Protein–RNA interactions for Protein: O95477

ABCA1, ATP-binding cassette sub-family A member 1, humanhuman

Predictions only

Length 2,261 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA1O95477 UPK3B-202ENST00000334348 2373 ntAPPRIS ALT2 TSL 2 BASIC12.67□□□□□ -0.38
ABCA1O95477 SYCE2-201ENST00000293695 1231 ntAPPRIS P2 TSL 1 (best) BASIC12.67□□□□□ -0.38
ABCA1O95477 BORCS5-201ENST00000298571 549 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
ABCA1O95477 ZNRD1-201ENST00000332435 864 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
ABCA1O95477 YIPF7-201ENST00000332990 937 ntTSL 5 BASIC12.67□□□□□ -0.38
ABCA1O95477 KRTAP21-2-201ENST00000333892 440 ntAPPRIS P1 BASIC12.67□□□□□ -0.38
ABCA1O95477 HIST3H2A-201ENST00000366695 895 ntAPPRIS P1 BASIC12.67□□□□□ -0.38
ABCA1O95477 SMS-201ENST00000379404 1174 ntTSL 3 BASIC12.67□□□□□ -0.38
ABCA1O95477 CSH2-203ENST00000392886 920 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
ABCA1O95477 NDUFC1-201ENST00000394223 598 ntAPPRIS P1 TSL 3 BASIC12.67□□□□□ -0.38
ABCA1O95477 MCFD2-204ENST00000409207 1113 ntAPPRIS P1 TSL 2 BASIC12.67□□□□□ -0.38
ABCA1O95477 LINC01006-204ENST00000435354 545 ntTSL 2 BASIC12.67□□□□□ -0.38
ABCA1O95477 EEF1DP6-201ENST00000449232 372 ntBASIC12.67□□□□□ -0.38
ABCA1O95477 COX5BP1-201ENST00000507622 393 ntBASIC12.67□□□□□ -0.38
ABCA1O95477 MRPL48-210ENST00000542303 661 ntTSL 3 BASIC12.67□□□□□ -0.38
ABCA1O95477 C17orf49-209ENST00000552775 779 ntTSL 5 BASIC12.67□□□□□ -0.38
ABCA1O95477 TCL1A-208ENST00000556450 872 ntAPPRIS P1 TSL 3 BASIC12.67□□□□□ -0.38
ABCA1O95477 CSH2-206ENST00000560142 749 ntTSL 5 BASIC12.67□□□□□ -0.38
ABCA1O95477 AC105105.3-201ENST00000585470 646 ntTSL 5 BASIC12.67□□□□□ -0.38
ABCA1O95477 C20orf141-202ENST00000603872 580 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
ABCA1O95477 AC073413.1-201ENST00000603927 732 ntBASIC12.67□□□□□ -0.38
ABCA1O95477 EDDM13-208ENST00000637802 854 ntAPPRIS P1 TSL 5 BASIC12.67□□□□□ -0.38
ABCA1O95477 AC022188.1-201ENST00000620960 1664 ntBASIC12.67□□□□□ -0.38
ABCA1O95477 RREB1-202ENST00000349384 7440 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
ABCA1O95477 PODN-202ENST00000371500 3287 ntAPPRIS ALT2 TSL 1 (best) BASIC12.67□□□□□ -0.38
ABCA1O95477 MTMR3-204ENST00000401950 6018 ntAPPRIS P3 TSL 1 (best) BASIC12.67□□□□□ -0.38
ABCA1O95477 GLG1-203ENST00000447066 3626 ntAPPRIS ALT2 TSL 2 BASIC12.67□□□□□ -0.38
ABCA1O95477 AKAP9-205ENST00000394564 1356 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
ABCA1O95477 PPP6R1-203ENST00000587283 2953 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
ABCA1O95477 LINC01118-203ENST00000479311 1588 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
ABCA1O95477 TPD52L2-205ENST00000352482 2339 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
ABCA1O95477 TPD52L2-210ENST00000615907 2310 ntTSL 4 BASIC12.66□□□□□ -0.38
ABCA1O95477 MBD1-205ENST00000353909 2820 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
ABCA1O95477 OSBPL1A-201ENST00000319481 4195 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
ABCA1O95477 USP28-214ENST00000545540 3431 ntTSL 2 BASIC12.66□□□□□ -0.38
ABCA1O95477 MUTYH-211ENST00000456914 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC12.66□□□□□ -0.38
ABCA1O95477 ZBED1-203ENST00000381223 4510 ntAPPRIS P1 TSL 2 BASIC12.66□□□□□ -0.38
ABCA1O95477 FAM153A-220ENST00000513554 1437 ntAPPRIS ALT2 TSL 5 BASIC12.66□□□□□ -0.38
ABCA1O95477 CCNA2-202ENST00000618014 2797 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
ABCA1O95477 SIK3-201ENST00000375300 6213 ntAPPRIS P3 TSL 2 BASIC12.66□□□□□ -0.38
ABCA1O95477 FOLH1-201ENST00000256999 2635 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
ABCA1O95477 MIOS-201ENST00000340080 3453 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
ABCA1O95477 JAK3-201ENST00000458235 5432 ntAPPRIS P2 TSL 5 BASIC12.66□□□□□ -0.38
ABCA1O95477 KRTAP19-7-201ENST00000334849 440 ntAPPRIS P1 BASIC12.66□□□□□ -0.38
ABCA1O95477 C1orf43-205ENST00000368519 1163 ntTSL 2 BASIC12.66□□□□□ -0.38
ABCA1O95477 FAM27C-201ENST00000377542 616 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
ABCA1O95477 POM121L8P-201ENST00000417732 1281 ntBASIC12.66□□□□□ -0.38
ABCA1O95477 LINC02158-201ENST00000432377 897 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
ABCA1O95477 POM121L9P-203ENST00000441984 1285 ntBASIC12.66□□□□□ -0.38
ABCA1O95477 HIST2H2BB-201ENST00000449108 381 ntBASIC12.66□□□□□ -0.38
ABCA1O95477 AP003419.2-201ENST00000543494 711 ntAPPRIS P1 TSL 3 BASIC12.66□□□□□ -0.38
ABCA1O95477 AC013355.1-201ENST00000562625 723 ntBASIC12.66□□□□□ -0.38
ABCA1O95477 PRSS30P-206ENST00000641773 873 ntBASIC12.66□□□□□ -0.38
ABCA1O95477 SMPDL3A-201ENST00000368440 1851 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
ABCA1O95477 GABPA-202ENST00000400075 4814 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
ABCA1O95477 CHRD-206ENST00000450923 3384 ntAPPRIS ALT2 TSL 1 (best) BASIC12.66□□□□□ -0.38
ABCA1O95477 AC019205.2-202ENST00000441363 2403 ntTSL 5 BASIC12.66□□□□□ -0.38
ABCA1O95477 TMEM92-201ENST00000300433 2767 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
ABCA1O95477 OGFOD3-201ENST00000313056 4287 ntAPPRIS P1 TSL 2 BASIC12.66□□□□□ -0.38
ABCA1O95477 MPL-201ENST00000372470 1908 ntAPPRIS P2 TSL 1 (best) BASIC12.66□□□□□ -0.38
ABCA1O95477 TNFRSF1B-201ENST00000376259 3683 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
ABCA1O95477 AP005117.1-202ENST00000581724 1908 ntBASIC12.66□□□□□ -0.38
ABCA1O95477 MAPK7-203ENST00000395602 3059 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
ABCA1O95477 LZTS1-201ENST00000265801 5459 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
ABCA1O95477 TSG101-204ENST00000536719 2101 ntTSL 5 BASIC12.66□□□□□ -0.38
ABCA1O95477 SREBF1-202ENST00000355815 4253 ntAPPRIS ALT2 TSL 1 (best) BASIC12.66□□□□□ -0.38
ABCA1O95477 FAM46A-201ENST00000320172 5609 ntAPPRIS P2 TSL 1 (best) BASIC12.66□□□□□ -0.38
ABCA1O95477 UBAC2-202ENST00000376440 2525 ntTSL 2 BASIC12.66□□□□□ -0.38
ABCA1O95477 PPHLN1-204ENST00000358314 1643 ntTSL 2 BASIC12.66□□□□□ -0.38
ABCA1O95477 WDR20-202ENST00000322340 3060 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
ABCA1O95477 OCLN-202ENST00000396442 1748 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
ABCA1O95477 MUTYH-209ENST00000448481 1706 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
ABCA1O95477 NSUN5-203ENST00000428206 2269 ntAPPRIS ALT2 TSL 2 BASIC12.65□□□□□ -0.38
ABCA1O95477 RAB36-202ENST00000341989 936 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
ABCA1O95477 UFM1-202ENST00000379649 846 ntTSL 4 BASIC12.65□□□□□ -0.38
ABCA1O95477 MIR33B-201ENST00000385104 96 ntBASIC12.65□□□□□ -0.38
ABCA1O95477 IGHV3-53-201ENST00000390627 571 ntAPPRIS P1 BASIC12.65□□□□□ -0.38
ABCA1O95477 ACTBP8-201ENST00000403258 1108 ntBASIC12.65□□□□□ -0.38
ABCA1O95477 RPL17P11-201ENST00000417593 544 ntBASIC12.65□□□□□ -0.38
ABCA1O95477 AC016825.1-201ENST00000433600 778 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
ABCA1O95477 TMEM91-211ENST00000544232 725 ntTSL 3 BASIC12.65□□□□□ -0.38
ABCA1O95477 AC092634.5-202ENST00000587736 928 ntTSL 2 BASIC12.65□□□□□ -0.38
ABCA1O95477 AP001505.2-201ENST00000616815 443 ntBASIC12.65□□□□□ -0.38
ABCA1O95477 POLR3D-202ENST00000397802 5494 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
ABCA1O95477 TSSK2-201ENST00000399635 1816 ntAPPRIS P1 BASIC12.65□□□□□ -0.38
ABCA1O95477 AL355493.2-201ENST00000568270 1395 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
ABCA1O95477 PPP1R21-201ENST00000281394 3137 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
ABCA1O95477 KCNK3-201ENST00000302909 6162 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
ABCA1O95477 NLRX1-204ENST00000409991 3716 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
ABCA1O95477 SLC30A1-201ENST00000367001 5474 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
ABCA1O95477 LUC7L3-202ENST00000393227 2284 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
ABCA1O95477 LINC01529-205ENST00000637365 2000 ntTSL 5 BASIC12.65□□□□□ -0.38
ABCA1O95477 RCL1-204ENST00000381750 2134 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
ABCA1O95477 AC139749.1-202ENST00000617529 3139 ntBASIC12.65□□□□□ -0.38
ABCA1O95477 CPEB3-203ENST00000614585 5789 ntAPPRIS P3 TSL 5 BASIC12.65□□□□□ -0.38
ABCA1O95477 CMA1-202ENST00000250378 937 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
ABCA1O95477 RPP40-201ENST00000319533 1088 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
ABCA1O95477 AL136309.1-201ENST00000403917 691 ntBASIC12.65□□□□□ -0.38
ABCA1O95477 CDRT15-201ENST00000420162 766 ntAPPRIS P2 TSL 1 (best) BASIC12.65□□□□□ -0.38
ABCA1O95477 CDRT15-202ENST00000431716 655 ntAPPRIS ALT2 TSL 1 (best) BASIC12.65□□□□□ -0.38
Retrieved 100 of 98,524 protein–RNA pairs in 36.6 ms