Protein–RNA interactions for Protein: C9J1S8

TRIM49D1, Tripartite motif-containing protein 49D, humanhuman

Predictions only

Length 452 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM49D1C9J1S8 EGFR-206ENST00000454757 5464 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
TRIM49D1C9J1S8 PBXIP1-202ENST00000368463 3212 ntAPPRIS P3 TSL 1 (best) BASIC15.09■□□□□ 0.01
TRIM49D1C9J1S8 XPNPEP1-201ENST00000322238 2467 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
TRIM49D1C9J1S8 CORO7-201ENST00000251166 3540 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
TRIM49D1C9J1S8 DNER-201ENST00000341772 3260 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
TRIM49D1C9J1S8 CCDC32-201ENST00000358005 1704 ntAPPRIS P1 TSL 2 BASIC15.09■□□□□ 0.01
TRIM49D1C9J1S8 SPACA9-203ENST00000372136 2536 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
TRIM49D1C9J1S8 ATE1-201ENST00000224652 4930 ntAPPRIS P5 TSL 1 (best) BASIC15.09■□□□□ 0.01
TRIM49D1C9J1S8 KIF22-208ENST00000569382 2020 ntTSL 5 BASIC15.09■□□□□ 0.01
TRIM49D1C9J1S8 RNF166-210ENST00000568683 1768 ntTSL 3 BASIC15.09■□□□□ 0.01
TRIM49D1C9J1S8 UGT3A2-201ENST00000282507 2355 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
TRIM49D1C9J1S8 SRP19-201ENST00000282999 937 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
TRIM49D1C9J1S8 SUN1-204ENST00000403868 978 ntTSL 2 BASIC15.09■□□□□ 0.01
TRIM49D1C9J1S8 VAT1-202ENST00000420567 1069 ntTSL 2 BASIC15.09■□□□□ 0.01
TRIM49D1C9J1S8 LINC01067-201ENST00000432575 664 ntTSL 3 BASIC15.09■□□□□ 0.01
TRIM49D1C9J1S8 AC026202.2-201ENST00000439325 672 ntTSL 2 BASIC15.09■□□□□ 0.01
TRIM49D1C9J1S8 AC139149.1-202ENST00000442532 783 ntTSL 3 BASIC15.09■□□□□ 0.01
TRIM49D1C9J1S8 HLA-J-203ENST00000494367 1087 ntBASIC15.09■□□□□ 0.01
TRIM49D1C9J1S8 SWI5-205ENST00000495313 466 ntAPPRIS ALT2 TSL 3 BASIC15.09■□□□□ 0.01
TRIM49D1C9J1S8 IL32-211ENST00000525643 1272 ntAPPRIS P4 TSL 1 (best) BASIC15.09■□□□□ 0.01
TRIM49D1C9J1S8 IL32-213ENST00000528163 950 ntAPPRIS P4 TSL 2 BASIC15.09■□□□□ 0.01
TRIM49D1C9J1S8 AL139349.1-201ENST00000530479 577 ntTSL 4 BASIC15.09■□□□□ 0.01
TRIM49D1C9J1S8 RAB35-202ENST00000534951 939 ntTSL 2 BASIC15.09■□□□□ 0.01
TRIM49D1C9J1S8 AC007569.1-201ENST00000550306 600 ntTSL 3 BASIC15.09■□□□□ 0.01
TRIM49D1C9J1S8 IL32-231ENST00000551513 791 ntAPPRIS ALT2 TSL 3 BASIC15.09■□□□□ 0.01
TRIM49D1C9J1S8 AC090607.3-202ENST00000558971 383 ntTSL 3 BASIC15.09■□□□□ 0.01
TRIM49D1C9J1S8 AC092337.1-201ENST00000568699 1129 ntBASIC15.09■□□□□ 0.01
TRIM49D1C9J1S8 5S_rRNA.22-201ENST00000614916 106 ntBASIC15.09■□□□□ 0.01
TRIM49D1C9J1S8 AC243829.4-204ENST00000616926 1115 ntTSL 5 BASIC15.09■□□□□ 0.01
TRIM49D1C9J1S8 RAB34-223ENST00000636154 730 ntTSL 2 BASIC15.09■□□□□ 0.01
TRIM49D1C9J1S8 DSEL-201ENST00000310045 9531 ntAPPRIS P1 TSL 2 BASIC15.09■□□□□ 0.01
TRIM49D1C9J1S8 TBC1D1-214ENST00000508802 4119 ntTSL 2 BASIC15.09■□□□□ 0.01
TRIM49D1C9J1S8 MTMR6-201ENST00000381801 5659 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
TRIM49D1C9J1S8 RAD51C-215ENST00000583539 1319 ntAPPRIS ALT2 TSL 2 BASIC15.09■□□□□ 0.01
TRIM49D1C9J1S8 ABCB8-212ENST00000477719 1625 ntTSL 5 BASIC15.09■□□□□ 0.01
TRIM49D1C9J1S8 CTD-2194D22.4-201ENST00000514569 1635 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
TRIM49D1C9J1S8 BOLL-203ENST00000392296 2838 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
TRIM49D1C9J1S8 TARS2-203ENST00000369054 1998 ntTSL 2 BASIC15.09■□□□□ 0.01
TRIM49D1C9J1S8 WNT7B-201ENST00000339464 3919 ntAPPRIS P2 TSL 1 (best) BASIC15.09■□□□□ 0.01
TRIM49D1C9J1S8 FUK-202ENST00000378912 3925 ntTSL 2 BASIC15.09■□□□□ 0.01
TRIM49D1C9J1S8 RCAN2-203ENST00000371374 3327 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
TRIM49D1C9J1S8 CLASRP-204ENST00000544944 2769 ntAPPRIS ALT2 TSL 2 BASIC15.08■□□□□ 0.01
TRIM49D1C9J1S8 AMT-202ENST00000395338 1831 ntAPPRIS ALT1 TSL 1 (best) BASIC15.08■□□□□ 0.01
TRIM49D1C9J1S8 HDAC9-208ENST00000417496 2524 ntTSL 2 BASIC15.08■□□□□ 0.01
TRIM49D1C9J1S8 GOLGA8R-201ENST00000327271 1896 ntAPPRIS P1 TSL 5 BASIC15.08■□□□□ 0.01
TRIM49D1C9J1S8 ZMYM3-204ENST00000373982 1867 ntTSL 5 BASIC15.08■□□□□ 0.01
TRIM49D1C9J1S8 AC126335.2-201ENST00000623362 4637 ntBASIC15.08■□□□□ 0
TRIM49D1C9J1S8 ZNF576-201ENST00000336564 2566 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
TRIM49D1C9J1S8 DYRK1A-203ENST00000398956 1590 ntTSL 1 (best) BASIC15.08■□□□□ 0
TRIM49D1C9J1S8 SNX30-201ENST00000374232 7622 ntAPPRIS P1 TSL 5 BASIC15.08■□□□□ 0
TRIM49D1C9J1S8 FAM160A2-202ENST00000449352 3354 ntAPPRIS ALT1 TSL 1 (best) BASIC15.08■□□□□ 0
TRIM49D1C9J1S8 SLC41A3-204ENST00000383598 2330 ntAPPRIS P3 TSL 2 BASIC15.08■□□□□ 0
TRIM49D1C9J1S8 RGMA-202ENST00000425933 3078 ntAPPRIS ALT2 TSL 5 BASIC15.08■□□□□ 0
TRIM49D1C9J1S8 LGALS1-201ENST00000215909 560 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
TRIM49D1C9J1S8 MRPL58-201ENST00000301585 890 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
TRIM49D1C9J1S8 FCRLB-204ENST00000367946 1152 ntTSL 1 (best) BASIC15.08■□□□□ 0
TRIM49D1C9J1S8 BEX2-202ENST00000372677 899 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
TRIM49D1C9J1S8 AGER-204ENST00000375067 1250 ntTSL 1 (best) BASIC15.08■□□□□ 0
TRIM49D1C9J1S8 KRTAP10-2-201ENST00000391621 1149 ntAPPRIS P1 BASIC15.08■□□□□ 0
TRIM49D1C9J1S8 AL353779.1-201ENST00000434793 351 ntBASIC15.08■□□□□ 0
TRIM49D1C9J1S8 AP000347.1-202ENST00000435868 847 ntBASIC15.08■□□□□ 0
TRIM49D1C9J1S8 KCNQ1DN-201ENST00000441418 1093 ntTSL 1 (best) BASIC15.08■□□□□ 0
TRIM49D1C9J1S8 CNN2P2-201ENST00000443536 909 ntBASIC15.08■□□□□ 0
TRIM49D1C9J1S8 CNN2P3-201ENST00000450201 906 ntBASIC15.08■□□□□ 0
TRIM49D1C9J1S8 AC125807.1-201ENST00000483097 614 ntBASIC15.08■□□□□ 0
TRIM49D1C9J1S8 SLBP-205ENST00000488267 987 ntTSL 2 BASIC15.08■□□□□ 0
TRIM49D1C9J1S8 LY6E-204ENST00000519546 971 ntTSL 2 BASIC15.08■□□□□ 0
TRIM49D1C9J1S8 AC069120.2-201ENST00000524091 540 ntBASIC15.08■□□□□ 0
TRIM49D1C9J1S8 ZNF890P-202ENST00000530367 1156 ntBASIC15.08■□□□□ 0
TRIM49D1C9J1S8 AC069503.2-201ENST00000546333 576 ntAPPRIS P1 TSL 5 BASIC15.08■□□□□ 0
TRIM49D1C9J1S8 MPI-209ENST00000564003 1195 ntTSL 2 BASIC15.08■□□□□ 0
TRIM49D1C9J1S8 AL031717.1-201ENST00000569670 565 ntTSL 4 BASIC15.08■□□□□ 0
TRIM49D1C9J1S8 UPK1A-204ENST00000617999 1268 ntAPPRIS P1 TSL 5 BASIC15.08■□□□□ 0
TRIM49D1C9J1S8 AL136317.3-201ENST00000618497 906 ntBASIC15.08■□□□□ 0
TRIM49D1C9J1S8 LRRFIP1-203ENST00000308482 2775 ntAPPRIS ALT2 TSL 1 (best) BASIC15.08■□□□□ 0
TRIM49D1C9J1S8 CRMP1-205ENST00000512574 2764 ntTSL 2 BASIC15.08■□□□□ 0
TRIM49D1C9J1S8 GPR83-201ENST00000243673 4282 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
TRIM49D1C9J1S8 ASB10-204ENST00000420175 1694 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
TRIM49D1C9J1S8 TMEM258-207ENST00000543510 1692 ntTSL 2 BASIC15.08■□□□□ 0
TRIM49D1C9J1S8 INHBE-201ENST00000266646 2429 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
TRIM49D1C9J1S8 TRAFD1-201ENST00000257604 3178 ntAPPRIS P2 TSL 2 BASIC15.08■□□□□ 0
TRIM49D1C9J1S8 ZDHHC19-201ENST00000296326 1306 ntAPPRIS P1 TSL 5 BASIC15.08■□□□□ 0
TRIM49D1C9J1S8 GPAT4-201ENST00000396987 6298 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
TRIM49D1C9J1S8 MBD1-201ENST00000269468 3259 ntAPPRIS P3 TSL 5 BASIC15.08■□□□□ 0
TRIM49D1C9J1S8 CCNJ-201ENST00000265992 4115 ntTSL 1 (best) BASIC15.08■□□□□ 0
TRIM49D1C9J1S8 AC105339.1-201ENST00000440089 1362 ntTSL 1 (best) BASIC15.08■□□□□ 0
TRIM49D1C9J1S8 SLC1A5-201ENST00000412532 1750 ntTSL 2 BASIC15.08■□□□□ 0
TRIM49D1C9J1S8 TGM6-202ENST00000381423 2158 ntTSL 1 (best) BASIC15.08■□□□□ 0
TRIM49D1C9J1S8 TMEM143-201ENST00000293261 2560 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
TRIM49D1C9J1S8 TFDP1-201ENST00000375370 2648 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
TRIM49D1C9J1S8 SMYD1-203ENST00000444564 1816 ntTSL 5 BASIC15.08■□□□□ 0
TRIM49D1C9J1S8 GAL3ST4-202ENST00000411994 1404 ntTSL 2 BASIC15.08■□□□□ 0
TRIM49D1C9J1S8 KRT8P14-201ENST00000414254 1442 ntBASIC15.08■□□□□ 0
TRIM49D1C9J1S8 SLC26A8-201ENST00000355574 3463 ntAPPRIS P1 TSL 2 BASIC15.08■□□□□ 0
TRIM49D1C9J1S8 PELP1-212ENST00000574876 3465 ntAPPRIS ALT2 TSL 1 (best) BASIC15.08■□□□□ 0
TRIM49D1C9J1S8 AC025171.1-202ENST00000499871 2271 ntTSL 1 (best) BASIC15.08■□□□□ 0
TRIM49D1C9J1S8 CLK3P2-201ENST00000427566 1453 ntBASIC15.08■□□□□ 0
TRIM49D1C9J1S8 SH3KBP1-201ENST00000379697 1944 ntTSL 5 BASIC15.07■□□□□ 0
TRIM49D1C9J1S8 RNF150-201ENST00000306799 4535 ntTSL 1 (best) BASIC15.07■□□□□ 0
TRIM49D1C9J1S8 TMEM40-204ENST00000435218 1547 ntAPPRIS ALT2 TSL 1 (best) BASIC15.07■□□□□ 0
Retrieved 100 of 98,524 protein–RNA pairs in 71 ms