RNA–Protein interactions for RNA: ENST00000374516.7

PHF1-202, Transcript of PHD finger protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PHF1, Length 2,330 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHF1-202ENST00000374516 NISCHQ9Y2I1 1504 aa36.4■■■■□ 3.42
PHF1-202ENST00000374516 CCDC180Q9P1Z9 1646 aa31.28■■■□□ 2.6
PHF1-202ENST00000374516 ZCCHC6Q5VYS8 1495 aaKnown RBP30.63■■■□□ 2.49
PHF1-202ENST00000374516 SHROOM4Q9ULL8 1493 aa30.46■■■□□ 2.47
PHF1-202ENST00000374516 DCAF8L2P0C7V8 631 aa30.4■■■□□ 2.46
PHF1-202ENST00000374516 DCAF1Q9Y4B6 1507 aa29.89■■■□□ 2.38
PHF1-202ENST00000374516 ABCC9O60706 1549 aa29.6■■■□□ 2.33
PHF1-202ENST00000374516 SUPT5HO00267 1087 aaKnown RBP29.56■■■□□ 2.32
PHF1-202ENST00000374516 MYO15BQ96JP2 1530 aa29.31■■■□□ 2.28
PHF1-202ENST00000374516 SCRIBQ14160 1630 aa29.17■■■□□ 2.26
PHF1-202ENST00000374516 NACADO15069 1562 aa29.11■■■□□ 2.25
PHF1-202ENST00000374516 RB1CC1Q8TDY2 1594 aa28.79■■■□□ 2.2
PHF1-202ENST00000374516 RSF1Q96T23 1441 aaPredicted RBP28.52■■■□□ 2.16
PHF1-202ENST00000374516 CECR2Q9BXF3 1484 aa28.42■■■□□ 2.14
PHF1-202ENST00000374516 CHIC1Q5VXU3 224 aa28.39■■■□□ 2.14
PHF1-202ENST00000374516 UNC13AQ9UPW8 1703 aa28.28■■■□□ 2.12
PHF1-202ENST00000374516 MROH2BQ7Z745 1585 aa28.25■■■□□ 2.11
PHF1-202ENST00000374516 PABPN1Q86U42 306 aaKnown RBP eCLIP28.17■■■□□ 2.15e-7■■■□□ 18
PHF1-202ENST00000374516 WIZO95785 1651 aa28.04■■■□□ 2.08
PHF1-202ENST00000374516 BAZ1AQ9NRL2 1556 aaPredicted RBP28.02■■■□□ 2.08
PHF1-202ENST00000374516 BICRAQ9NZM4 1560 aa28■■■□□ 2.07
PHF1-202ENST00000374516 HRCP23327 699 aa27.87■■■□□ 2.05
PHF1-202ENST00000374516 SMARCA4P51532 1647 aa27.86■■■□□ 2.05
PHF1-202ENST00000374516 TRIM41Q8WV44 630 aa27.62■■■□□ 2.01
PHF1-202ENST00000374516 TOP2AP11388 1531 aaKnown RBP27.61■■■□□ 2.01
PHF1-202ENST00000374516 LOC105371045A0A1W2PR82 267 aa27.51■■□□□ 1.99
PHF1-202ENST00000374516 PCGF6Q9BYE7 350 aa27.51■■□□□ 1.99
PHF1-202ENST00000374516 CCDC88BA6NC98 1476 aa27.49■■□□□ 1.99
PHF1-202ENST00000374516 SMARCA2P51531 1590 aa27.43■■□□□ 1.98
PHF1-202ENST00000374516 PEG3Q9GZU2 1588 aa27.37■■□□□ 1.97
PHF1-202ENST00000374516 ATAD2BQ9ULI0 1458 aa27.34■■□□□ 1.97
PHF1-202ENST00000374516 FAM9AQ8IZU1 332 aaPredicted RBP27.33■■□□□ 1.97
PHF1-202ENST00000374516 EIF4G1Q04637 1599 aaKnown RBP27.32■■□□□ 1.96
PHF1-202ENST00000374516 BAZ1BQ9UIG0 1483 aaKnown RBP27.22■■□□□ 1.95
PHF1-202ENST00000374516 PPARGC1BQ86YN6 1023 aaKnown RBP27.21■■□□□ 1.95
PHF1-202ENST00000374516 ABCC8Q09428 1581 aa27.15■■□□□ 1.94
PHF1-202ENST00000374516 EHMT2Q96KQ7 1210 aa27.1■■□□□ 1.93
PHF1-202ENST00000374516 NCAPD3P42695 1498 aa26.95■■□□□ 1.91
PHF1-202ENST00000374516 HMGXB3Q12766 1538 aa26.87■■□□□ 1.89
PHF1-202ENST00000374516 TRIM26Q12899 539 aaPredicted RBP26.85■■□□□ 1.89
PHF1-202ENST00000374516 WRNQ14191 1432 aaPredicted RBP eCLIP26.82■■□□□ 1.88
PHF1-202ENST00000374516 SOGA1O94964 1423 aa26.78■■□□□ 1.88
PHF1-202ENST00000374516 SYNJ1O43426 1573 aa26.68■■□□□ 1.86
PHF1-202ENST00000374516 RUSC2Q8N2Y8 1516 aa26.67■■□□□ 1.86
PHF1-202ENST00000374516 CC2D2AQ9P2K1 1620 aa26.64■■□□□ 1.86
PHF1-202ENST00000374516 CSRNP3Q8WYN3 585 aa26.59■■□□□ 1.85
PHF1-202ENST00000374516 CFTRP13569 1480 aa26.53■■□□□ 1.84
PHF1-202ENST00000374516 EEA1Q15075 1411 aa26.53■■□□□ 1.84
PHF1-202ENST00000374516 ZEB1P37275 1124 aaPredicted RBP26.5■■□□□ 1.83
PHF1-202ENST00000374516 TOP2BQ02880 1626 aa26.44■■□□□ 1.82
PHF1-202ENST00000374516 UBTFP17480 764 aaKnown RBP26.41■■□□□ 1.82
PHF1-202ENST00000374516 CADPSQ9ULU8 1353 aa26.39■■□□□ 1.81
PHF1-202ENST00000374516 CUX1P39880 1505 aa26.34■■□□□ 1.81
PHF1-202ENST00000374516 BIVM-ERCC5R4GMW8 1640 aa26.34■■□□□ 1.81
PHF1-202ENST00000374516 TNIKQ9UKE5 1360 aa26.33■■□□□ 1.8
PHF1-202ENST00000374516 CEP162Q5TB80 1403 aa26.29■■□□□ 1.8
PHF1-202ENST00000374516 GOLGA3Q08378 1498 aa26.29■■□□□ 1.8
PHF1-202ENST00000374516 CEP164Q9UPV0 1460 aa26.23■■□□□ 1.79
PHF1-202ENST00000374516 PRDM2Q13029 1718 aa26.21■■□□□ 1.79
PHF1-202ENST00000374516 DNAJC5BQ9UF47 199 aa26.19■■□□□ 1.78
PHF1-202ENST00000374516 KIF21BO75037 1637 aa26.17■■□□□ 1.78
PHF1-202ENST00000374516 RAPGEF2Q9Y4G8 1499 aa26.15■■□□□ 1.78
PHF1-202ENST00000374516 NESP48681 1621 aa26.14■■□□□ 1.78
PHF1-202ENST00000374516 PELP1Q8IZL8 1130 aaKnown RBP26.13■■□□□ 1.77
PHF1-202ENST00000374516 FANCD2Q9BXW9 1451 aa26.11■■□□□ 1.77
PHF1-202ENST00000374516 KIF27Q86VH2 1401 aa26.07■■□□□ 1.76
PHF1-202ENST00000374516 RANGAP1P46060 587 aaPredicted RBP26.06■■□□□ 1.76
PHF1-202ENST00000374516 TTBK1Q5TCY1 1321 aaPredicted RBP26.02■■□□□ 1.76
PHF1-202ENST00000374516 SCAF1Q9H7N4 1312 aaKnown RBP26.02■■□□□ 1.76
PHF1-202ENST00000374516 FGD5Q6ZNL6 1462 aa26■■□□□ 1.75
PHF1-202ENST00000374516 PRXQ9BXM0 1461 aa26■■□□□ 1.75
PHF1-202ENST00000374516 CLIP1P30622 1438 aa25.98■■□□□ 1.75
PHF1-202ENST00000374516 CUX2O14529 1486 aa25.96■■□□□ 1.75
PHF1-202ENST00000374516 LAMC3Q9Y6N6 1575 aa25.9■■□□□ 1.74
PHF1-202ENST00000374516 ERICH3Q5RHP9 1530 aa25.9■■□□□ 1.74
PHF1-202ENST00000374516 IGF1RP08069 1367 aa25.86■■□□□ 1.73
PHF1-202ENST00000374516 TOPBP1Q92547 1522 aa25.85■■□□□ 1.73
PHF1-202ENST00000374516 DNMBPQ6XZF7 1577 aa25.85■■□□□ 1.73
PHF1-202ENST00000374516 RAD54L2Q9Y4B4 1467 aa25.83■■□□□ 1.73
PHF1-202ENST00000374516 POLA1P09884 1462 aaPredicted RBP25.8■■□□□ 1.72
PHF1-202ENST00000374516 PDS5BQ9NTI5 1447 aa25.78■■□□□ 1.72
PHF1-202ENST00000374516 URB2Q14146 1524 aaKnown RBP25.76■■□□□ 1.71
PHF1-202ENST00000374516 VPS8Q8N3P4 1428 aa25.76■■□□□ 1.71
PHF1-202ENST00000374516 CARMIL1Q5VZK9 1371 aa25.74■■□□□ 1.71
PHF1-202ENST00000374516 ABCA10Q8WWZ4 1543 aa25.68■■□□□ 1.7
PHF1-202ENST00000374516 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP25.68■■□□□ 1.7
PHF1-202ENST00000374516 KIF21AQ7Z4S6 1674 aa25.66■■□□□ 1.7
PHF1-202ENST00000374516 APLP2Q06481 763 aa25.65■■□□□ 1.7
PHF1-202ENST00000374516 CCER1Q8TC90 406 aaPredicted RBP25.64■■□□□ 1.69
PHF1-202ENST00000374516 ARAP1Q96P48 1450 aa25.63■■□□□ 1.69
PHF1-202ENST00000374516 ACIN1Q9UKV3 1341 aaKnown RBP25.6■■□□□ 1.69
PHF1-202ENST00000374516 TDRD9Q8NDG6 1382 aaKnown RBP25.59■■□□□ 1.69
PHF1-202ENST00000374516 ARHGAP35Q9NRY4 1499 aa25.55■■□□□ 1.68
PHF1-202ENST00000374516 NEUROD1Q13562 356 aa25.52■■□□□ 1.68
PHF1-202ENST00000374516 WDR97A6NE52 1622 aa25.47■■□□□ 1.67
PHF1-202ENST00000374516 DIEXFQ68CQ4 756 aaKnown RBP25.45■■□□□ 1.66
PHF1-202ENST00000374516 GAPVD1Q14C86 1478 aa25.44■■□□□ 1.66
PHF1-202ENST00000374516 KANK4Q5T7N3 995 aaPredicted RBP25.42■■□□□ 1.66
PHF1-202ENST00000374516 P3H3Q8IVL6 736 aa25.42■■□□□ 1.66
PHF1-202ENST00000374516 MRC2Q9UBG0 1479 aa25.4■■□□□ 1.66
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms