00000358461 7516 ntAPPRIS P3 TSL 2 BASIC12.36□□□□□ -0.43
CDX1P47902 H2BFWT-201ENST00000217926 894 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
CDX1P47902 NME3-201ENST00000219302 1069 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
CDX1P47902 TM4SF19-201ENST00000273695 1022 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
CDX1P47902 ITGB2-201ENST00000302347 2955 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
CDX1P47902 AGER-204ENST00000375067 1250 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
CDX1P47902 PABPN1L-202ENST00000419291 1272 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
CDX1P47902 VAT1-202ENST00000420567 1069 ntTSL 2 BASIC12.36□□□□□ -0.43
CDX1P47902 DFFBP1-201ENST00000433250 979 ntBASIC12.36□□□□□ -0.43
Retrieved 100 of 98,524 protein–RNA pairs in 29 ms