Protein–RNA interactions for Protein: O00570

SOX1, Transcription factor SOX-1, humanhuman

Predicted RBP Predictions only

Length 391 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX1O00570 SLC22A3-201ENST00000275300 3348 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
SOX1O00570 VSIG10L2-202ENST00000638636 2304 ntAPPRIS P1 TSL 5 BASIC15.66■□□□□ 0.1
SOX1O00570 GCNT7-201ENST00000243913 2064 ntTSL 2 BASIC15.66■□□□□ 0.1
SOX1O00570 ONECUT1-201ENST00000305901 2092 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
SOX1O00570 HYOU1-218ENST00000614668 1569 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
SOX1O00570 PDGFB-201ENST00000331163 3497 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
SOX1O00570 PCNX2-201ENST00000258229 7518 ntAPPRIS P2 TSL 5 BASIC15.66■□□□□ 0.1
SOX1O00570 PSMD13-212ENST00000532097 1991 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
SOX1O00570 MAP4K3-202ENST00000341681 4271 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
SOX1O00570 OXA1L-201ENST00000285848 1719 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
SOX1O00570 SYNE3-202ENST00000553340 2615 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
SOX1O00570 TMEM169-204ENST00000437356 1634 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
SOX1O00570 NECTIN1-203ENST00000341398 1377 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
SOX1O00570 WASH3P-207ENST00000560956 1394 ntBASIC15.65■□□□□ 0.1
SOX1O00570 AC080080.1-201ENST00000625121 2420 ntBASIC15.65■□□□□ 0.1
SOX1O00570 ARHGAP35-201ENST00000404338 8889 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
SOX1O00570 KCTD6-205ENST00000490264 1759 ntAPPRIS P1 TSL 5 BASIC15.65■□□□□ 0.1
SOX1O00570 AP001094.4-201ENST00000579008 2176 ntBASIC15.65■□□□□ 0.1
SOX1O00570 SHTN1-202ENST00000355371 5361 ntAPPRIS ALT1 TSL 2 BASIC15.65■□□□□ 0.1
SOX1O00570 GPS1-202ENST00000320548 1949 ntTSL 2 BASIC15.65■□□□□ 0.1
SOX1O00570 PHF1-202ENST00000374516 2330 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
SOX1O00570 U2AF1L4-201ENST00000292879 729 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
SOX1O00570 IFNLR1-204ENST00000374419 953 ntTSL 5 BASIC15.65■□□□□ 0.1
SOX1O00570 ADARB2-AS1-201ENST00000381301 625 ntTSL 2 BASIC15.65■□□□□ 0.1
SOX1O00570 ACTG2-204ENST00000409918 927 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
SOX1O00570 RBPMSLP-201ENST00000433427 502 ntBASIC15.65■□□□□ 0.1
SOX1O00570 LINC01502-203ENST00000447907 880 ntTSL 3 BASIC15.65■□□□□ 0.1
SOX1O00570 RN7SL173P-201ENST00000461853 292 ntBASIC15.65■□□□□ 0.1
SOX1O00570 SEPHS2P1-201ENST00000511618 1162 ntBASIC15.65■□□□□ 0.1
SOX1O00570 RPS23-207ENST00000511844 530 ntTSL 2 BASIC15.65■□□□□ 0.1
SOX1O00570 PAGE3-202ENST00000519203 577 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
SOX1O00570 TMEM123-208ENST00000532161 743 ntAPPRIS ALT2 TSL 3 BASIC15.65■□□□□ 0.1
SOX1O00570 AC003043.1-201ENST00000588260 337 ntTSL 3 BASIC15.65■□□□□ 0.1
SOX1O00570 PHYH-203ENST00000396920 1829 ntTSL 5 BASIC15.65■□□□□ 0.1
SOX1O00570 TRAM1-201ENST00000262213 2785 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
SOX1O00570 TMEM9B-202ENST00000525069 1433 ntTSL 2 BASIC15.65■□□□□ 0.1
SOX1O00570 BNIP2-213ENST00000612191 2515 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
SOX1O00570 UBXN11-202ENST00000357089 1555 ntAPPRIS ALT2 TSL 5 BASIC15.65■□□□□ 0.1
SOX1O00570 GJB1-203ENST00000374029 1587 ntAPPRIS P1 TSL 5 BASIC15.65■□□□□ 0.1
SOX1O00570 FAS-202ENST00000352159 1722 ntTSL 5 BASIC15.65■□□□□ 0.1
SOX1O00570 FBXL21-202ENST00000467490 1742 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
SOX1O00570 TSPAN3-205ENST00000558745 1340 ntTSL 5 BASIC15.65■□□□□ 0.1
SOX1O00570 AGBL5-202ENST00000360131 3177 ntAPPRIS P3 TSL 1 (best) BASIC15.65■□□□□ 0.1
SOX1O00570 ADIRF-AS1-201ENST00000418273 2627 ntTSL 3 BASIC15.64■□□□□ 0.1
SOX1O00570 ZBTB44-201ENST00000357899 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC15.64■□□□□ 0.09
SOX1O00570 IFFO1-211ENST00000615885 2775 ntTSL 5 BASIC15.64■□□□□ 0.09
SOX1O00570 DNM1-216ENST00000634267 2909 ntTSL 5 BASIC15.64■□□□□ 0.09
SOX1O00570 FAM181B-201ENST00000329203 3924 ntAPPRIS P1 BASIC15.64■□□□□ 0.09
SOX1O00570 ALDOA-225ENST00000569545 1359 ntAPPRIS P2 TSL 5 BASIC15.64■□□□□ 0.09
SOX1O00570 PODXL-202ENST00000378555 2105 ntAPPRIS P3 TSL 1 (best) BASIC15.64■□□□□ 0.09
SOX1O00570 VPS51-201ENST00000279281 2714 ntAPPRIS P2 TSL 1 (best) BASIC15.64■□□□□ 0.09
SOX1O00570 ZNF232-201ENST00000250076 2179 ntAPPRIS P3 TSL 5 BASIC15.64■□□□□ 0.09
SOX1O00570 TMEM60-201ENST00000257663 1023 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
SOX1O00570 IGSF8-201ENST00000314485 2343 ntAPPRIS P2 TSL 1 (best) BASIC15.64■□□□□ 0.09
SOX1O00570 EPN2-201ENST00000314728 4871 ntAPPRIS P4 TSL 1 (best) BASIC15.64■□□□□ 0.09
SOX1O00570 CLIP4-201ENST00000320081 4293 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
SOX1O00570 LGALS12-202ENST00000340246 1425 ntAPPRIS ALT2 TSL 1 (best) BASIC15.64■□□□□ 0.09
SOX1O00570 GYG2-201ENST00000353656 1293 ntAPPRIS ALT2 TSL 5 BASIC15.64■□□□□ 0.09
SOX1O00570 MIR645-201ENST00000385283 94 ntBASIC15.64■□□□□ 0.09
SOX1O00570 RPS9-202ENST00000391751 510 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
SOX1O00570 AC015691.1-201ENST00000394793 535 ntTSL 3 BASIC15.64■□□□□ 0.09
SOX1O00570 GPAT3-202ENST00000395226 2631 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
SOX1O00570 ATF4-202ENST00000396680 1419 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
SOX1O00570 TMEM216-202ENST00000398979 908 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
SOX1O00570 THAP4-202ENST00000402136 785 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
SOX1O00570 MACROD2-204ENST00000407045 727 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
SOX1O00570 AMIGO2-202ENST00000429635 3058 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
SOX1O00570 IFNWP2-201ENST00000431203 580 ntBASIC15.64■□□□□ 0.09
SOX1O00570 RPL15-208ENST00000435882 1063 ntAPPRIS P1 TSL 2 BASIC15.64■□□□□ 0.09
SOX1O00570 PEBP1P3-201ENST00000455475 548 ntBASIC15.64■□□□□ 0.09
SOX1O00570 C5orf38-207ENST00000515640 1441 ntAPPRIS ALT2 TSL 3 BASIC15.64■□□□□ 0.09
SOX1O00570 AC104964.1-201ENST00000520494 489 ntTSL 2 BASIC15.64■□□□□ 0.09
SOX1O00570 NACA-221ENST00000552540 1074 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
SOX1O00570 MT2A-202ENST00000561491 581 ntTSL 2 BASIC15.64■□□□□ 0.09
SOX1O00570 AC009093.2-201ENST00000563477 546 ntTSL 4 BASIC15.64■□□□□ 0.09
SOX1O00570 KIF22-208ENST00000569382 2020 ntTSL 5 BASIC15.64■□□□□ 0.09
SOX1O00570 AC004231.3-201ENST00000579136 258 ntTSL 3 BASIC15.64■□□□□ 0.09
SOX1O00570 SH2D3C-213ENST00000629203 2478 ntTSL 2 BASIC15.64■□□□□ 0.09
SOX1O00570 KCNC1-202ENST00000379472 7965 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
SOX1O00570 CERCAM-201ENST00000372838 2685 ntAPPRIS P3 TSL 1 (best) BASIC15.64■□□□□ 0.09
SOX1O00570 STUM-201ENST00000366788 7705 ntAPPRIS P2 TSL 5 BASIC15.64■□□□□ 0.09
SOX1O00570 LRFN3-201ENST00000246529 2513 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
SOX1O00570 BPGM-201ENST00000344924 1753 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
SOX1O00570 CRAMP1-201ENST00000293925 7671 ntAPPRIS P1 TSL 5 BASIC15.64■□□□□ 0.09
SOX1O00570 PAPLN-202ENST00000340738 5834 ntAPPRIS P2 TSL 5 BASIC15.64■□□□□ 0.09
SOX1O00570 AC011287.1-201ENST00000639998 1349 ntTSL 5 BASIC15.64■□□□□ 0.09
SOX1O00570 TOM1-206ENST00000425375 2252 ntTSL 2 BASIC15.64■□□□□ 0.09
SOX1O00570 ABLIM2-203ENST00000361737 3396 ntAPPRIS ALT2 TSL 2 BASIC15.64■□□□□ 0.09
SOX1O00570 PARD3-206ENST00000374776 3389 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
SOX1O00570 KIFC3-203ENST00000445690 3379 ntAPPRIS ALT2 TSL 1 (best) BASIC15.64■□□□□ 0.09
SOX1O00570 HSPB7-204ENST00000411503 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC15.64■□□□□ 0.09
SOX1O00570 AC226118.1-201ENST00000515213 2146 ntTSL 2 BASIC15.64■□□□□ 0.09
SOX1O00570 ELFN2-208ENST00000430883 1970 ntTSL 2 BASIC15.64■□□□□ 0.09
SOX1O00570 THUMPD3-AS1-212ENST00000520447 1809 ntTSL 5 BASIC15.64■□□□□ 0.09
SOX1O00570 GPR61-206ENST00000616874 2459 ntAPPRIS P1 TSL 2 BASIC15.63■□□□□ 0.09
SOX1O00570 SIGLEC8-203ENST00000430817 1528 ntTSL 2 BASIC15.63■□□□□ 0.09
SOX1O00570 CTCFL-210ENST00000481655 1512 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
SOX1O00570 ZC3H14-204ENST00000336693 2007 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
SOX1O00570 CHRNA7-217ENST00000636603 2012 ntTSL 5 BASIC15.63■□□□□ 0.09
SOX1O00570 ARMC5-203ENST00000457010 4844 ntAPPRIS P3 TSL 1 (best) BASIC15.63■□□□□ 0.09
Retrieved 100 of 98,524 protein–RNA pairs in 49.6 ms