RNA–Protein interactions for RNA: ENST00000341398.6

NECTIN1-203, Transcript of nectin cell adhesion molecule 1, humanhuman

TSL 1 (best) BASIC

Gene NECTIN1, Length 1,377 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NECTIN1-203ENST00000341398 NISCHQ9Y2I1 1504 aa32.48■■■□□ 2.79
NECTIN1-203ENST00000341398 CCDC180Q9P1Z9 1646 aa29.17■■■□□ 2.26
NECTIN1-203ENST00000341398 ABCC9O60706 1549 aa29.13■■■□□ 2.25
NECTIN1-203ENST00000341398 RB1CC1Q8TDY2 1594 aa27.78■■■□□ 2.04
NECTIN1-203ENST00000341398 DNAJC5BQ9UF47 199 aa27.6■■■□□ 2.01
NECTIN1-203ENST00000341398 NACADO15069 1562 aa27.59■■■□□ 2.01
NECTIN1-203ENST00000341398 DCAF8L2P0C7V8 631 aa27.54■■■□□ 2
NECTIN1-203ENST00000341398 MYO15BQ96JP2 1530 aa27.2■■□□□ 1.95
NECTIN1-203ENST00000341398 PABPN1Q86U42 306 aaKnown RBP eCLIP27.14■■□□□ 1.94
NECTIN1-203ENST00000341398 UNC13AQ9UPW8 1703 aa27.11■■□□□ 1.93
NECTIN1-203ENST00000341398 ZCCHC6Q5VYS8 1495 aaKnown RBP26.88■■□□□ 1.89
NECTIN1-203ENST00000341398 BICRAQ9NZM4 1560 aa26.87■■□□□ 1.89
NECTIN1-203ENST00000341398 DCAF1Q9Y4B6 1507 aa26.85■■□□□ 1.89
NECTIN1-203ENST00000341398 SHROOM4Q9ULL8 1493 aa26.6■■□□□ 1.85
NECTIN1-203ENST00000341398 SCRIBQ14160 1630 aa26.53■■□□□ 1.84
NECTIN1-203ENST00000341398 CC2D2AQ9P2K1 1620 aa26.32■■□□□ 1.8
NECTIN1-203ENST00000341398 CECR2Q9BXF3 1484 aa26.26■■□□□ 1.79
NECTIN1-203ENST00000341398 EIF4G1Q04637 1599 aaKnown RBP26.26■■□□□ 1.79
NECTIN1-203ENST00000341398 DNAJC5Q9H3Z4 198 aa25.82■■□□□ 1.72
NECTIN1-203ENST00000341398 NCAPD3P42695 1498 aa25.45■■□□□ 1.66
NECTIN1-203ENST00000341398 ATAD2BQ9ULI0 1458 aa25.35■■□□□ 1.65
NECTIN1-203ENST00000341398 SMARCA2P51531 1590 aa25.33■■□□□ 1.65
NECTIN1-203ENST00000341398 SMARCA4P51532 1647 aa25.33■■□□□ 1.64
NECTIN1-203ENST00000341398 HMGXB3Q12766 1538 aa25.25■■□□□ 1.63
NECTIN1-203ENST00000341398 BAZ1AQ9NRL2 1556 aaPredicted RBP25.24■■□□□ 1.63
NECTIN1-203ENST00000341398 ERCC6Q03468 1493 aa25.22■■□□□ 1.63
NECTIN1-203ENST00000341398 BAZ1BQ9UIG0 1483 aaKnown RBP25.14■■□□□ 1.62
NECTIN1-203ENST00000341398 CUX2O14529 1486 aa25.14■■□□□ 1.61
NECTIN1-203ENST00000341398 PEG3Q9GZU2 1588 aa25.08■■□□□ 1.61
NECTIN1-203ENST00000341398 NESP48681 1621 aa24.99■■□□□ 1.59
NECTIN1-203ENST00000341398 MROH2BQ7Z745 1585 aa24.99■■□□□ 1.59
NECTIN1-203ENST00000341398 LAMC3Q9Y6N6 1575 aa24.9■■□□□ 1.58
NECTIN1-203ENST00000341398 PDS5BQ9NTI5 1447 aa24.79■■□□□ 1.56
NECTIN1-203ENST00000341398 THOC2Q8NI27 1593 aaKnown RBP24.73■■□□□ 1.55
NECTIN1-203ENST00000341398 WIZO95785 1651 aa24.71■■□□□ 1.55
NECTIN1-203ENST00000341398 KIF21AQ7Z4S6 1674 aa24.7■■□□□ 1.55
NECTIN1-203ENST00000341398 CADPSQ9ULU8 1353 aa24.69■■□□□ 1.54
NECTIN1-203ENST00000341398 MRC2Q9UBG0 1479 aa24.51■■□□□ 1.51
NECTIN1-203ENST00000341398 RSF1Q96T23 1441 aaPredicted RBP24.5■■□□□ 1.51
NECTIN1-203ENST00000341398 CEP164Q9UPV0 1460 aa24.44■■□□□ 1.5
NECTIN1-203ENST00000341398 WDR62O43379 1518 aa24.42■■□□□ 1.5
NECTIN1-203ENST00000341398 TOP2AP11388 1531 aaKnown RBP24.41■■□□□ 1.5
NECTIN1-203ENST00000341398 TRIM41Q8WV44 630 aa24.41■■□□□ 1.5
NECTIN1-203ENST00000341398 FANCD2Q9BXW9 1451 aa24.4■■□□□ 1.5
NECTIN1-203ENST00000341398 CFTRP13569 1480 aa24.39■■□□□ 1.5
NECTIN1-203ENST00000341398 PRDM2Q13029 1718 aa24.19■■□□□ 1.46
NECTIN1-203ENST00000341398 URB2Q14146 1524 aaKnown RBP24.15■■□□□ 1.46
NECTIN1-203ENST00000341398 CCDC88BA6NC98 1476 aa24.14■■□□□ 1.46
NECTIN1-203ENST00000341398 OSCARQ8IYS5 282 aa24.07■■□□□ 1.44
NECTIN1-203ENST00000341398 ABCC8Q09428 1581 aa23.97■■□□□ 1.43
NECTIN1-203ENST00000341398 IFT140Q96RY7 1462 aa23.95■■□□□ 1.42
NECTIN1-203ENST00000341398 TOPBP1Q92547 1522 aa23.92■■□□□ 1.42
NECTIN1-203ENST00000341398 DNMBPQ6XZF7 1577 aa23.85■■□□□ 1.41
NECTIN1-203ENST00000341398 ZNF608Q9ULD9 1512 aaPredicted RBP23.84■■□□□ 1.41
NECTIN1-203ENST00000341398 EIF4G3O43432 1585 aaKnown RBP23.73■■□□□ 1.39
NECTIN1-203ENST00000341398 TARBP1Q13395 1621 aaKnown RBP23.69■■□□□ 1.38
NECTIN1-203ENST00000341398 AQRO60306 1485 aaKnown RBP eCLIP23.67■■□□□ 1.38
NECTIN1-203ENST00000341398 POLA1P09884 1462 aaPredicted RBP23.66■■□□□ 1.38
NECTIN1-203ENST00000341398 RIMBP3CA6NJZ7 1639 aa23.65■■□□□ 1.38
NECTIN1-203ENST00000341398 RIMBP3BA6NNM3 1639 aa23.65■■□□□ 1.38
NECTIN1-203ENST00000341398 RIMBP3Q9UFD9 1639 aa23.65■■□□□ 1.38
NECTIN1-203ENST00000341398 SOGA1O94964 1423 aa23.62■■□□□ 1.37
NECTIN1-203ENST00000341398 FBLN2P98095 1184 aa23.62■■□□□ 1.37
NECTIN1-203ENST00000341398 CHD1O14646 1710 aa23.58■■□□□ 1.36
NECTIN1-203ENST00000341398 RAD54L2Q9Y4B4 1467 aa23.57■■□□□ 1.36
NECTIN1-203ENST00000341398 ARHGEF11O15085 1522 aa23.57■■□□□ 1.36
NECTIN1-203ENST00000341398 TDRD9Q8NDG6 1382 aaKnown RBP23.54■■□□□ 1.36
NECTIN1-203ENST00000341398 FGD5Q6ZNL6 1462 aa23.53■■□□□ 1.36
NECTIN1-203ENST00000341398 SUPT5HO00267 1087 aaKnown RBP23.52■■□□□ 1.36
NECTIN1-203ENST00000341398 WDR97A6NE52 1622 aa23.51■■□□□ 1.35
NECTIN1-203ENST00000341398 CUX1P39880 1505 aa23.48■■□□□ 1.35
NECTIN1-203ENST00000341398 CYB5RLQ6IPT4 315 aa23.48■■□□□ 1.35
NECTIN1-203ENST00000341398 CHMP7Q8WUX9 453 aaPredicted RBP23.45■■□□□ 1.34
NECTIN1-203ENST00000341398 SNAPC4Q5SXM2 1469 aa23.42■■□□□ 1.34
NECTIN1-203ENST00000341398 GRIN2BQ13224 1484 aa23.41■■□□□ 1.34
NECTIN1-203ENST00000341398 MAGI1Q96QZ7 1491 aaPredicted RBP23.41■■□□□ 1.34
NECTIN1-203ENST00000341398 SYNJ1O43426 1573 aa23.34■■□□□ 1.33
NECTIN1-203ENST00000341398 GAPVD1Q14C86 1478 aa23.32■■□□□ 1.32
NECTIN1-203ENST00000341398 SYNJ2O15056 1496 aa23.31■■□□□ 1.32
NECTIN1-203ENST00000341398 ARAP1Q96P48 1450 aa23.31■■□□□ 1.32
NECTIN1-203ENST00000341398 PBRM1Q86U86 1689 aa23.29■■□□□ 1.32
NECTIN1-203ENST00000341398 CLASP1Q7Z460 1538 aa23.27■■□□□ 1.32
NECTIN1-203ENST00000341398 ABCA10Q8WWZ4 1543 aa23.27■■□□□ 1.32
NECTIN1-203ENST00000341398 TRHP20396 242 aaPredicted RBP23.27■■□□□ 1.31
NECTIN1-203ENST00000341398 WRNQ14191 1432 aaPredicted RBP eCLIP23.24■■□□□ 1.31
NECTIN1-203ENST00000341398 ABCA5Q8WWZ7 1642 aa23.2■■□□□ 1.3
NECTIN1-203ENST00000341398 TOP2BQ02880 1626 aa23.15■■□□□ 1.3
NECTIN1-203ENST00000341398 BIVM-ERCC5R4GMW8 1640 aa23.14■■□□□ 1.3
NECTIN1-203ENST00000341398 GRIN2AQ12879 1464 aa23.08■■□□□ 1.28
NECTIN1-203ENST00000341398 AEBP2Q6ZN18 517 aaPredicted RBP23.05■■□□□ 1.28
NECTIN1-203ENST00000341398 FHAD1B1AJZ9 1412 aa23.03■■□□□ 1.28
NECTIN1-203ENST00000341398 ADAMTS12P58397 1594 aa23.02■■□□□ 1.28
NECTIN1-203ENST00000341398 ERICH3Q5RHP9 1530 aa23.01■■□□□ 1.27
NECTIN1-203ENST00000341398 NUP160Q12769 1436 aa22.98■■□□□ 1.27
NECTIN1-203ENST00000341398 CEP170Q5SW79 1584 aa22.95■■□□□ 1.27
NECTIN1-203ENST00000341398 ERCC6L2Q5T890 1561 aa22.87■■□□□ 1.25
NECTIN1-203ENST00000341398 SHROOM2Q13796 1616 aa22.87■■□□□ 1.25
NECTIN1-203ENST00000341398 JPH4Q96JJ6 628 aa22.84■■□□□ 1.25
NECTIN1-203ENST00000341398 PRG4Q92954 1404 aaPredicted RBP22.8■■□□□ 1.24
NECTIN1-203ENST00000341398 KIF27Q86VH2 1401 aa22.75■■□□□ 1.23
Retrieved 100 of 20,778 RNA–protein pairs in 48.5 ms