Protein–RNA interactions for Protein: P55289

CDH12, Cadherin-12, humanhuman

Predictions only

Length 794 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH12P55289 NYNRIN-201ENST00000382554 7857 ntAPPRIS P1 TSL 5 BASIC14.1□□□□□ -0.15
CDH12P55289 SMTN-202ENST00000347557 3130 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
CDH12P55289 MBD1-207ENST00000398488 1512 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
CDH12P55289 ZMYND15-201ENST00000269289 2448 ntTSL 5 BASIC14.1□□□□□ -0.15
CDH12P55289 ZC3HAV1-203ENST00000464606 4776 ntAPPRIS ALT2 TSL 5 BASIC14.1□□□□□ -0.15
CDH12P55289 TMEM38A-201ENST00000187762 2649 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
CDH12P55289 DDN-201ENST00000421952 3749 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
CDH12P55289 HGNC:18790-203ENST00000433139 2254 ntAPPRIS P1 TSL 2 BASIC14.1□□□□□ -0.15
CDH12P55289 BRAP-201ENST00000327551 1947 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
CDH12P55289 TRAF1-201ENST00000373887 6324 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
CDH12P55289 SMAD2-202ENST00000356825 10445 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
CDH12P55289 ACSL1-201ENST00000281455 3832 ntAPPRIS P3 TSL 1 (best) BASIC14.09□□□□□ -0.15
CDH12P55289 HNRNPUL1-205ENST00000593587 2725 ntTSL 2 BASIC14.09□□□□□ -0.15
CDH12P55289 WASHC2A-203ENST00000351071 4642 ntAPPRIS ALT2 TSL 1 (best) BASIC14.09□□□□□ -0.15
CDH12P55289 NDFIP2-205ENST00000612570 4648 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
CDH12P55289 PNPLA5-204ENST00000593866 2197 ntTSL 2 BASIC14.09□□□□□ -0.15
CDH12P55289 ZDHHC3-201ENST00000296127 3101 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
CDH12P55289 TLN1-201ENST00000314888 8823 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
CDH12P55289 OXA1L-203ENST00000412791 1440 ntTSL 5 BASIC14.09□□□□□ -0.15
CDH12P55289 LMF1-AS1-202ENST00000569574 1408 ntTSL 3 BASIC14.09□□□□□ -0.15
CDH12P55289 PLA2G16-201ENST00000323646 2594 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
CDH12P55289 TGFB1I1-202ENST00000394858 1803 ntAPPRIS P3 TSL 1 (best) BASIC14.09□□□□□ -0.15
CDH12P55289 TFF2-201ENST00000291526 737 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
CDH12P55289 LINC00313-201ENST00000332440 579 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
CDH12P55289 FCRLB-204ENST00000367946 1152 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
CDH12P55289 BLOC1S2-202ENST00000370372 1249 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
CDH12P55289 AP001058.1-201ENST00000423967 463 ntTSL 2 BASIC14.09□□□□□ -0.15
CDH12P55289 LINC01534-201ENST00000425254 815 ntTSL 2 BASIC14.09□□□□□ -0.15
CDH12P55289 APOA1-AS-201ENST00000444200 563 ntTSL 4 BASIC14.09□□□□□ -0.15
CDH12P55289 IQCF3-204ENST00000446775 1241 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
CDH12P55289 AL356441.1-201ENST00000452618 492 ntTSL 3 BASIC14.09□□□□□ -0.15
CDH12P55289 AL359815.1-201ENST00000457706 821 ntTSL 2 BASIC14.09□□□□□ -0.15
CDH12P55289 NSUN5P1-208ENST00000473960 500 ntTSL 3 BASIC14.09□□□□□ -0.15
CDH12P55289 RPL28-205ENST00000558131 444 ntTSL 5 BASIC14.09□□□□□ -0.15
CDH12P55289 AC108449.3-201ENST00000560714 585 ntTSL 3 BASIC14.09□□□□□ -0.15
CDH12P55289 AC104985.1-201ENST00000587528 507 ntTSL 3 BASIC14.09□□□□□ -0.15
CDH12P55289 FSTL3-202ENST00000588773 746 ntTSL 2 BASIC14.09□□□□□ -0.15
CDH12P55289 MZF1-202ENST00000594108 1110 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
CDH12P55289 EBAG9-209ENST00000614147 1179 ntTSL 5 BASIC14.09□□□□□ -0.15
CDH12P55289 PCDHGC3-204ENST00000617222 731 ntTSL 3 BASIC14.09□□□□□ -0.15
CDH12P55289 NFYC-205ENST00000372654 1455 ntAPPRIS P3 TSL 1 (best) BASIC14.09□□□□□ -0.15
CDH12P55289 PPARGC1B-203ENST00000394320 4803 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
CDH12P55289 RHNO1-202ENST00000461997 1655 ntAPPRIS ALT2 TSL 2 BASIC14.09□□□□□ -0.15
CDH12P55289 INTS11-204ENST00000421495 1868 ntTSL 2 BASIC14.09□□□□□ -0.15
CDH12P55289 FAM107A-206ENST00000474531 2271 ntTSL 2 BASIC14.09□□□□□ -0.15
CDH12P55289 CAMK2D-204ENST00000394522 2696 ntAPPRIS ALT1 TSL 1 (best) BASIC14.09□□□□□ -0.15
CDH12P55289 GAD2-203ENST00000376261 5858 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
CDH12P55289 RNASE1-202ENST00000397967 1348 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
CDH12P55289 SYNRG-225ENST00000619541 3787 ntAPPRIS ALT2 TSL 1 (best) BASIC14.09□□□□□ -0.15
CDH12P55289 APBB1IP-202ENST00000376236 2771 ntAPPRIS P1 TSL 5 BASIC14.09□□□□□ -0.15
CDH12P55289 LRRC17-202ENST00000339431 1963 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
CDH12P55289 PLAGL1-201ENST00000354765 3663 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
CDH12P55289 PYGM-202ENST00000377432 2611 ntTSL 2 BASIC14.09□□□□□ -0.15
CDH12P55289 ERLIN2-205ENST00000518586 2623 ntTSL 2 BASIC14.09□□□□□ -0.15
CDH12P55289 NOX4-207ENST00000525196 1555 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
CDH12P55289 CTSD-211ENST00000637387 1597 ntAPPRIS ALT2 TSL 5 BASIC14.09□□□□□ -0.15
CDH12P55289 IL20RA-201ENST00000316649 3485 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
CDH12P55289 OPN4-202ENST00000372071 2401 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
CDH12P55289 TMPRSS3-204ENST00000433957 2403 ntAPPRIS ALT1 TSL 1 (best) BASIC14.09□□□□□ -0.15
CDH12P55289 OBSL1-202ENST00000373873 3297 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
CDH12P55289 CTSB-219ENST00000530640 1389 ntAPPRIS P1 TSL 5 BASIC14.09□□□□□ -0.15
CDH12P55289 PIGT-202ENST00000279036 2245 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
CDH12P55289 TJP3-207ENST00000589378 3068 ntAPPRIS ALT2 TSL 2 BASIC14.09□□□□□ -0.15
CDH12P55289 PRNP-201ENST00000379440 2657 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.15
CDH12P55289 AC092135.3-201ENST00000624151 1846 ntBASIC14.08□□□□□ -0.15
CDH12P55289 SLC39A9-209ENST00000556605 2065 ntTSL 1 (best) BASIC14.08□□□□□ -0.15
CDH12P55289 COPS7B-224ENST00000620578 2500 ntTSL 2 BASIC14.08□□□□□ -0.15
CDH12P55289 YTHDF3-205ENST00000539294 5163 ntAPPRIS P2 TSL 1 (best) BASIC14.08□□□□□ -0.16
CDH12P55289 BEND3P1-201ENST00000421591 1944 ntBASIC14.08□□□□□ -0.16
CDH12P55289 ILF2-205ENST00000615950 1906 ntTSL 2 BASIC14.08□□□□□ -0.16
CDH12P55289 GTPBP1-201ENST00000216044 5126 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
CDH12P55289 PSMB6-201ENST00000270586 852 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
CDH12P55289 JTB-201ENST00000271843 1287 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
CDH12P55289 C16orf92-201ENST00000300575 895 ntAPPRIS P2 TSL 1 (best) BASIC14.08□□□□□ -0.16
CDH12P55289 MRPL55-202ENST00000336300 722 ntAPPRIS P1 TSL 2 BASIC14.08□□□□□ -0.16
CDH12P55289 STMN1-201ENST00000357865 1137 ntAPPRIS P1 TSL 2 BASIC14.08□□□□□ -0.16
CDH12P55289 MRPL55-206ENST00000366732 722 ntTSL 3 BASIC14.08□□□□□ -0.16
CDH12P55289 PSMB8-203ENST00000395339 1025 ntTSL 3 BASIC14.08□□□□□ -0.16
CDH12P55289 CXCL12-206ENST00000395795 404 ntTSL 5 BASIC14.08□□□□□ -0.16
CDH12P55289 AC091729.2-201ENST00000415656 302 ntTSL 3 BASIC14.08□□□□□ -0.16
CDH12P55289 VCX3B-204ENST00000453306 868 ntAPPRIS ALT2 TSL 5 BASIC14.08□□□□□ -0.16
CDH12P55289 LINC02437-201ENST00000505053 911 ntTSL 3 BASIC14.08□□□□□ -0.16
CDH12P55289 FAU-205ENST00000527548 538 ntAPPRIS P1 TSL 5 BASIC14.08□□□□□ -0.16
CDH12P55289 RAB35-202ENST00000534951 939 ntTSL 2 BASIC14.08□□□□□ -0.16
CDH12P55289 CUEDC1-207ENST00000577840 875 ntTSL 5 BASIC14.08□□□□□ -0.16
CDH12P55289 SSH2-210ENST00000582084 560 ntTSL 3 BASIC14.08□□□□□ -0.16
CDH12P55289 AC020558.1-201ENST00000583662 425 ntTSL 3 BASIC14.08□□□□□ -0.16
CDH12P55289 AL022328.4-201ENST00000608025 1001 ntTSL 2 BASIC14.08□□□□□ -0.16
CDH12P55289 PSMB6-205ENST00000614486 871 ntTSL 2 BASIC14.08□□□□□ -0.16
CDH12P55289 CKMT1A-208ENST00000626814 1073 ntTSL 5 BASIC14.08□□□□□ -0.16
CDH12P55289 AC004461.2-201ENST00000629517 803 ntBASIC14.08□□□□□ -0.16
CDH12P55289 HIST1H3D-202ENST00000635200 948 ntAPPRIS P1 TSL 3 BASIC14.08□□□□□ -0.16
CDH12P55289 PDRG1-201ENST00000202017 1998 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
CDH12P55289 BLOC1S6-212ENST00000566753 1996 ntTSL 2 BASIC14.08□□□□□ -0.16
CDH12P55289 CHRD-206ENST00000450923 3384 ntAPPRIS ALT2 TSL 1 (best) BASIC14.08□□□□□ -0.16
CDH12P55289 CNN1-202ENST00000535659 1527 ntTSL 2 BASIC14.08□□□□□ -0.16
CDH12P55289 ZBTB17-202ENST00000375743 2745 ntAPPRIS P3 TSL 1 (best) BASIC14.08□□□□□ -0.16
CDH12P55289 AKR7L-202ENST00000429712 1313 ntAPPRIS P5 TSL 1 (best) BASIC14.08□□□□□ -0.16
CDH12P55289 XRCC3-211ENST00000555055 2584 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
CDH12P55289 RBPMS-202ENST00000320203 3110 ntAPPRIS P3 TSL 1 (best) BASIC14.08□□□□□ -0.16
Retrieved 100 of 98,524 protein–RNA pairs in 63.7 ms