Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 WDR27-201ENST00000423258 2465 ntAPPRIS ALT2 TSL 1 (best) BASIC14.58□□□□□ -0.08
FOXA1P55317 BOLL-203ENST00000392296 2838 ntAPPRIS ALT2 TSL 1 (best) BASIC14.58□□□□□ -0.08
FOXA1P55317 ZKSCAN7-201ENST00000273320 3477 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
FOXA1P55317 SEC13-201ENST00000337354 1363 ntAPPRIS ALT1 TSL 1 (best) BASIC14.58□□□□□ -0.08
FOXA1P55317 SLC38A9-202ENST00000396865 2927 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
FOXA1P55317 DRC3-203ENST00000399187 2008 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
FOXA1P55317 KIAA1211L-201ENST00000397899 3907 ntAPPRIS P2 TSL 1 (best) BASIC14.58□□□□□ -0.08
FOXA1P55317 GATB-201ENST00000263985 2385 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
FOXA1P55317 TTC8-203ENST00000346301 2058 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
FOXA1P55317 CDH1-213ENST00000612417 2068 ntTSL 5 BASIC14.57□□□□□ -0.08
FOXA1P55317 SUMO3-203ENST00000397898 1779 ntTSL 3 BASIC14.57□□□□□ -0.08
FOXA1P55317 GGACT-201ENST00000376250 2804 ntAPPRIS P1 TSL 3 BASIC14.57□□□□□ -0.08
FOXA1P55317 FADS1-201ENST00000350997 4525 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
FOXA1P55317 PRKN-204ENST00000366896 2514 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
FOXA1P55317 CD300C-201ENST00000330793 1517 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
FOXA1P55317 SIPA1-203ENST00000527525 3235 ntTSL 2 BASIC14.57□□□□□ -0.08
FOXA1P55317 DMTN-201ENST00000265800 2554 ntTSL 5 BASIC14.57□□□□□ -0.08
FOXA1P55317 DMTN-207ENST00000517305 2551 ntTSL 5 BASIC14.57□□□□□ -0.08
FOXA1P55317 BRAT1-201ENST00000340611 2915 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
FOXA1P55317 OBSL1-202ENST00000373873 3297 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
FOXA1P55317 SC5D-202ENST00000392789 2258 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
FOXA1P55317 ILF2-205ENST00000615950 1906 ntTSL 2 BASIC14.57□□□□□ -0.08
FOXA1P55317 BCL9L-202ENST00000526143 5514 ntTSL 5 BASIC14.57□□□□□ -0.08
FOXA1P55317 KCTD7-206ENST00000639828 5951 ntAPPRIS P3 TSL 2 BASIC14.57□□□□□ -0.08
FOXA1P55317 RNU1-114P-201ENST00000365297 166 ntBASIC14.57□□□□□ -0.08
FOXA1P55317 C1orf43-203ENST00000368516 872 ntTSL 2 BASIC14.57□□□□□ -0.08
FOXA1P55317 AL139094.1-201ENST00000405549 1188 ntBASIC14.57□□□□□ -0.08
FOXA1P55317 DERL3-204ENST00000406855 1063 ntAPPRIS ALT2 TSL 1 (best) BASIC14.57□□□□□ -0.08
FOXA1P55317 LINC00659-201ENST00000412500 540 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
FOXA1P55317 CGB8-201ENST00000448456 882 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
FOXA1P55317 AL033519.3-201ENST00000450618 595 ntTSL 5 BASIC14.57□□□□□ -0.08
FOXA1P55317 ZIC4-214ENST00000491672 925 ntTSL 4 BASIC14.57□□□□□ -0.08
FOXA1P55317 AC026434.2-201ENST00000506094 1078 ntBASIC14.57□□□□□ -0.08
FOXA1P55317 AC009902.2-201ENST00000518880 620 ntTSL 4 BASIC14.57□□□□□ -0.08
FOXA1P55317 PIMREG-202ENST00000570337 891 ntTSL 5 BASIC14.57□□□□□ -0.08
FOXA1P55317 PIMREG-203ENST00000571373 1002 ntTSL 3 BASIC14.57□□□□□ -0.08
FOXA1P55317 AC005498.2-205ENST00000593218 784 ntBASIC14.57□□□□□ -0.08
FOXA1P55317 BX539320.1-201ENST00000623759 877 ntBASIC14.57□□□□□ -0.08
FOXA1P55317 WDR45-230ENST00000634559 1192 ntTSL 5 BASIC14.57□□□□□ -0.08
FOXA1P55317 INTS4P2-202ENST00000614726 2019 ntBASIC14.57□□□□□ -0.08
FOXA1P55317 INPP5B-202ENST00000373023 4694 ntAPPRIS ALT2 TSL 5 BASIC14.57□□□□□ -0.08
FOXA1P55317 AVL9-201ENST00000318709 6982 ntAPPRIS P1 TSL 2 BASIC14.57□□□□□ -0.08
FOXA1P55317 STX1A-201ENST00000222812 2095 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
FOXA1P55317 STX1A-204ENST00000395156 2050 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
FOXA1P55317 NOX5-203ENST00000448182 2498 ntAPPRIS ALT2 TSL 1 (best) BASIC14.57□□□□□ -0.08
FOXA1P55317 UBAP1L-201ENST00000502113 1381 ntAPPRIS P1 TSL 5 BASIC14.57□□□□□ -0.08
FOXA1P55317 TMEM143-201ENST00000293261 2560 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
FOXA1P55317 NIPA1-201ENST00000337435 6567 ntAPPRIS P4 TSL 1 (best) BASIC14.57□□□□□ -0.08
FOXA1P55317 KIF21A-202ENST00000361961 6601 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
FOXA1P55317 KCNC1-201ENST00000265969 4295 ntAPPRIS P1 TSL 5 BASIC14.57□□□□□ -0.08
FOXA1P55317 UPB1-201ENST00000326010 2290 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
FOXA1P55317 CEP170B-203ENST00000453495 6813 ntAPPRIS ALT2 TSL 5 BASIC14.57□□□□□ -0.08
FOXA1P55317 KLHDC3-203ENST00000332245 1494 ntTSL 2 BASIC14.57□□□□□ -0.08
FOXA1P55317 HIST1H2AC-203ENST00000602637 1462 ntAPPRIS P1 TSL 2 BASIC14.57□□□□□ -0.08
FOXA1P55317 SLC25A21-AS1-201ENST00000556667 1924 ntBASIC14.56□□□□□ -0.08
FOXA1P55317 ADI1-201ENST00000327435 2391 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
FOXA1P55317 NLRX1-204ENST00000409991 3716 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
FOXA1P55317 BNIP3-201ENST00000368636 2861 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
FOXA1P55317 ALDOA-209ENST00000563060 1550 ntAPPRIS P2 TSL 1 (best) BASIC14.56□□□□□ -0.08
FOXA1P55317 MVK-214ENST00000629016 1591 ntTSL 5 BASIC14.56□□□□□ -0.08
FOXA1P55317 GNE-202ENST00000396594 5298 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
FOXA1P55317 LENG8-208ENST00000610347 5789 ntAPPRIS ALT2 TSL 5 BASIC14.56□□□□□ -0.08
FOXA1P55317 RAD17-207ENST00000361732 3002 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
FOXA1P55317 ATP6V0A1-203ENST00000393829 3028 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
FOXA1P55317 CCDC140-201ENST00000295226 1699 ntAPPRIS P2 TSL 1 (best) BASIC14.56□□□□□ -0.08
FOXA1P55317 EIF4G1-216ENST00000427845 5038 ntTSL 5 BASIC14.56□□□□□ -0.08
FOXA1P55317 CSTB-201ENST00000291568 2164 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
FOXA1P55317 TRAFD1-201ENST00000257604 3178 ntAPPRIS P2 TSL 2 BASIC14.56□□□□□ -0.08
FOXA1P55317 LINC01138-206ENST00000622328 2212 ntTSL 2 BASIC14.56□□□□□ -0.08
FOXA1P55317 MARK4-202ENST00000300843 5209 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
FOXA1P55317 TSPAN12-201ENST00000222747 2798 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
FOXA1P55317 APBB1IP-202ENST00000376236 2771 ntAPPRIS P1 TSL 5 BASIC14.56□□□□□ -0.08
FOXA1P55317 AAMP-202ENST00000420660 1761 ntTSL 2 BASIC14.56□□□□□ -0.08
FOXA1P55317 TBP-207ENST00000616883 1750 ntAPPRIS ALT2 TSL 5 BASIC14.56□□□□□ -0.08
FOXA1P55317 POLR3GL-202ENST00000369314 1165 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
FOXA1P55317 DBNDD2-208ENST00000372723 1118 ntAPPRIS P1 TSL 2 BASIC14.56□□□□□ -0.08
FOXA1P55317 BRF1-202ENST00000379932 884 ntTSL 5 BASIC14.56□□□□□ -0.08
FOXA1P55317 AL512638.1-201ENST00000457493 794 ntBASIC14.56□□□□□ -0.08
FOXA1P55317 HDAC2-AS2-213ENST00000520891 603 ntTSL 4 BASIC14.56□□□□□ -0.08
FOXA1P55317 AP001360.1-202ENST00000526934 479 ntTSL 3 BASIC14.56□□□□□ -0.08
FOXA1P55317 AC138304.1-201ENST00000563841 424 ntTSL 3 BASIC14.56□□□□□ -0.08
FOXA1P55317 AC120045.2-201ENST00000567334 178 ntBASIC14.56□□□□□ -0.08
FOXA1P55317 MIF4GD-206ENST00000579119 856 ntTSL 3 BASIC14.56□□□□□ -0.08
FOXA1P55317 AKR1A1-202ENST00000372070 1818 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
FOXA1P55317 AMT-202ENST00000395338 1831 ntAPPRIS ALT1 TSL 1 (best) BASIC14.56□□□□□ -0.08
FOXA1P55317 TFR2-201ENST00000223051 2888 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
FOXA1P55317 ASPH-214ENST00000519234 2874 ntTSL 5 BASIC14.56□□□□□ -0.08
FOXA1P55317 BAG4-201ENST00000287322 4453 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
FOXA1P55317 GRAPL-201ENST00000344415 1308 ntAPPRIS P2 TSL 1 (best) BASIC14.56□□□□□ -0.08
FOXA1P55317 ZMIZ2-202ENST00000309315 5144 ntAPPRIS P4 TSL 2 BASIC14.56□□□□□ -0.08
FOXA1P55317 AC008894.2-201ENST00000597983 2987 ntTSL 2 BASIC14.56□□□□□ -0.08
FOXA1P55317 ARHGEF1-202ENST00000347545 3091 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
FOXA1P55317 NRDC-201ENST00000352171 3691 ntAPPRIS ALT2 TSL 1 (best) BASIC14.56□□□□□ -0.08
FOXA1P55317 REPS1-221ENST00000626459 3665 ntTSL 5 BASIC14.56□□□□□ -0.08
FOXA1P55317 AC109583.3-201ENST00000641183 3128 ntAPPRIS P1 BASIC14.56□□□□□ -0.08
FOXA1P55317 TUBA8-202ENST00000330423 2018 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
FOXA1P55317 USP4-203ENST00000415188 1454 ntTSL 3 BASIC14.56□□□□□ -0.08
FOXA1P55317 AC007603.1-201ENST00000563124 2085 ntTSL 2 BASIC14.56□□□□□ -0.08
FOXA1P55317 UHRF1-204ENST00000616255 2661 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
FOXA1P55317 TDRD12-202ENST00000444215 3934 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Retrieved 100 of 98,524 protein–RNA pairs in 40.1 ms