Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 TPO-205ENST00000382201 2956 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
NKX3-1Q99801 NCKAP5L-201ENST00000335999 4900 ntAPPRIS P1 TSL 5 BASIC13.23□□□□□ -0.29
NKX3-1Q99801 LHCGR-202ENST00000401907 1477 ntTSL 5 BASIC13.23□□□□□ -0.29
NKX3-1Q99801 TRIM25-201ENST00000316881 5734 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
NKX3-1Q99801 SLC35C2-213ENST00000543605 5740 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
NKX3-1Q99801 ACTL9-201ENST00000324436 1426 ntAPPRIS P1 BASIC13.23□□□□□ -0.29
NKX3-1Q99801 OSGIN1-201ENST00000343939 2391 ntTSL 2 BASIC13.23□□□□□ -0.29
NKX3-1Q99801 ZKSCAN4-201ENST00000377294 2375 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
NKX3-1Q99801 TIA1-206ENST00000445587 1440 ntTSL 5 BASIC13.23□□□□□ -0.29
NKX3-1Q99801 CDH16-202ENST00000394055 2821 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
NKX3-1Q99801 APLP2-203ENST00000338167 3270 ntAPPRIS ALT2 TSL 1 (best) BASIC13.23□□□□□ -0.29
NKX3-1Q99801 FAM109A-201ENST00000361483 3256 ntAPPRIS ALT2 TSL 3 BASIC13.23□□□□□ -0.29
NKX3-1Q99801 KIF17-203ENST00000400463 3731 ntAPPRIS ALT2 TSL 1 (best) BASIC13.23□□□□□ -0.29
NKX3-1Q99801 LRRFIP1-203ENST00000308482 2775 ntAPPRIS ALT2 TSL 1 (best) BASIC13.23□□□□□ -0.29
NKX3-1Q99801 ASAP1-202ENST00000518721 5507 ntAPPRIS P3 TSL 5 BASIC13.23□□□□□ -0.29
NKX3-1Q99801 RNF183-203ENST00000441031 1366 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
NKX3-1Q99801 ZBTB17-202ENST00000375743 2745 ntAPPRIS P3 TSL 1 (best) BASIC13.23□□□□□ -0.29
NKX3-1Q99801 SLC6A20-202ENST00000358525 5423 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
NKX3-1Q99801 DAZL-201ENST00000250863 3104 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
NKX3-1Q99801 GPSM2-202ENST00000406462 7433 ntAPPRIS P1 TSL 5 BASIC13.23□□□□□ -0.29
NKX3-1Q99801 DDX17-202ENST00000396821 4791 ntAPPRIS ALT2 TSL 1 (best) BASIC13.23□□□□□ -0.29
NKX3-1Q99801 KDM5B-202ENST00000367264 6449 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
NKX3-1Q99801 NMU-201ENST00000264218 816 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
NKX3-1Q99801 POLR1C-201ENST00000304004 1280 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
NKX3-1Q99801 LY6G6C-201ENST00000375819 992 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
NKX3-1Q99801 ASMT-201ENST00000381229 1087 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
NKX3-1Q99801 HLA-DRB6-201ENST00000411500 1235 ntBASIC13.23□□□□□ -0.29
NKX3-1Q99801 PSMA8-203ENST00000415576 1280 ntAPPRIS ALT2 TSL 1 (best) BASIC13.23□□□□□ -0.29
NKX3-1Q99801 SNHG17-203ENST00000417578 880 ntTSL 2 BASIC13.23□□□□□ -0.29
NKX3-1Q99801 WDR53-203ENST00000429115 683 ntTSL 2 BASIC13.23□□□□□ -0.29
NKX3-1Q99801 PPP6R2P1-201ENST00000450880 1275 ntBASIC13.23□□□□□ -0.29
NKX3-1Q99801 IGFBP2-204ENST00000456764 846 ntTSL 3 BASIC13.23□□□□□ -0.29
NKX3-1Q99801 OST4-203ENST00000456793 561 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
NKX3-1Q99801 DUSP13-205ENST00000464872 684 ntTSL 3 BASIC13.23□□□□□ -0.29
NKX3-1Q99801 SWI5-205ENST00000495313 466 ntAPPRIS ALT2 TSL 3 BASIC13.23□□□□□ -0.29
NKX3-1Q99801 PXN-AS1-201ENST00000535200 1170 ntTSL 2 BASIC13.23□□□□□ -0.29
NKX3-1Q99801 NDUFA4L2-206ENST00000556732 883 ntTSL 3 BASIC13.23□□□□□ -0.29
NKX3-1Q99801 COMMD4-207ENST00000562789 746 ntTSL 2 BASIC13.23□□□□□ -0.29
NKX3-1Q99801 COX5A-203ENST00000564811 568 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
NKX3-1Q99801 PRR29-209ENST00000582540 967 ntTSL 2 BASIC13.23□□□□□ -0.29
NKX3-1Q99801 DM1-AS-201ENST00000586251 483 ntTSL 2 BASIC13.23□□□□□ -0.29
NKX3-1Q99801 ERCC1-212ENST00000591636 836 ntTSL 2 BASIC13.23□□□□□ -0.29
NKX3-1Q99801 AC005759.1-201ENST00000594805 855 ntTSL 3 BASIC13.23□□□□□ -0.29
NKX3-1Q99801 DUSP13-212ENST00000605915 1015 ntTSL 5 BASIC13.23□□□□□ -0.29
NKX3-1Q99801 Z92544.3-201ENST00000624747 417 ntBASIC13.23□□□□□ -0.29
NKX3-1Q99801 SERF2-217ENST00000630046 862 ntTSL 5 BASIC13.23□□□□□ -0.29
NKX3-1Q99801 TTLL4-212ENST00000457313 3723 ntTSL 2 BASIC13.23□□□□□ -0.29
NKX3-1Q99801 AC010327.3-201ENST00000591665 1643 ntTSL 2 BASIC13.23□□□□□ -0.29
NKX3-1Q99801 BLOC1S6-212ENST00000566753 1996 ntTSL 2 BASIC13.23□□□□□ -0.29
NKX3-1Q99801 FKBP1C-201ENST00000370659 1579 ntAPPRIS P1 BASIC13.23□□□□□ -0.29
NKX3-1Q99801 FES-202ENST00000394300 2302 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
NKX3-1Q99801 LINC00924-202ENST00000556053 2682 ntTSL 2 BASIC13.23□□□□□ -0.29
NKX3-1Q99801 PCDHGA3-203ENST00000619750 2695 ntAPPRIS ALT2 BASIC13.23□□□□□ -0.29
NKX3-1Q99801 FBLIM1-206ENST00000441801 1543 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
NKX3-1Q99801 AL121723.1-201ENST00000445194 1519 ntBASIC13.23□□□□□ -0.29
NKX3-1Q99801 DEK-202ENST00000397239 3427 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
NKX3-1Q99801 SLC4A7-213ENST00000454389 4159 ntAPPRIS ALT2 TSL 1 (best) BASIC13.23□□□□□ -0.29
NKX3-1Q99801 AQP6-204ENST00000615425 2245 ntAPPRIS P1 TSL 5 BASIC13.23□□□□□ -0.29
NKX3-1Q99801 ANKMY1-208ENST00000405002 3304 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
NKX3-1Q99801 HDHD3-202ENST00000374180 1497 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
NKX3-1Q99801 TFR2-201ENST00000223051 2888 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
NKX3-1Q99801 NARFL-202ENST00000540986 3212 ntTSL 2 BASIC13.22□□□□□ -0.29
NKX3-1Q99801 ARHGAP45-201ENST00000313093 4273 ntAPPRIS P3 TSL 1 (best) BASIC13.22□□□□□ -0.29
NKX3-1Q99801 PNPLA6-202ENST00000414982 4522 ntTSL 2 BASIC13.22□□□□□ -0.29
NKX3-1Q99801 LGALS8-203ENST00000341872 2437 ntAPPRIS ALT2 TSL 1 (best) BASIC13.22□□□□□ -0.29
NKX3-1Q99801 WRAP53-210ENST00000534050 1736 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
NKX3-1Q99801 TBCE-202ENST00000406207 2012 ntAPPRIS P3 TSL 5 BASIC13.22□□□□□ -0.29
NKX3-1Q99801 NUCB1-201ENST00000405315 2668 ntAPPRIS P2 TSL 1 (best) BASIC13.22□□□□□ -0.29
NKX3-1Q99801 RFTN1-203ENST00000432519 2695 ntAPPRIS ALT2 TSL 1 (best) BASIC13.22□□□□□ -0.29
NKX3-1Q99801 PEX5-207ENST00000455147 2689 ntAPPRIS P1 TSL 2 BASIC13.22□□□□□ -0.29
NKX3-1Q99801 EP400NL-206ENST00000446190 3697 ntTSL 2 BASIC13.22□□□□□ -0.29
NKX3-1Q99801 CMBL-201ENST00000296658 2335 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
NKX3-1Q99801 THBS2-206ENST00000617924 5280 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
NKX3-1Q99801 RNF145-202ENST00000424310 3613 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
NKX3-1Q99801 ZNF785-201ENST00000395216 3282 ntAPPRIS P2 TSL 1 (best) BASIC13.22□□□□□ -0.29
NKX3-1Q99801 NME7-201ENST00000367811 1642 ntAPPRIS P3 TSL 1 (best) BASIC13.22□□□□□ -0.29
NKX3-1Q99801 BRAP-201ENST00000327551 1947 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
NKX3-1Q99801 HSPA7-201ENST00000445535 1927 ntBASIC13.22□□□□□ -0.29
NKX3-1Q99801 IL20RA-203ENST00000367748 3522 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
NKX3-1Q99801 RPL18A-201ENST00000222247 665 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
NKX3-1Q99801 NUDT4P1-201ENST00000322209 1206 ntAPPRIS P1 BASIC13.22□□□□□ -0.29
NKX3-1Q99801 C11orf88-202ENST00000375618 712 ntAPPRIS ALT2 TSL 1 (best) BASIC13.22□□□□□ -0.29
NKX3-1Q99801 UBE2F-202ENST00000409332 1138 ntTSL 5 BASIC13.22□□□□□ -0.29
NKX3-1Q99801 SYS1-203ENST00000414310 795 ntTSL 3 BASIC13.22□□□□□ -0.29
NKX3-1Q99801 HLA-J-203ENST00000494367 1087 ntBASIC13.22□□□□□ -0.29
NKX3-1Q99801 AL161781.2-201ENST00000509911 739 ntTSL 2 BASIC13.22□□□□□ -0.29
NKX3-1Q99801 TPT1-AS1-219ENST00000523506 574 ntTSL 4 BASIC13.22□□□□□ -0.29
NKX3-1Q99801 RHBDL2-203ENST00000540558 697 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
NKX3-1Q99801 VPS29-207ENST00000549970 818 ntTSL 3 BASIC13.22□□□□□ -0.29
NKX3-1Q99801 MRPL34-202ENST00000594999 555 ntAPPRIS P2 TSL 2 BASIC13.22□□□□□ -0.29
NKX3-1Q99801 WNT1-202ENST00000613114 1278 ntTSL 5 BASIC13.22□□□□□ -0.29
NKX3-1Q99801 AL033527.5-202ENST00000641632 1098 ntBASIC13.22□□□□□ -0.29
NKX3-1Q99801 ACER2-201ENST00000340967 2238 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
NKX3-1Q99801 AC004754.1-201ENST00000600536 2242 ntAPPRIS P1 TSL 5 BASIC13.22□□□□□ -0.29
NKX3-1Q99801 SLIT1-201ENST00000266058 7925 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
NKX3-1Q99801 HDAC9-208ENST00000417496 2524 ntTSL 2 BASIC13.22□□□□□ -0.29
NKX3-1Q99801 CNKSR2-203ENST00000425654 5668 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
NKX3-1Q99801 CTSD-211ENST00000637387 1597 ntAPPRIS ALT2 TSL 5 BASIC13.22□□□□□ -0.29
NKX3-1Q99801 CYB561D1-201ENST00000310611 5009 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
NKX3-1Q99801 SRSF5-203ENST00000553521 2815 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Retrieved 100 of 98,524 protein–RNA pairs in 78.5 ms